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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11171#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 681 fasta sequence
[GTCGTCTCCTCCTCCGTTCGCCGTCTCCTCCCCC-AACTCGCGC-CCGGCGG-GAGCAA-GCGAAGCGAAGTCCCCGTGTAGCTCCCGGTTTGGATCGACCCCGGCGGCGGCGGCAGGGATGGCGCTGAGGGGCGTTTGGCAGCTGCAGAAGCTCGTGGTGAACTACTGCGATTGGGGAGGGAGCAGCAGGGGGATCAGGGCTTTTATGGAGGCGCATCTTCCAGCTTTTAAGGAAAAGAACCCCCACTTAGAGGTGGTGACAGAGTTAGTCCGTGGACAGCATCCTAACCTGAAGGGCATTTACAAAAATCATAATGAGCGAGTTGTTTGTGTCCGAAATTTAGCGCCCGAGGACATACTATTGCAAGCTACCAGGCTAAGGAATTCTCTGGGCAGGAAAGTGGTGAAGCTGAGAACCAGACACGTAACAAAGCGCCCCAGTGTTCAGGGAACATGGACGACAGAACTGAAGATGTGATCATGTGAGTTGACCAGTTGGGTTCTCAGACAAGCTGCTGATGTTCTTTGATGTCGTGATTGCAGAACTGTTTTCATATGCGTGTCAAGAATTAGTCAGTGCAGCTATTCGACTCACCTTTTTTTAGT-G-ATTACAGTTCAACTTTGTCTTTTTGTTTCGTCCGGTATCTGATAATAACATGCAAACTTGGGTGTTAAAAAAAAAAA]
[+] EMBL OSC18432 [GTCGTCTCCTCCTCCGTTCGCCGTCTCCTCCCCC AACTCGCGCGCCGGCGG GAGCAAGGCNAAG GATGTCCCCGTGTAGCTCCCGGTTTGGATCGACCCCGGCGGCGGCGGCAGGGATGGCGCTGAGGGGCGTTTGGCAGCTGCAGAAGCTCGTGGTGAACTACTGCGATTGGGGAGGGAGCAGCAGGGGGATCAGGGCTTTTATGGAGGCGCATCTTCCAGCTTTTAAGGAAAAGAACCCCCACTTAGAGGTGGTGACAGAGTTAGTCCGTNGACAGCATCCTAACCTGAAGGGCATTTACAAAAATCATAATGA ]
[+] EMBL C26916 [ CCGTCTCCTCCCCC AACTCGCGCGCCGGCGG GAGCAA GCAAAGANAGGTCCCCGTGTAGCTCCCGGTTTGGTTCNACCCCGGCGGCGGCGGCAGGGATGGCGCTGAGGGGCGTTTGGCAGCTGCAGAAGCTCGTGGTGAACTACTGCNATTGGGGAGGGATTAGCAGGGGGATCAGGGCTTTTATGGAGGCGCATCTTCCAGCTTTTAAGGAAAAGAACCCCCACTTAGAGGTGGTGACAGAGTTAGTCCGTGGACAGCATCCTAACCTGAAGGGCA ]
[+] EMBL C96988 [ TCTTCCCCCAAANTCGCGC CCGGCGGCGAGCAA GCGAAGCGGAGTCCCCGTGTAGCTCCCGGTTTGGATCGACCCCGGCGGCGGCGGCAGGGATGGCGCTGAGGGGCGTTTGGCAGCTGCAGAAGCTCGTGGTGAACTACTGCGATTGGGGAGGGAGCAGCAGGGGGATCAGGGCTTTTATGGAGGCGCATCTTCCAGCTTTTAAGGAAAAGAACCCCCACTTAGAGGTGGTGACAGAGTTAGTCCGTGGACAGCATCCTAACCTGAAGGGCATTTACAAAAATCATAATGAGCGAGTTGTTTGTGTCCGAAATTTAGCGCCCGAGGACATACTATTGCAAGCTACCAGGCTAAGGAATTCTCTGGGCAGGAAAGTGGTGAAGCTGAGAACCAGACACGTAACAAAGCGCCCCAGTGTTCAGGGAACATGGACGACAGAACTGAAGATGTGATCATGTGAGTTGACCAGTTGGGTTCTCAGACAAGCTGCTGATGTTCTTTGATGTCGTGATTGCAGAACTGTTTTCATATGCGTGTCAAGAATTAGTCAGTGCAGCTATTCGACTCACCTTTTTTTAGT G ATTACAGTTCAACTTTGTCTTTTTGTTTCGTCCGGTATCTGATAATAACATGCAAACTTGGGTGTTAAAAAAAAAAA]
