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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11155#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 973 fasta sequence
[CCCGCAAGTCTCCCTCTCGCACCACAACAAACGCGCCTCCTCCATCTCGAACTCTCCAGTCTCCACCACCCCCGTCCCCGTCTCTCGATCGCCATGGCCTCCGCCCTCGCCGCCTCCACCGCCGTCTGCTCCTCTCCCCTCGCATCCGCCTCCGCCTCCGCTTCGTCCGCGCGCCGCCTGCGCGCGGTCCCGCCCTCCCGCGGCATCCGCTACCAGGCCCTCCGCGCGGACTCCGGTTTCGCCGGGAACCGCCGGGGTGGCGGCCGTGGAGCGTCGGTAGTGTGCGCGGTCCAGGGCCAGGACACATCCATCCAAGTTCCAGAAGTGACGAAGTCAACATGGCAATCACTTGTTATGGAGAGCGAGCTTCCTGTCCTTGTTGGATACTGGGCTACATGGTGTGGGCCTTGCAAAATGATTGATCCCGTTGTTGGCAAGCTCTCCAAGGAGTATGAAGGGAAACTGAAATGCTACAAGCTCAATACTGACGAGAATCCAGATATAGCAAGTCAGTATGGCGTCCGGAGCATCCCAACCATGATGATA-TTCAAGAACGGAGAGA-AGAAAGATGCAGTGATTGGAGCTGTG-CCTGAGAGTACACTGATCGCATCCATTGAGAAATTTGT-CGAGAGGTAAAATGCAAATG-CCAAAACTGAACCCTTTGAACAGTTAG-CATTACACGTCCAACTTTCAGAACTTCAGATCA-TTCAAGAGTCGAAGCCATGCTCAATGTTTATATGCCTACGTGTATAGATAGTATTGGGAATCGCTTTCGGTAGCATCCAATAAATGTAATTCGAGGATGCAGGTTGAATGATGAAATCATGAAAGTCGCAAGGAAGCCTGGTTTCATGTGTCCATTCTTTTGGCTGTAGATATGTATGGTATTGACTGTTAAGATACATATTACCCTTTTACACTATATTATTGCTTATGATATGTTCCTTCCAAATAGGTGCTTGAGGTAAAAAAA]
[+] EMBL AK069195 [CCCGCAAGTCTCCCTCTCGCACCACAACAAACGCGCCTCCTCCATCTCGAACTCTCCAGTCTCCACCACCCCCGTCCCCGTCTCTCGATCGCCATGGCCTCCGCCCTCGCCGCCTCCACCGCCGTCTGCTCCTCTCCCCTCGCATCCGCCTCCGCCTCCGCTTCGTCCGCGCGCCGCCTGCGCGCGGTCCCGCCCTCCCGCGGCATCCGCTACCAGGCCCTCCGCGCGGACTCCGGTTTCGCCGGGAACCGCCGGGGTGGCGGCCGTGGAGCGTCGGTAGTGTGCGCGGTCCAGGGCCAGGACACATCCATCCAAGTTCCAGAAGTGACGAAGTCAACATGGCAATCACTTGTTATGGAGAGCGAGCTTCCTGTCCTTGTTGGATACTGGGCTACATGGTGTGGGCCTTGCAAAATGATTGATCCCGTTGTTGGCAAGCTCTCCAAGGAGTATGAAGGGAAACTGAAATGCTACAAGCTCAATACTGACGAGAATCCAGATATAGCAAGTCAGTATGGCGTCCGGAGCATCCCAACCATGATGATA TTCAAGAACGGAGAGA AGAAAGATGCAGTGATTGGAGCTGTG CCTGAGAGTACACTGATCGCATCCATTGAGAAATTTGT CGAGAGGTAAAATGCAAATG CCAAAACTGAACCCTTTGAACAGTTAG CATTACACGTCCAACTTTCAGAACTTCAGATCA TTCAAGAGTCGAAGCCATGCTCAATGTTTATATGCCTACGTGTATAGATAGTATTGGGAATCGCTTTCGGTAGCATCCAATAAATGTAATTCGAGGATGCAGGTTGAATGATGAAATCATGAAAGTCGCAAGGAAGCCTGGTTTCATGTGTCCATTCTTTTGGCTGTAGATATGTATGGTATTGACTGTTAAGATACATATTACCCTTTTACACTATATTATTGCTTATGATA ]
