These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11182#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 778 fasta sequence [GCTTTGCTCCCCTTCCACGACTTTAGCCATCTTGGCTTGCAAGGTGAGAAGAGCAGATCGATCGAGCTGAGAGCTGGTCTCAGGTGTGTGTTGCGTGAGTGTGTTCGAAGACGAACGATGAAGACCCGCCGGGCCGCGCTGCTAATGCTTCTCCTCCTGGTGGTGGTGGCGGCCGCCTCGTGGCCGCAGCCTTGCGACGCTGCTTCAGGGTTCTGCGGGAGCAAGTGCGCGGTGCGGTGCGGGAGGGGGAGGGGGCGGGGGAGCGGGTGCCTGAGGTCGTGCG-GGCTGT-GCTG-CGAGGAGTGCAACTGCGTGCCCACGGGGAGT-GGGTCGACGCGCGACGAGTGCCCCTGCTA-CCGCGACATGCTCACCGCCGGCCCCAGGAAGAGGCCCAAGTGCCCCTGAATCCTCCCCATCCATCTCCATCTCATCGATTACCATCAACTTCATCTCATTTTCTTGTACTTGAAATTAGCTACTAGTACGTGGTTGTGTATACGTCGCAGGTGTGTATGTATGTATGTATATATATGCGTATGTTGTCATGCTGCGTAGTTATAGTTAGTAGTCCTACCTACTCCAGTACGTACGTGTTGATGCCTGTTAATATGGCTGTATGGCTAGCTAAGCTGTGTGCCTGTGTCGATTTGTAAAGTTGTACTAGTAGGTAGTTGTACTACTTGCAGCGCACGTACTGTTTGTTTGTCTGTTGTTAAATTTCGTGTTAACTATGAACAGGGGATATGCCGTATGCGCTTTACCTGAGGAAAAAAAAAAAAAA] [+] EMBL AK070268 [GCTTTGCTCCCCTTCCACGACTTTAGCCATCTTGGCTTGCAAGGTGAGAAGAGCAGATCGATCGAGCTGAGAGCTGGTCTCAGGTGTGTGTTGCGTGAGTGTGTTCGAAGACGAACGATGAAGACCCGCCGGGCCGCGCTGCTAATGCTTCTCCTCCTGGTGGTGGTGGCGGCCGCCTCGTGGCCGCAGCCTTGCGACGCTGCTTCAGGGTTCTGCGGGAGCAAGTGCGCGGTGCGGTGCGGGAGGGGGAGGGGGCGGGGGAGCGGGTGCCTGAGGTCGTGCG GGCTGT GCTG CGAGGAGTGCAACTGCGTGCCCACGGGGAGT GGGTCGACGCGCGACGAGTGCCCCTGCTA CCGCGACATGCTCACCGCCGGCCCCAGGAAGAGGCCCAAGTGCCCCTGAATCCTCCCCATCCATCTCCATCTCATCGATTACCATCAACTTCATCTCATTTTCTTGTACTTGAAATTAGCTACTAGTACGTGGTTGTGTATACGTCGCAGGTGTGTATGTATGTATGTATATATATGCGTATGTTGTCATGCTGCGTAGTTATAGTTAGTAGTCCTACCTACTCCAGTACGTACGTGTTGATGCCTGTTAATATGGCTGTATGGCTAGCTAAGCTGTGTGCCTGTGTCGATTTGTAAAGTTGTACTAGTAGGTAGTTGTACTACTTGCAGCGCACGTACTGTTTGTTTGTCTGTTGTTAAATTTCGTGTTAACTATGAACAGGGGATATGCCGTATGCGCT ] [-] EMBL AU031465 [ TGGCCGCAGCCTTGCGACGCTGCTTCAGGGTTCTGCGGGAGCAAGTGCGCGGTNCGGTGCGGGAGGGGGAGGGGGCGGGGGAGCGGNTGCCTGAGGTCGTGCG GGCTGT GCTG CGAGGAGTGCAACTGCGTGCCCACGGGGAGT GGGTCGACGCGCGACGAGTGCCCCTGCTA CCGCGACATGCTCACCGCCGGCCCCAGGAAGAGGCCCAAGTGCCCCTGAATCCTCCCCATCCATCTCCATCTCATCGATTACCATCAACTTCATCTCATTTTCTTGTACTTGAAATTAGCTACTAGTACGTGGTTGTGTATACGTCGCAGGTGTGTATGTATGTATGTATATATATGCGTATGTTGTCATGCTGCGTAGTTATAGTTAGTAGTCCTACCTACTCCAGTACGTACGTGTTGATGCCTGTTAATATGGCTGTATGGCTAGCTAAGCTGTGTGCCTGTGTCGATTTGTAAAGTTGTACTAGTAGGTAGTTGTACTACTTGCAGCGCACGTACTGTTTGTTTG ] [+] EMBL AU162255 [ TGCTTCAGGGTTCTGCGGGA CAAGTGCGCGGTGCGGTGCGGGNCGNGGANGGGGCGGGGGAGCGGGTGCCTGAGGTCGTGCG GGCTGT GCTG CGAGGAGTGCAACTGCGTGCCCACGGGGAGT GGGTCGACGCGCGACGAGTGCCCCTGCTA CCGCGACATGCTCACCGCCGGCCCCAGGAAGAGGCCCAAGTGCCCCTGAATCCTCCCCATCCATCTCCATCTCATCGATTACCATCAACTTCATCTCATTTTCTTGTACTTGAAATTAGCTACTAGTACGTGGTTGTGTATACGTCGCAGGTGTGTATGTATGTATGTATATATATGCGTATGTTGTCATGCTGCGTAGTTATAGTTAGTAGTCCTACCTACTCCAGTACGTACGTGTTGATGCCTGTTAATATGGCTGTATGGCTAGCTAAGCTGTNTGCCTGTGTCGATTTGTAAAGTTGTACTAGTAGGTAGTTGTACTACTTGCAGCGCACGTACTGTTTGTTTGTCTGTTGTTAAAaaaaaaaaa ] [+] EMBL AU029415 [ CGTGCGNGGCTGTGGCTGCCGAGGAGTNCAACTGCGTGCCCACGGGGAGTGGGGTCGACGCGCGACGAGTGCCCCTGCTACCCGCGACATGCTCACCGCCGGCCCCAGGAAGAGGCCCAAGTGCCCCTGAATCCTCCCCATCCATCTCCATCTCATCGATTACCATCAACTTCATCTCATTTTCTTGTACTTGAAATTAGCTACTAGTACGTGGTTGTGTATACGTCGCAGGTGTGTATGTATGTATGTATATATATGCGTATGTTGTCATGCTGCGTAGTTATAGTTAGTAGTCCTACCTACTCCAGTACGTACGTGTTGATGCCTGTTAATATGGCTGTATGGCTAGCTAAGCTGTGTGCCTGTGTCGATTTGTAAAGTTGTACTAGTAGGTAGTTGTANTACTTGCAGCGCACGTACTGTTTGTTTGTCTGTTGTTAAATTTCGTGTTAACTATGAACAGGGGATATGCCGTATGCGCTTTACCTGAGGAAAAAAA ] [+] EMBL C74073 [ TGCG GGCTGT GCTG CGAGGAGTGCAACTGCGTGCCCACGGGGAGT GGGTCGACGCGCGACGAGTGCCCCNNCTA CCGCGACATGCTCACCGNCGNCCCCAGGAAGAGGCCCAAGTGCCCCTGAATCCTNCCCATCCATCTCCATCTCATCGATTACCATCAACTTCATCTCATTTTCTTGTACTNGAAATNAGCTACTAGTACGTGGTTGTGTATACGTCGCAGGTGTGTATGTATGTATGTATATATATGCGTATGNTNTCATGCTGCGTNGTTATAGTAAGTAGTCCTACCTACTNCAGTACGTACGTGTGGATGCCTGTTAAT ] [+] EMBL CF328166 [ TCTCATTTTCTTGTACTTGAAATTAGCTACTAGTACGTGGTTGTGTATACGTCGCAGGTGTGTATGTATGTATGTATATATATGCGTATGTTGTCATGCTGCGTAGTTATAGTTAGTAGTCCTACCTACTCCAGTACGTACGTGTTGATGCCTGTTAATATGGCTGTATGGCTAGCTAAGCTGTGTGCCTGTGTCGATTTGTAAAGTTGTACTAGTAGGTAGTTGTACTACTTGCAGCGCACGTACTGTTTGTTTGTCTGTTGTTAAATTTCGTGTTAACTATGAACAGGGGATATGCCGTATGCGCTTTACCTGAGGAAAAAAAAAAAAA ] [-] EMBL CF328165 [ CTCATTTTCTTGTACTTGAAATTAGCTACTAGTACGTGGTTGTGTATACGTCGCAGGTGTGTATGTATGTATGTATATATATGCGTATGTTGTCATGCTGCGTAGTTATAGTTAGTAGTCCTACCTACTCCAGTACGTACGTGTTGATGCCTGTTAATATGGCTGTATGGCTAGCTAAGCTGTGTGCCTGTGTCGATTTGTAAAGTTGTACTAGTAGGTAGTTGTACTACTTGCAGCGCACGTACTGTTTGTTTGTCTGTTGTTAAATTTCGTGTTAACTATGAACAGGGGATATGCCGTATGCGCTTTACCTGAGGAAAAAAAAAAAAAA] consensusID : consensus_11182#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 375 fasta sequence [CCCCTGACCGCGACATCTAACNGCCGGCCCCCAGGAAAGAGGCCNAAGTGCCCCTGAATCCTCCCCATCCATCTCCATCTCATCGATTACCATCAACTTCATCTCATTTTCTTGTACTTGAAATTAGCTACTAGTACGTGGTTGTGTATACGTCGCAGGTGTGTATGTATGTATGTATATATATGCGTATGTTGTCATGCTGCGTAGTTATAGTTAGTAGTCCTACCTACTCCAGTACGTACGTGTTGATGCCTGTTAATATGGCTGTATGGCTAGCTAAGCTGTGTGCCTGTGTCGATTTGTAAAGTTGTACTAGTAGGTAGTTGTACTACTTGCAGCGCACGTACATGTTTGTTCTGATCATCGTCTNGATNT] [-] EMBL AU063685 [CCCCTGACCGCGACATCTAACNGCCGGCCCCCAGGAAAGAGGCCNAAGTGCCCCTGAATCCTCCCCATCCATCTCCATCTCATCGATTACCATCAACTTCATCTCATTTTCTTGTACTTGAAATTAGCTACTAGTACGTGGTTGTGTATACGTCGCAGGTGTGTATGTATGTATGTATATATATGCGTATGTTGTCATGCTGCGTAGTTATAGTTAGTAGTCCTACCTACTCCAGTACGTACGTGTTGATGCCTGTTAATATGGCTGTATGGCTAGCTAAGCTGTGTGCCTGTGTCGATTTGTAAAGTTGTACTAGTAGGTAGTTGTACTACTTGCAGCGCACGTACATGTTTGTTCTGATCATCGTCTNGATNT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11182#0 