cluster # 11182

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Oryza sativa
cluster # 11182 cluster # 11182 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11182#0 length = 778 sequences # 7

consensus_11182#1 length = 375 sequences # 1

consensusID : consensus_11182#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 778
fasta sequence

                              [GCTTTGCTCCCCTTCCACGACTTTAGCCATCTTGGCTTGCAAGGTGAGAAGAGCAGATCGATCGAGCTGAGAGCTGGTCTCAGGTGTGTGTTGCGTGAGTGTGTTCGAAGACGAACGATGAAGACCCGCCGGGCCGCGCTGCTAATGCTTCTCCTCCTGGTGGTGGTGGCGGCCGCCTCGTGGCCGCAGCCTTGCGACGCTGCTTCAGGGTTCTGCGGGAGCAAGTGCGCGGTGCGGTGCGGGAGGGGGAGGGGGCGGGGGAGCGGGTGCCTGAGGTCGTGCG-GGCTGT-GCTG-CGAGGAGTGCAACTGCGTGCCCACGGGGAGT-GGGTCGACGCGCGACGAGTGCCCCTGCTA-CCGCGACATGCTCACCGCCGGCCCCAGGAAGAGGCCCAAGTGCCCCTGAATCCTCCCCATCCATCTCCATCTCATCGATTACCATCAACTTCATCTCATTTTCTTGTACTTGAAATTAGCTACTAGTACGTGGTTGTGTATACGTCGCAGGTGTGTATGTATGTATGTATATATATGCGTATGTTGTCATGCTGCGTAGTTATAGTTAGTAGTCCTACCTACTCCAGTACGTACGTGTTGATGCCTGTTAATATGGCTGTATGGCTAGCTAAGCTGTGTGCCTGTGTCGATTTGTAAAGTTGTACTAGTAGGTAGTTGTACTACTTGCAGCGCACGTACTGTTTGTTTGTCTGTTGTTAAATTTCGTGTTAACTATGAACAGGGGATATGCCGTATGCGCTTTACCTGAGGAAAAAAAAAAAAAA]