[+] EMBL CA758827 [ GCGGCGAGCAA GCGAAGCGGAGTCCCCGTGTAGCTCCCGGTTTGGATCGACCCCGGCGGCGGCGGCAGGGATGGCGCTGAGGGGCGTTTGGCAGCTGCAGAAGCTCGTGGTGAACTACTGCGATTGGGGAGGGAGCAGCAGGGGGATCAGGGCTTTTATGGAGGCGCATCTTCCAGCTTTTAAGGAAAAGAACCCCCACTTAGAGGTGGTGACAGAGTTAGTCCGTGGACAGCATCCTAACCTGAAGGGCATTTACAAAAATCATAATGAGCGAGTTGTTTGTGTCCGAAATTTAGCGCCCGAGGACATACTATTGCAAGCTACCAGGCTAAGGAATTCTCTGGGCAGGAAAGTGGTGAAGCTGAGAACCAGACACGTAACANAGCGCCCCAGTGTTCAGGGAACATGGACGACAGAACTGAAGATGTGATCATGTGAGTTGACCAGTTGGGTTCTCAGACNAGCTGCTGATGTTCTTTGATGTCGTGATTGCAGAACTGTTTTCATATGCGTGTCAAGAATTAGTCAGTGCAGCTATTCGACTCACCTTTTTTTAGT GNATTACAGTTC ACTTTGTCTTTTTGTTTCGTCCGGTATCTGATAAT ACATGCANACT ]
[+] EMBL C99503 [ CCCCCACTTAGAGGTGGTGACAGAGTTANTCCGTGGACAGCATCCTAACCTGAAGGGCATTTACAAAAATCATAATGAGCGAGTTGTTTGTGTCCGAAATTTAGCGCCCGAGGACATACTATTGCAAGCTACCAGGCTAAGGAATTCTCTGGGCAGGAAAGTGGTGAAGCTGAGAACCAGACACGTAACAAAGCGCCCCAGTGTTCAGGGAACATGGACGACAGAACTGAAGATGTGATCATGTGAGTTGACCAGTTGGGTTCTCAGACAAGCTGCTGATGTTCTTTGATGTCGTGATTGCAGAACTGTTTTCATATGCGTGTCAAGAATTAGTCAGTGCAGCTATTCGACTCACCTTTTTTTAGTGG ATTACAGTTCAACTTTGTCTTTTTGTTTCGTCCGGTATCTGATAATAACATGCAAACTTGGGTGTTcctt ]
consensusID : consensus_11171#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 539 fasta sequence
[CAGGAATTCGGCACGAGGCGCGCCGGCGGCGAGCAAGGTAAGGACTGATCGATTGGCTTGGGCCGCTTGCATCCTCGTCTTCCTCATCCGGGGTCTCCGAATTTCCGCGTGCAGCGAAGCGGAGTCCCCGTGTAGCTCCCGGTTTGGATCGACCCCGGCGGCGGCGGCAGGGATGGCGCTGAGGGGCGTTTGGCAGCTGCAGAAGCTCGTGGTGAACTACTGCGATTGGGGAGGGAGCAGCAGGGGGATCAGGGCTTTTATGGAGGCGCATCTTCCAGCTTTTAAGGAAAAGAACCCCCACTTAGAGGTGGTGACAGAGTTAGTCCGTGGACAGCATCCTAACCTGAAGGGCATTTACAAAAATCATAATGAGCGAGTTGTTTGTGTCCGAAATTTAACGCCCCAGGACATACTATTGCAAGCTACCACGCTAAGGGATTCTCTGGGCAAGAAAGTGGTGAAGCTTGAAACCACACACGTTACAAAGCGCCCCCATTGGTTTAGGAACATTGACCACAAAACTGGAGATGTGATCATGT]
[+] EMBL BE039192 [CAGGAATTCGGCACGAGGCGCGCCGGCGGCGAGCAAGGTAAGGACTGATCGATTGGCTTGGGCCGCTTGCATCCTCGTCTTCCTCATCCGGGGTCTCCGAATTTCCGCGTGCAGCGAAGCGGAGTCCCCGTGTAGCTCCCGGTTTGGATCGACCCCGGCGGCGGCGGCAGGGATGGCGCTGAGGGGCGTTTGGCAGCTGCAGAAGCTCGTGGTGAACTACTGCGATTGGGGAGGGAGCAGCAGGGGGATCAGGGCTTTTATGGAGGCGCATCTTCCAGCTTTTAAGGAAAAGAACCCCCACTTAGAGGTGGTGACAGAGTTAGTCCGTGGACAGCATCCTAACCTGAAGGGCATTTACAAAAATCATAATGAGCGAGTTGTTTGTGTCCGAAATTTAACGCCCCAGGACATACTATTGCAAGCTACCACGCTAAGGGATTCTCTGGGCAAGAAAGTGGTGAAGCTTGAAACCACACACGTTACAAAGCGCCCCCATTGGTTTAGGAACATTGACCACAAAACTGGAGATGTGATCATGT]
consensusID : consensus_11171#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 489 fasta sequence