[+] EMBL AU063478 [ ACTCTCCAGTCTCCACCACCCCCGTCCCCGTCTCTNGATCGCCATGGCCTCCGCCCTCGCCGCCTCCACCGCCGTCTGCTCCTCTCCCCTCGCATCCGCCTCCGNCTCCGCTTCGTCCGCGCGCCGCCTGCGCG GTNCCCGCCCTCCCGCGGCATCCGCTACCAGGCCCTCCGCGCGGACTCCGGTTTCGCCGGGAACCGCCGGGGTGGCGGCCGTGGAGCGTCGGTAGTNTNCGCGGTCCAGGGCCAAGACANATCCATCCAAGTTTCAGAAGTTACGA NAACATGGCAAT AATTTNTATGGAGAGCGAG TTTCTGTCC ]
[+] EMBL AU197521 [ TATGGAGAGCGAGCTTCCTGTCCTTGTTGGATACTGGGCTACATGGTGTGGGCCTTGCAAAATGATTGATCCCGTTGTTGGCAAGCTCTCCAAGGAGTATGAAGGGAAACTGAAATGCTACAAGCTCAATACTGACGAGAATCCAGATATAGCAAGTCAGTATGGCGTCCGGAGCATCCCAACCATGATGATA TTCAAGAACGGAGAGA AGAAAGATGCAGTGATTGGAGCTGTG CTGAGAGTACACTGATCGCATCCATTGAGAAATTTGT CGAGAGGTAAAATGCAAATG CCAAAACTGAACCCTTTGAACAGTTAG CATTACACGTCCAACTTTCAGAACTTCAGATCA TTCAAGAGTCGAAGCCATGCTCAATGTTTATATGCCTACGTGTATAGATAGTATTTGGGATCGCTTTCGGTGGCATCCCATNAATG ]
[+] EMBL AU100989 [ ATGATGATATTTCAAGAACGGAGAGATNGAAAGATGCAGTGATTGGAGCTNTGCCCTGAGAGTACACTGATCGCATCCATTGAGAAATTTNTCCGAGAGGTAAAATGCAAATGCCCAAAACTGAACCCTTTGAACAGTTAGNCATTACACGTCCAACTTTCAGAACTTCAGATCATTTCAAGAGTCGAAGCCATGCTCAATGTTTATATGCCTACGTGTATAGATAGTATTGGGAATCGCTTTCGGTAGCATCCAATAAATGTAATTCGAGGATGCAGGTTGAATGATGAAATCATGAAAGTCGCAAGGAAGCCTGGTTTCATGTGTCCATTCTTTTGGCTNTAGATATGTATGGTATTGACTGTTAAGATACATATTACCCTTTTACACTATATTATTGCTTATGATATGTTCCTTCCAAATAGGTGCTTGAGGTAAAAAAA]
consensusID : consensus_11155#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 863 fasta sequence
[GTCGCCTCCTCCCGCAGTGCCGGGGCGTCCGCGCTGCCCCGGTCGTCCGGCTCCGCTCGGGACGCGCCCGCGGCGTGTCGGTGGTGTGCGCCGCCCAGGGCCAGGAGACCTCCTTCCAAGTTCCTGACGTGACTAAGTCAACATGGCAGTCACTTGTGGTGGAGAGTGAACTTCCGGTTCTCGTTGAGTTCTGGGCTTCGTGGTGCGGGCCATGCAAAATGATAGATCCTGTCATTGGCAAACTTTCAAAAGAATATGAAGGGAAGCTGAACTGCTACAAGCTCAACACTGATGAAAACCCCGACATAGCAACCCAGTTTGGGATAAGAAGCATTCCCACAATGATGATATTCAAGAACGGTGATAAGAAAGATGCGGTGATTGGAGCTGTGCCCGAGAGCACCCTGGTCAGCAATATCAACAAATACATCGGGAGGTAAAATGTCAGGATGTATATTAGCTAGGCAGTTGGGCTTGAACCTTGACGCCCAGATGGATGTATAGGCAAGTATGAACTGCATTGGTTTTAGGACAATGGGCAGGTAAATGTGTGGATGGTGGAACCCCGGGAAGTGGTGAGGGATGTGATCATAGAAATGGCGGTTGCCAGTTGGATTATACAGATGTAAGTTATACCCGAATTTGATCTTATGGTGCAGTGCGGCGCGGCCTTTTTAGTTTTTGTTTCTCTTCTACTCTCGATATTAATGTGGACCACAGTGTTTCCTAGTGCCACTNTTGTCCTAATAGTGATGAAGTTATATTTACATGTTGGATGTTTGAACATATTAAAGAAGATAAGATTGAATTTTATTTATATGTCATATAGTATATATTATTAGAGATTGATGATACTAATAAGA]