[+] EMBL AK070268             [GCTTTGCTCCCCTTCCACGACTTTAGCCATCTTGGCTTGCAAGGTGAGAAGAGCAGATCGATCGAGCTGAGAGCTGGTCTCAGGTGTGTGTTGCGTGAGTGTGTTCGAAGACGAACGATGAAGACCCGCCGGGCCGCGCTGCTAATGCTTCTCCTCCTGGTGGTGGTGGCGGCCGCCTCGTGGCCGCAGCCTTGCGACGCTGCTTCAGGGTTCTGCGGGAGCAAGTGCGCGGTGCGGTGCGGGAGGGGGAGGGGGCGGGGGAGCGGGTGCCTGAGGTCGTGCG GGCTGT GCTG CGAGGAGTGCAACTGCGTGCCCACGGGGAGT GGGTCGACGCGCGACGAGTGCCCCTGCTA CCGCGACATGCTCACCGCCGGCCCCAGGAAGAGGCCCAAGTGCCCCTGAATCCTCCCCATCCATCTCCATCTCATCGATTACCATCAACTTCATCTCATTTTCTTGTACTTGAAATTAGCTACTAGTACGTGGTTGTGTATACGTCGCAGGTGTGTATGTATGTATGTATATATATGCGTATGTTGTCATGCTGCGTAGTTATAGTTAGTAGTCCTACCTACTCCAGTACGTACGTGTTGATGCCTGTTAATATGGCTGTATGGCTAGCTAAGCTGTGTGCCTGTGTCGATTTGTAAAGTTGTACTAGTAGGTAGTTGTACTACTTGCAGCGCACGTACTGTTTGTTTGTCTGTTGTTAAATTTCGTGTTAACTATGAACAGGGGATATGCCGTATGCGCT                        ]
[-] EMBL AU031465             [                                                                                                                                                                                    TGGCCGCAGCCTTGCGACGCTGCTTCAGGGTTCTGCGGGAGCAAGTGCGCGGTNCGGTGCGGGAGGGGGAGGGGGCGGGGGAGCGGNTGCCTGAGGTCGTGCG GGCTGT GCTG CGAGGAGTGCAACTGCGTGCCCACGGGGAGT GGGTCGACGCGCGACGAGTGCCCCTGCTA CCGCGACATGCTCACCGCCGGCCCCAGGAAGAGGCCCAAGTGCCCCTGAATCCTCCCCATCCATCTCCATCTCATCGATTACCATCAACTTCATCTCATTTTCTTGTACTTGAAATTAGCTACTAGTACGTGGTTGTGTATACGTCGCAGGTGTGTATGTATGTATGTATATATATGCGTATGTTGTCATGCTGCGTAGTTATAGTTAGTAGTCCTACCTACTCCAGTACGTACGTGTTGATGCCTGTTAATATGGCTGTATGGCTAGCTAAGCTGTGTGCCTGTGTCGATTTGTAAAGTTGTACTAGTAGGTAGTTGTACTACTTGCAGCGCACGTACTGTTTGTTTG                                                                            ]
[+] EMBL AU162255             [                                                                                                                                                                                                        TGCTTCAGGGTTCTGCGGGA CAAGTGCGCGGTGCGGTGCGGGNCGNGGANGGGGCGGGGGAGCGGGTGCCTGAGGTCGTGCG GGCTGT GCTG CGAGGAGTGCAACTGCGTGCCCACGGGGAGT GGGTCGACGCGCGACGAGTGCCCCTGCTA CCGCGACATGCTCACCGCCGGCCCCAGGAAGAGGCCCAAGTGCCCCTGAATCCTCCCCATCCATCTCCATCTCATCGATTACCATCAACTTCATCTCATTTTCTTGTACTTGAAATTAGCTACTAGTACGTGGTTGTGTATACGTCGCAGGTGTGTATGTATGTATGTATATATATGCGTATGTTGTCATGCTGCGTAGTTATAGTTAGTAGTCCTACCTACTCCAGTACGTACGTGTTGATGCCTGTTAATATGGCTGTATGGCTAGCTAAGCTGTNTGCCTGTGTCGATTTGTAAAGTTGTACTAGTAGGTAGTTGTACTACTTGCAGCGCACGTACTGTTTGTTTGTCTGTTGTTAAAaaaaaaaaa                                                       ]
[+] EMBL AU029415             [                                                                                                                                                                                                                                                                                     CGTGCGNGGCTGTGGCTGCCGAGGAGTNCAACTGCGTGCCCACGGGGAGTGGGGTCGACGCGCGACGAGTGCCCCTGCTACCCGCGACATGCTCACCGCCGGCCCCAGGAAGAGGCCCAAGTGCCCCTGAATCCTCCCCATCCATCTCCATCTCATCGATTACCATCAACTTCATCTCATTTTCTTGTACTTGAAATTAGCTACTAGTACGTGGTTGTGTATACGTCGCAGGTGTGTATGTATGTATGTATATATATGCGTATGTTGTCATGCTGCGTAGTTATAGTTAGTAGTCCTACCTACTCCAGTACGTACGTGTTGATGCCTGTTAATATGGCTGTATGGCTAGCTAAGCTGTGTGCCTGTGTCGATTTGTAAAGTTGTACTAGTAGGTAGTTGTANTACTTGCAGCGCACGTACTGTTTGTTTGTCTGTTGTTAAATTTCGTGTTAACTATGAACAGGGGATATGCCGTATGCGCTTTACCTGAGGAAAAAAA       ]
[+] EMBL C74073               [                                                                                                                                                                                                                                                                                       TGCG GGCTGT GCTG CGAGGAGTGCAACTGCGTGCCCACGGGGAGT GGGTCGACGCGCGACGAGTGCCCCNNCTA CCGCGACATGCTCACCGNCGNCCCCAGGAAGAGGCCCAAGTGCCCCTGAATCCTNCCCATCCATCTCCATCTCATCGATTACCATCAACTTCATCTCATTTTCTTGTACTNGAAATNAGCTACTAGTACGTGGTTGTGTATACGTCGCAGGTGTGTATGTATGTATGTATATATATGCGTATGNTNTCATGCTGCGTNGTTATAGTAAGTAGTCCTACCTACTNCAGTACGTACGTGTGGATGCCTGTTAAT                                                                                                                                                                             ]
[+] EMBL CF328166             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TCTCATTTTCTTGTACTTGAAATTAGCTACTAGTACGTGGTTGTGTATACGTCGCAGGTGTGTATGTATGTATGTATATATATGCGTATGTTGTCATGCTGCGTAGTTATAGTTAGTAGTCCTACCTACTCCAGTACGTACGTGTTGATGCCTGTTAATATGGCTGTATGGCTAGCTAAGCTGTGTGCCTGTGTCGATTTGTAAAGTTGTACTAGTAGGTAGTTGTACTACTTGCAGCGCACGTACTGTTTGTTTGTCTGTTGTTAAATTTCGTGTTAACTATGAACAGGGGATATGCCGTATGCGCTTTACCTGAGGAAAAAAAAAAAAA ]
[-] EMBL CF328165             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CTCATTTTCTTGTACTTGAAATTAGCTACTAGTACGTGGTTGTGTATACGTCGCAGGTGTGTATGTATGTATGTATATATATGCGTATGTTGTCATGCTGCGTAGTTATAGTTAGTAGTCCTACCTACTCCAGTACGTACGTGTTGATGCCTGTTAATATGGCTGTATGGCTAGCTAAGCTGTGTGCCTGTGTCGATTTGTAAAGTTGTACTAGTAGGTAGTTGTACTACTTGCAGCGCACGTACTGTTTGTTTGTCTGTTGTTAAATTTCGTGTTAACTATGAACAGGGGATATGCCGTATGCGCTTTACCTGAGGAAAAAAAAAAAAAA]