[CACATCTTCCAGCTTGTTAAGGAAAAGGACCCCCGACTTAGAGGTGGTGACAGAGTTAGTCCGTGGACACGCATCCTAACCTGAAGGGCATTTTACCATAGAATCATAATGAGCGAGATTGCTTTGTGTCCTGAAAATTTAGCGCCCGAGGACATACTATTGCAAGCTACCAGGCTAAGGAATTCTCTGGGCAGGAAAGTGGTGAACGCTGAGAACCAGACACGTAAC-AAGCGCCCCAGTGTTCAGGGAACATGGACGACAGAGCTGAAGATGTGATCATGTGAGTTGACCACGATTGGGTTCTCAGACAAGCTGCTGATGTTCTTTGATGTCGTGATTGCAGAACTGTTTTCATGTGCGTGTCAAGAATTAGTCAGTGCAGCTATTCGACTCACCTTTTTTTAGTGATTACAGTTCAACTTTGTCTTTTTGTTTCGTCCGGTATCTGATAATAACATGC-AACTTGGGTGTTCCTTGTTGTAAAAAAAA]
[+] EMBL BI796766 [CACATCTTCCAGCTTGTTAAGGAAAAGGACCCCCGACTTAGAGGTGGTGACAGAGTTAGTCCGTGGACACGCATCCTAACCTGAAGGGCATTTTACCATAGAATCATAATGAGCGAGATTGCTTTGTGTCCTGAAAATTTAGCGCCCGAGGACATACTATTGCAAGCTACCAGGCTAAGGAATTCTCTGGGCAGGAAAGTGGTGAACGCTGAGAACCAGACACGTAAC AAGCGCCCCAGTGTTCAGGGAACATGGACGACAGAGCTGAAGATGTGATCATGTGAGTTGACCACGATTGGGTTCTCAGACAAGCTGCTGATGTTCTTTGATGTCGTGATTGCAGAACTGTTTTCATGTGCGTGTCAAGAATTAGTCAGTGCAGCTATTCGACTCACCTTTTTTTAGTGATTACAGTTCAACTTTGTCTTTTTGTTTCGTCCGGTATCTGATAATAACATGC AACTTGGGTGTTCCTTGTTGTAAAAAAAA]
[+] EMBL C99504 [ gaACCCCCCACTTAGAGNTGGTGACAGAGTTAGTCCGTGGACA GCANCCTAACCTGAAGGGCA TTTA CA AAAATCATAATGAGCGAG TTG TTTGTGTCC G AAATTTAGCGCCCGAGGACATACTATTGCAAGCTACCAGGCTAAGGAATTCTCTGGGCAGGAAAGTGGTGAA GCTGAGAACCAGACACGTAACAAAGCGCCCCAGTGTTCAGGGAACATGGACGACAGAACTGAAGATGTGATCATGTGAGTTGACCA G TTGGGTTCTCAGACAAGCTGCTGATGTTCTTTGATGTCGTGATTGCAGAACTGTTTTCATATGCGTGTCAAGAATTAGTCAGTGCAGCTATTCGACTCACCTTTTTTTAGTGATTACAGTTCAACTTTGTCTTTTTGTTTCGTCCGGTATCTGATAATAACATGCAAACTTGGGTGTTCCTTGTTGTAAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11171#0 ---------------------------------------------------------GTC 3
consensus_11171#2 ------------------------------------------------------------
consensus_11171#1 CAGGAATTCGGCACGAGGCGCGCCGGCGGCGAGCAAGGTAAGGACTGATCGATTGGCTTG 60
consensus_11171#0 GTCTCCTCCTCCGTTCGCCGTCTCCTCCCCCAACTCGCGCCCGGCGGGAGCAAGCGAAGC 63
consensus_11171#2 ------------------------------------------------------------
consensus_11171#1 GGCCGCTTGCATCCTCGTCTTCCTCATCCGGGGTCTCCGAATTTCCGCGTGCAGCGAAGC 120
consensus_11171#0 GAAGTCCCCGTGTAGCTCCCGGTTTGGATCGACCCCGGCGGCGGCGGCAGGGATGGCGCT 123
consensus_11171#2 ------------------------------------------------------------
consensus_11171#1 GGAGTCCCCGTGTAGCTCCCGGTTTGGATCGACCCCGGCGGCGGCGGCAGGGATGGCGCT 180
consensus_11171#0 GAGGGGCGTTTGGCAGCTGCAGAAGCTCGTGGTGAACTACTGCGATTGGGGAGGGAGCAG 183
consensus_11171#2 ------------------------------------------------------------
consensus_11171#1 GAGGGGCGTTTGGCAGCTGCAGAAGCTCGTGGTGAACTACTGCGATTGGGGAGGGAGCAG 240
consensus_11171#0 CAGGGGGATCAGGGCTTTTATGGAGGCGCATCTTCCAGCTT-TTAAGGAAAAGAACCCCC 242