[+] EMBL CA756941 [GTCGCCTCCTCCCGCAGTGCCGGGGCGTCCGCGCTGCCCCGGTCGTCCGGCTCCGCTCGGGACGCGCCCGCGGCGTGTCGGTGGTGTGCGCCGCCCAGGGCCAGGAGACCTCCTTCCAAGTTCCTGACGTGACTAAGTCAACATGGCAGTCACTTGTGGTGGAGAGTGAACTTCCGGTTCTCGTTGAGTTCTGGGCTTCGTGGTGCGGGCCATGCAAAATGATAGATCCTGTCATTGGCAAACTTTCAAAAGAATATGAAGGGAAGCTGAACTGCTACAAGCTCAACACTGATGAAAACCCCGACATAGCAACCCAGTTTGGGATAAGAAGCATTCCCACAATGATGATATTCAAGAACGGTGATAAGAAAGATGCGGTGATTGGAGCTGTGCCCGAGAGCACCCTGGTCAGCAATATCAACAAATACATCGGGAGGTAAAATGTCAGGATGTATATTAGCTAGGCAGTTGGGCTTGAACCTTGACGCCCAGATGGATGTATAGGCAAGTATGAACTGCATTGGTTTTAGGACAATGGGCAGGTAAATGTGTGGATGGTGGAACCCCGGGAAGTGGTGAGGGATGTGATCATAGAAATGGCGGTTGCCAGTTGGATTATACAGATGTAAGTTATACCCGAATTTGATCTTATGGTGCAGTGCGGCGCGGCCTTTTTAGTTTTTGTTTCTCTTCTACTCTCGATATTAATGTGGACCACAGTGTTTCCTAGTGCCACTNTTGTCCTAATAGTGATGAAGTTATATTTACATGTTGGATGTTTGAACATATTAAAGAAGATAAGATTGAATTTTATTTATATGTCATATAGTATATATTATTAGAGATTGATGATACTAATAAGA]
consensusID : consensus_11155#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 826 fasta sequence
[CGTCGCCTTCCTCACCGAACCCGCAACCGCCACCGCCACCGCCACCGCCCGTCCACATCCGCCGGCGCCGATGGCCTCCTCCGCCCTCGCCGTCTCCGTCGCCAAGCCAGCCGCGTCTCCTCCCGTCGCCGTCGCCGCGGTAACCCCGCAGCGTCGCCTCCTCCCGCAGTGCCGGGGCGTCCGCGCTGCCCCGGTCGTCCGGCTCCGCTCGGGACGCGCCCGCGGCGTGTCGGTGGTGTGCGCCGCCCAGGGCCAGGAGACCTCCTTCCAAGTTCCTGACGTGACTAAGTCAACATGGCAGTCACTTGTGGTGGAGAGTGAACTTCCGGTTCTCGTTGAGTTCTGGGCTTCGTGGTGCGGGCCATGCAAAATGATAGATCCTGTCATTGGCAAACTTTCAAAAGAATATGAAGGGAAGCTGAACTGCTACAAGCTCAACACTGATGAAAACCCCGACATAGCAACCCAGTTTGGGATAAGAAGCATTCCCACAATGATGATATTCAAGAACGGTGAGAAGAAAGATGCGGTGATTGGAGCTGTGCCCGAGAGCACCCTGGTCAGCAGCATCGACAAATACATCGGGAGGTAAAATGTCAGGTTGAATATTTTCTAGGCAGTTGGGCTTCAACCTTCACGCCCAGATGGATATATTGTCATCTATGAACTCCATTTCTTTTCGAGAATAGGCAGGAGAATCGTAAATTATGGAACCCCGGTTTGGTAGTTGTATGTACATAATAATGTGATAACCGCTAATAAATGCAATTCAAGGCTGAGCCCTGCGTGGCCTTCTGGATCAAAAAAAAAAAAGGTTGCTTCGAGT]