>consensus_11182#0
GCTTTGCTCCCCTTCCACGACTTTAGCCATCTTGGCTTGCAAGGTGAGAAGAGCAGATCG
ATCGAGCTGAGAGCTGGTCTCAGGTGTGTGTTGCGTGAGTGTGTTCGAAGACGAACGATG
AAGACCCGCCGGGCCGCGCTGCTAATGCTTCTCCTCCTGGTGGTGGTGGCGGCCGCCTCG
TGGCCGCAGCCTTGCGACGCTGCTTCAGGGTTCTGCGGGAGCAAGTGCGCGGTGCGGTGC
GGGAGGGGGAGGGGGCGGGGGAGCGGGTGCCTGAGGTCGTGCGGGCTGTGCTGCGAGGAG
TGCAACTGCGTGCCCACGGGGAGTGGGTCGACGCGCGACGAGTGCCCCTGCTACCGCGAC
ATGCTCACCGCCGGCCCCAGGAAGAGGCCCAAGTGCCCCTGAATCCTCCCCATCCATCTC
CATCTCATCGATTACCATCAACTTCATCTCATTTTCTTGTACTTGAAATTAGCTACTAGT
ACGTGGTTGTGTATACGTCGCAGGTGTGTATGTATGTATGTATATATATGCGTATGTTGT
CATGCTGCGTAGTTATAGTTAGTAGTCCTACCTACTCCAGTACGTACGTGTTGATGCCTG
TTAATATGGCTGTATGGCTAGCTAAGCTGTGTGCCTGTGTCGATTTGTAAAGTTGTACTA
GTAGGTAGTTGTACTACTTGCAGCGCACGTACTGTTTGTTTGTCTGTTGTTAAATTTCGT
GTTAACTATGAACAGGGGATATGCCGTATGCGCTTTACCTGAGGAAAAAAAAAAAAAA

consensusID : consensus_11182#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 375
fasta sequence

                              [CCCCTGACCGCGACATCTAACNGCCGGCCCCCAGGAAAGAGGCCNAAGTGCCCCTGAATCCTCCCCATCCATCTCCATCTCATCGATTACCATCAACTTCATCTCATTTTCTTGTACTTGAAATTAGCTACTAGTACGTGGTTGTGTATACGTCGCAGGTGTGTATGTATGTATGTATATATATGCGTATGTTGTCATGCTGCGTAGTTATAGTTAGTAGTCCTACCTACTCCAGTACGTACGTGTTGATGCCTGTTAATATGGCTGTATGGCTAGCTAAGCTGTGTGCCTGTGTCGATTTGTAAAGTTGTACTAGTAGGTAGTTGTACTACTTGCAGCGCACGTACATGTTTGTTCTGATCATCGTCTNGATNT]

[-] EMBL AU063685             [CCCCTGACCGCGACATCTAACNGCCGGCCCCCAGGAAAGAGGCCNAAGTGCCCCTGAATCCTCCCCATCCATCTCCATCTCATCGATTACCATCAACTTCATCTCATTTTCTTGTACTTGAAATTAGCTACTAGTACGTGGTTGTGTATACGTCGCAGGTGTGTATGTATGTATGTATATATATGCGTATGTTGTCATGCTGCGTAGTTATAGTTAGTAGTCCTACCTACTCCAGTACGTACGTGTTGATGCCTGTTAATATGGCTGTATGGCTAGCTAAGCTGTGTGCCTGTGTCGATTTGTAAAGTTGTACTAGTAGGTAGTTGTACTACTTGCAGCGCACGTACATGTTTGTTCTGATCATCGTCTNGATNT]