GCTTTGCTCCCCTTCCACGACTTTAGCCATCTTGGCTTGCAAGGTGAGAAGAGCAGATCG 60 consensus_11182#1 ------------------------------------------------------------ consensus_11182#0 ATCGAGCTGAGAGCTGGTCTCAGGTGTGTGTTGCGTGAGTGTGTTCGAAGACGAACGATG 120 consensus_11182#1 ------------------------------------------------------------ consensus_11182#0 AAGACCCGCCGGGCCGCGCTGCTAATGCTTCTCCTCCTGGTGGTGGTGGCGGCCGCCTCG 180 consensus_11182#1 ------------------------------------------------------------ consensus_11182#0 TGGCCGCAGCCTTGCGACGCTGCTTCAGGGTTCTGCGGGAGCAAGTGCGCGGTGCGGTGC 240 consensus_11182#1 ------------------------------------------------------------ consensus_11182#0 GGGAGGGGGAGGGGGCGGGGGAGCGGGTGCCTGAGGTCGTGCGGGCTGTGCTGCGAGGAG 300 consensus_11182#1 ------------------------------------------------------------ consensus_11182#0 TGCAACTGCGTGCCCACGGGGAGTGGGTCGACGCGCGACGAGTGCCCCTGCTACCGCGAC 360 consensus_11182#1 --------------------------------------------CCCCTG--ACCGCGAC 14 ****** ******** consensus_11182#0 ATGCTCACCGCCGGCCCC--AGGAAGAGGCCCAAGTGCCCCTGAATCCTCCCCATCCATC 418 consensus_11182#1 AT-CTAACNGCCGGCCCCCAGGAAAGAGGCCNAAGTGCCCCTGAATCCTCCCCATCCATC 73 ** ** ** ********* * ******** **************************** consensus_11182#0 TCCATCTCATCGATTACCATCAACTTCATCTCATTTTCTTGTACTTGAAATTAGCTACTA 478 consensus_11182#1 TCCATCTCATCGATTACCATCAACTTCATCTCATTTTCTTGTACTTGAAATTAGCTACTA 133 ************************************************************ consensus_11182#0 GTACGTGGTTGTGTATACGTCGCAGGTGTGTATGTATGTATGTATATATATGCGTATGTT 538 consensus_11182#1 GTACGTGGTTGTGTATACGTCGCAGGTGTGTATGTATGTATGTATATATATGCGTATGTT 193 ************************************************************ consensus_11182#0 GTCATGCTGCGTAGTTATAGTTAGTAGTCCTACCTACTCCAGTACGTACGTGTTGATGCC 598 consensus_11182#1 GTCATGCTGCGTAGTTATAGTTAGTAGTCCTACCTACTCCAGTACGTACGTGTTGATGCC 253 ************************************************************ consensus_11182#0 TGTTAATATGGCTGTATGGCTAGCTAAGCTGTGTGCCTGTGTCGATTTGTAAAGTTGTAC 658 consensus_11182#1 TGTTAATATGGCTGTATGGCTAGCTAAGCTGTGTGCCTGTGTCGATTTGTAAAGTTGTAC 313 ************************************************************ consensus_11182#0 TAGTAGGTAGTTGTACTACTTGCAGCGCACGTAC-TGTTTGTT-TGTCTGTTGT-TAAAT 715 consensus_11182#1 TAGTAGGTAGTTGTACTACTTGCAGCGCACGTACATGTTTGTTCTGATCATCGTCTNGAT 373 ********************************** ******** ** * ** * ** consensus_11182#0 TTCGTGTTAACTATGAACAGGGGATATGCCGTATGCGCTTTACCTGAGGAAAAAAAAAAA 775 consensus_11182#1 NT---------------------------------------------------------- 375 * consensus_11182#0 AAA 778 consensus_11182#1 --- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||