[+] EMBL AK099517 [CGTCGCCTTCCTCACCGAACCCGCAACCGCCACCGCCACCGCCACCGCCCGTCCACATCCGCCGGCGCCGATGGCCTCCTCCGCCCTCGCCGTCTCCGTCGCCAAGCCAGCCGCGTCTCCTCCCGTCGCCGTCGCCGCGGTAACCCCGCAGCGTCGCCTCCTCCCGCAGTGCCGGGGCGTCCGCGCTGCCCCGGTCGTCCGGCTCCGCTCGGGACGCGCCCGCGGCGTGTCGGTGGTGTGCGCCGCCCAGGGCCAGGAGACCTCCTTCCAAGTTCCTGACGTGACTAAGTCAACATGGCAGTCACTTGTGGTGGAGAGTGAACTTCCGGTTCTCGTTGAGTTCTGGGCTTCGTGGTGCGGGCCATGCAAAATGATAGATCCTGTCATTGGCAAACTTTCAAAAGAATATGAAGGGAAGCTGAACTGCTACAAGCTCAACACTGATGAAAACCCCGACATAGCAACCCAGTTTGGGATAAGAAGCATTCCCACAATGATGATATTCAAGAACGGTGAGAAGAAAGATGCGGTGATTGGAGCTGTGCCCGAGAGCACCCTGGTCAGCAGCATCGACAAATACATCGGGAGGTAAAATGTCAGGTTGAATATTTTCTAGGCAGTTGGGCTTCAACCTTCACGCCCAGATGGATATATTGTCATCTATGAACTCCATTTCTTTTCGAGAATAGGCAGGAGAATCGTAAATTATGGAACCCCGGTTTGGTAGTTGTATGTACATAATAATGTGATAACCGCTAATAAATGCAATTCAAGGCTGAGCCCTGCGTGGCCTTCTGGATCGAAGGTATGGAAGGTTGCTTCGAGT]
[+] EMBL CF329078 [ cAATACATCGGGAGGTAAAATGTCAGGTTGAATATTTTCTAGGCAGTTGGGCTTCAACCTTCACGCCCAGATGGATATATTGTCATCTATGAACTCCATTTCTTTTCGAGAATAGGCAGGAGAATCGTAAATTATGGAACCCCGGTTTGGTAGTTGTATGTACATAATAATGTGATAACCGCTAATAAATGCAATTCAAGGCTGAGCCCTGCGTGGCCTTCTGGATCAAAAAAAAAA ]
[-] EMBL CF329077 [ AATACATCGGGAGGTAAAATGTCAGGTTGAATATTTTCTAGGCAGTTGGGCTTCAACCTTCACGCCCAGATGGATATATTGTCATCTATGAACTCCATTTCTTTTCGAGAATAGGCAGGAGAATCGTAAATTATGGAACCCCGGTTTGGTAGTTGTATGTACATAATAATGTGATAACCGCTAATAAATGCAATTCAAGGCTGAGCCCTGCGTGGCCTTCTGGATCAAAAAAAAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11155#1 ------------------------------------------------------------
consensus_11155#2 ---------------------------------CGTCGCCTTCCTCACCGAACCCGCAAC 27
consensus_11155#0 CCCGCAAGTCTCCCTCTCGCACCACAACAAACGCGCCTCCTCCATCTCGAACTCTCCAGT 60
consensus_11155#1 ------------------------------------------------------------
consensus_11155#2 CGCCACCGCCACCGCCACCGCCCGTCCACATCCGCCGGCGCCGA--TGGCCTCCTCCGCC 85
consensus_11155#0 CTCCACCACCCCCGTCCCCGTCTCTCGATCGCCATGGCCTCCGCCCTCGCCGCCTCCACC 120
consensus_11155#1 ------------------------------------------------------------
consensus_11155#2 CTCGCCGTCTCCGTCGCCAAGCCAGCCGCGTCTCCTCCCGTCGCCGTCGCCGCGGTAACC 145
consensus_11155#0 GCCGTCTGCTCCTCTCCCCTCGCATCCGCCTCCGCCTCCG-CTTCGTCCGCGCGCCGCCT 179
consensus_11155#1 -------GTCGCCTCCTCCCGCAG-------TGCCGGGGCGTCCGCGCTG-CCCCGGT-- 43