>consensus_11182#1
CCCCTGACCGCGACATCTAACNGCCGGCCCCCAGGAAAGAGGCCNAAGTGCCCCTGAATC
CTCCCCATCCATCTCCATCTCATCGATTACCATCAACTTCATCTCATTTTCTTGTACTTG
AAATTAGCTACTAGTACGTGGTTGTGTATACGTCGCAGGTGTGTATGTATGTATGTATAT
ATATGCGTATGTTGTCATGCTGCGTAGTTATAGTTAGTAGTCCTACCTACTCCAGTACGT
ACGTGTTGATGCCTGTTAATATGGCTGTATGGCTAGCTAAGCTGTGTGCCTGTGTCGATT
TGTAAAGTTGTACTAGTAGGTAGTTGTACTACTTGCAGCGCACGTACATGTTTGTTCTGA
TCATCGTCTNGATNT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11182#0      GCTTTGCTCCCCTTCCACGACTTTAGCCATCTTGGCTTGCAAGGTGAGAAGAGCAGATCG 60
consensus_11182#1      ------------------------------------------------------------
                                                                                   

consensus_11182#0      ATCGAGCTGAGAGCTGGTCTCAGGTGTGTGTTGCGTGAGTGTGTTCGAAGACGAACGATG 120
consensus_11182#1      ------------------------------------------------------------
                                                                                   

consensus_11182#0      AAGACCCGCCGGGCCGCGCTGCTAATGCTTCTCCTCCTGGTGGTGGTGGCGGCCGCCTCG 180
consensus_11182#1      ------------------------------------------------------------
                                                                                   

consensus_11182#0      TGGCCGCAGCCTTGCGACGCTGCTTCAGGGTTCTGCGGGAGCAAGTGCGCGGTGCGGTGC 240
consensus_11182#1      ------------------------------------------------------------
                                                                                   

consensus_11182#0      GGGAGGGGGAGGGGGCGGGGGAGCGGGTGCCTGAGGTCGTGCGGGCTGTGCTGCGAGGAG 300
consensus_11182#1      ------------------------------------------------------------
                                                                                   

consensus_11182#0      TGCAACTGCGTGCCCACGGGGAGTGGGTCGACGCGCGACGAGTGCCCCTGCTACCGCGAC 360
consensus_11182#1      --------------------------------------------CCCCTG--ACCGCGAC 14
                                                                   ******  ********

consensus_11182#0      ATGCTCACCGCCGGCCCC--AGGAAGAGGCCCAAGTGCCCCTGAATCCTCCCCATCCATC 418
consensus_11182#1      AT-CTAACNGCCGGCCCCCAGGAAAGAGGCCNAAGTGCCCCTGAATCCTCCCCATCCATC 73
                       ** ** ** *********   * ******** ****************************

consensus_11182#0      TCCATCTCATCGATTACCATCAACTTCATCTCATTTTCTTGTACTTGAAATTAGCTACTA 478
consensus_11182#1      TCCATCTCATCGATTACCATCAACTTCATCTCATTTTCTTGTACTTGAAATTAGCTACTA 133
                       ************************************************************

consensus_11182#0      GTACGTGGTTGTGTATACGTCGCAGGTGTGTATGTATGTATGTATATATATGCGTATGTT 538
consensus_11182#1      GTACGTGGTTGTGTATACGTCGCAGGTGTGTATGTATGTATGTATATATATGCGTATGTT 193
                       ************************************************************

consensus_11182#0      GTCATGCTGCGTAGTTATAGTTAGTAGTCCTACCTACTCCAGTACGTACGTGTTGATGCC 598
consensus_11182#1      GTCATGCTGCGTAGTTATAGTTAGTAGTCCTACCTACTCCAGTACGTACGTGTTGATGCC 253
                       ************************************************************

consensus_11182#0      TGTTAATATGGCTGTATGGCTAGCTAAGCTGTGTGCCTGTGTCGATTTGTAAAGTTGTAC 658
consensus_11182#1      TGTTAATATGGCTGTATGGCTAGCTAAGCTGTGTGCCTGTGTCGATTTGTAAAGTTGTAC 313
                       ************************************************************

consensus_11182#0      TAGTAGGTAGTTGTACTACTTGCAGCGCACGTAC-TGTTTGTT-TGTCTGTTGT-TAAAT 715
consensus_11182#1      TAGTAGGTAGTTGTACTACTTGCAGCGCACGTACATGTTTGTTCTGATCATCGTCTNGAT 373
                       ********************************** ******** **    * ** *  **

consensus_11182#0      TTCGTGTTAACTATGAACAGGGGATATGCCGTATGCGCTTTACCTGAGGAAAAAAAAAAA 775
consensus_11182#1      NT---------------------------------------------------------- 375
                        *                                                          

consensus_11182#0      AAA 778
consensus_11182#1      ---