consensus_11171#2 --------------------------CACATCTTCCAGCTTGTTAAGGAAAAGGACCCCC 34
consensus_11171#1 CAGGGGGATCAGGGCTTTTATGGAGGCGCATCTTCCAGCTT-TTAAGGAAAAGAACCCCC 299
* ************* *********** ******
consensus_11171#0 -ACTTAGAGGTGGTGACAGAGTTAGTCCGTGGACA-GCATCCTAACCTGAAGGGCATTT- 299
consensus_11171#2 GACTTAGAGGTGGTGACAGAGTTAGTCCGTGGACACGCATCCTAACCTGAAGGGCATTTT 94
consensus_11171#1 -ACTTAGAGGTGGTGACAGAGTTAGTCCGTGGACA-GCATCCTAACCTGAAGGGCATTT- 356
********************************** ***********************
consensus_11171#0 ACAA--AAATCATAATGAGCGAG-TTG-TTTGTGTCC--GAAATTTAGCGCCCGAGGACA 353
consensus_11171#2 ACCATAGAATCATAATGAGCGAGATTGCTTTGTGTCCTGAAAATTTAGCGCCCGAGGACA 154
consensus_11171#1 ACAA--AAATCATAATGAGCGAG-TTG-TTTGTGTCC--GAAATTTAACGCCCCAGGACA 410
** * **************** *** ********* ******* ***** ******
consensus_11171#0 TACTATTGCAAGCTACCAGGCTAAGGAATTCTCTGGGCAGGAAAGTGGTGAA-GCTGAGA 412
consensus_11171#2 TACTATTGCAAGCTACCAGGCTAAGGAATTCTCTGGGCAGGAAAGTGGTGAACGCTGAGA 214
consensus_11171#1 TACTATTGCAAGCTACCACGCTAAGGGATTCTCTGGGCAAGAAAGTGGTGAA-GCTTGAA 469
****************** ******* ************ ************ *** *
consensus_11171#0 ACCAGACACGTAACAAAGCGCCCC-AGTGTTCAGGGAACATGGACGACAGAACTGAAGAT 471
consensus_11171#2 ACCAGACACGTAACAA-GCGCCCC-AGTGTTCAGGGAACATGGACGACAGAGCTGAAGAT 272
consensus_11171#1 ACCACACACGTTACAAAGCGCCCCCATTGGTTTAGGAACATTGACCACAAAACTGGAGAT 529
**** ****** **** ******* * ** * ******* *** *** * *** ****
consensus_11171#0 GTGATCATGTGAGTTGACCA--GTTGGGTTCTCAGACAAGCTGCTGATGTTCTTTGATGT 529
consensus_11171#2 GTGATCATGTGAGTTGACCACGATTGGGTTCTCAGACAAGCTGCTGATGTTCTTTGATGT 332
consensus_11171#1 GTGATCATGT-------------------------------------------------- 539
**********
consensus_11171#0 CGTGATTGCAGAACTGTTTTCATATGCGTGTCAAGAATTAGTCAGTGCAGCTATTCGACT 589
consensus_11171#2 CGTGATTGCAGAACTGTTTTCATGTGCGTGTCAAGAATTAGTCAGTGCAGCTATTCGACT 392
consensus_11171#1 ------------------------------------------------------------
consensus_11171#0 CACCTTTTTTTAGTGATTACAGTTCAACTTTGTCTTTTTGTTTCGTCCGGTATCTGATAA 649
consensus_11171#2 CACCTTTTTTTAGTGATTACAGTTCAACTTTGTCTTTTTGTTTCGTCCGGTATCTGATAA 452
consensus_11171#1 ------------------------------------------------------------
consensus_11171#0 TAACATGCAAACTTGGGTGTTA------AAAAAAAAAA 681
consensus_11171#2 TAACATGCAA-CTTGGGTGTTCCTTGTTGTAAAAAAAA 489
consensus_11171#1 --------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||