consensus_11155#2 CCGCAGCGTCGCCTCCTCCCGCAG-------TGCCGGGGCGTCCGCGCTG-CCCCGGT-- 195
consensus_11155#0 GCGCGCGGTCCCGCCCTCCCGCGGCATCCGCTACCAGGCCCTCCGCGCGGACTCCGGTTT 239
*** * ******** * * ** ** * ******* * * *****
consensus_11155#1 CGTCCGGCTCCGCTCGGGACGCGCCCGCGGCGTGTCGGTGGTGTGCGCCGCCCAGGGCCA 103
consensus_11155#2 CGTCCGGCTCCGCTCGGGACGCGCCCGCGGCGTGTCGGTGGTGTGCGCCGCCCAGGGCCA 255
consensus_11155#0 CGCCGGGAACCGCCGGGGTGGCGGCCGTGGAGCGTCGGTAGTGTGCGCGGTCCAGGGCCA 299
** * ** **** *** *** *** ** * ****** ******** * *********
consensus_11155#1 GGAGACCTCCTTCCAAGTTCCTGACGTGACTAAGTCAACATGGCAGTCACTTGTGGTGGA 163
consensus_11155#2 GGAGACCTCCTTCCAAGTTCCTGACGTGACTAAGTCAACATGGCAGTCACTTGTGGTGGA 315
consensus_11155#0 GGACACATCCATCCAAGTTCCAGAAGTGACGAAGTCAACATGGCAATCACTTGTTATGGA 359
*** ** *** ********** ** ***** ************** ******** ****
consensus_11155#1 GAGTGAACTTCCGGTTCTCGTTGAGTTCTGGGCTTCGTGGTGCGGGCCATGCAAAATGAT 223
consensus_11155#2 GAGTGAACTTCCGGTTCTCGTTGAGTTCTGGGCTTCGTGGTGCGGGCCATGCAAAATGAT 375
consensus_11155#0 GAGCGAGCTTCCTGTCCTTGTTGGATACTGGGCTACATGGTGTGGGCCTTGCAAAATGAT 419
*** ** ***** ** ** **** * ******* * ***** ***** ***********
consensus_11155#1 AGATCCTGTCATTGGCAAACTTTCAAAAGAATATGAAGGGAAGCTGAACTGCTACAAGCT 283
consensus_11155#2 AGATCCTGTCATTGGCAAACTTTCAAAAGAATATGAAGGGAAGCTGAACTGCTACAAGCT 435
consensus_11155#0 TGATCCCGTTGTTGGCAAGCTCTCCAAGGAGTATGAAGGGAAACTGAAATGCTACAAGCT 479
***** ** ******* ** ** ** ** *********** ***** ***********
consensus_11155#1 CAACACTGATGAAAACCCCGACATAGCAACCCAGTTTGGGATAAGAAGCATTCCCACAAT 343
consensus_11155#2 CAACACTGATGAAAACCCCGACATAGCAACCCAGTTTGGGATAAGAAGCATTCCCACAAT 495
consensus_11155#0 CAATACTGACGAGAATCCAGATATAGCAAGTCAGTATGGCGTCCGGAGCATCCCAACCAT 539
*** ***** ** ** ** ** ******* **** *** * * ***** ** ** **
consensus_11155#1 GATGATATTCAAGAACGGTGATAAGAAAGATGCGGTGATTGGAGCTGTGCCCGAGAGCAC 403
consensus_11155#2 GATGATATTCAAGAACGGTGAGAAGAAAGATGCGGTGATTGGAGCTGTGCCCGAGAGCAC 555
consensus_11155#0 GATGATATTCAAGAACGGAGAGAAGAAAGATGCAGTGATTGGAGCTGTGCCTGAGAGTAC 599
****************** ** *********** ***************** ***** **
consensus_11155#1 CCTGGTCAGCAATATCAACAAATACATCGGGAGGTAAAATGTCAGGATGTATATTA---- 459
consensus_11155#2 CCTGGTCAGCAGCATCGACAAATACATCGGGAGGTAAAATGTCAGGTTGAATATTT---- 611
consensus_11155#0 ACTGATCGCATCCATTGAGAAATTTGTCGAGAGGTAAAATGCAAATGCCAAAACTGAACC 659
*** ** ** * **** *** *********** * * * *
consensus_11155#1 -GCTAGGCAGTTGGGCTTGAACCTTGA-CGCCCAGATGGATGTATAGGCAAGTATGAACT 517
consensus_11155#2 -TCTAGGCAGTTGGGCTTCAACCTTCA-CGCCCAGATGGATATATTGTCATCTATGAACT 669
consensus_11155#0 CTTTGAACAGTTAGCATTACACGTCCAACTTTCAGA---ACTTCAGATCATTCAAGAGTC 716
* ***** * ** ** * * * **** * * ** * **
consensus_11155#1 GCATTGGTTTTAGGACAATGGGCAGGTAAATGTGTGGATGGTG--GAACCCCGGGAAGTG 575
consensus_11155#2 CCATTTCTTTTCGAG-AATAGGCAGGAGAAT-CGTAAATTATG--GAACCCCGGTT--TG 723
consensus_11155#0 GAAGCCATGCTCAATGTTTATATGCCTACGTGTATAGATAGTATTGGGAATCGCTTT-CG 775
* * * * * * ** * * ** *
consensus_11155#1 GTGAGGGATGTGATCATAGAAATGGCGGTTGCCAGTTGGATTATACAG--ATGTAAGTTA 633
consensus_11155#2 GT-AGTTGTATGTACATAATAATG-TGATAACC-GCTAATAAATGCAA--TTCAAGGCTG 778
consensus_11155#0 GT-AGCATCCAATAAATGTAATTCGAGGATGCAGGTTGAATGATGAAATCATGAAAGTCG 834
** ** ** * * * * * * ** * * * *
consensus_11155#1 TACCCGAATTTGATCTTATG-GTGCAGTGCGGCGCGGCCTTTTTAGTTTTTGTTTCTCTT 692
consensus_11155#2 AGCCCTGCGTGGCCTTCTGG-ATCAAAAAAAAAAAAGGTTGCTTCGAGT----------- 826
consensus_11155#0 CAAGGAAGCCTGGTTTCATGTGTCCATTCTTTTGGCTGTAGATATGTATGGTATTGACTG 894
* * * * * * * *
consensus_11155#1 CTACTCTCGATATTAA---TGTGGACCACAGTGTTTCCTAGTGCCACTNTTGTCCTAATA 749
consensus_11155#2 ------------------------------------------------------------
consensus_11155#0 TTAAGATACATATTACCCTTTTACACTATATTATTGCTTATGATATGTTCCTTCCAAATA 954
consensus_11155#1 G-TGATGAAGTTATATTTACATGTTGGATGTTTGAACATATTAAAGAAGATAAGATTGAA 808
consensus_11155#2 ------------------------------------------------------------
consensus_11155#0 GGTGCTTGAGGTAAAAAAA----------------------------------------- 973
consensus_11155#1 TTTTATTTATATGTCATATAGTATATATTATTAGAGATTGATGATACTAATAAGA 863
consensus_11155#2 -------------------------------------------------------
consensus_11155#0 -------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||