These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11184#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1186 fasta sequence [ACTTCTCCTCTCTGACCACAGCACACACGCAACACCGGGACGGGCGATCCGGAAGGTTCTGGAACCTTCTAGAGGCTCGTAGGAGCCTCCGGCGGAACCCCTCTCGCCTCGCCTCGCCTCCGATGGGCTCGAAGCCGCCGCCGCCGCCGCAGCCCAGCGTCTCCTTCAAGCTCGTCCTCCTCGGCGACGGGAGAGTAGGCAAAACATCTCTTGTGCTGCGGTATGTGAATGATGTCTTCTCAGACAAACAGGAAGCAACTGTTCAAGCTTCATATTTGACAAAGCGCCTTGTTGTTGAAGGTGTGCCTATTACGCTCTCTATCTGGGATACAGCTGGACAAGAGAAGTTCCATGCACTAGGCCCTATATACTATCGTGATGCAGACGCTGCTCTTTTAGTATATGACATCACAGACAATGATACTTTTCTTCGTGTCACAAAGTGGGTGAAAGAGCTTAAGCAAATGGCAAATAAAGATATTGTTATGGCCATTGCAGCAAATAAAAGTGACCTGGTTAGATCAAAACACATAGACACTAATGAAGCAGCAAGCTATGCAGAAAGTATTGGGGCAACTCTCTTTGTTACTTCTGCCAAAGCTGGTACTGGGATTGATGATATCTTCAGTGACATAGCCAAGAGATTATTAGAGAGAAGAAAAAACAGCTCCGATGGCTTGTCACTGGCTCATCCAAAGAAAGGCATTTTAATCGTCGACGATGAACCTGAGAAAGAACCTCCACCAAAGTGCTGCTCATAGCGAGATTCCAATGCAAATCACGTGGGCATAATGTCATAGAAACCTGCAATTGATATGTGAAGGATCAAATCCTTGCATTAACTTTGCTCATGCTCTTTTGGAGCTCAGGAGCAATGCAAGTGTATACTGGTTGATTATTTTTAGCTTGTGTAAATACTAAACTCAGTTCATGAAATTGTTGTCAAATATAGTTGTTCGATGATGACGATTCGATATGCCGAAGAAGTTCATGGCCCTTTGTATATCTGTAACTCACAGGTTGCTTATTTACTAGCTGTTGTTTTGAGGGGGTTATTTTGATCATGTGCGTCGAAATAATTGTGTCGTGTTGACTGCTGAGTGTACATGTATCGTGGTTATTCCATCTGAACCTGCAATGTAAAGCTTCCGTCCCAATTCCCAAAAAAACAAAAAAAAAAAAAAAA] [+] EMBL CF314178 [ACTTCTCCTCTCTGACCACAGCACACACGCAACACCGGGACGGGCGATCCGGAAGGTTCTGGAACCTTCTAGAGGCTCGTAGGAGCCTCCGGCGGAACCCCTCTCGCCTCGCCTCGCCTCCGATGGGCTCGAAGCCGCCGCCGCCGCCGCAGCCCAGCGTCTCCTTCAAGCTCGTCCTCCTCGGCGACGGGAGAGTAGGCAAAACATCTCTTGTGCTGCGGTATGTGAATGATGTCTTCTCAGACAAACAGGAAGCAACTGTTCAAGCTTCATATTTGACAAAGCGCCTTGTTGTTGAAGGTGTGCCTATTACGCTCTCTATCTGGGATACAGCTGGACAAGAGAAGTTCCATGCACTAGGCCCTATATACTATCGTGATGCAGACGCTGCTCTTTTAGTATATGACATCACAGACAATGATACTTTTCTTCGTGTCACAAAGTGGGTGAAAGAGCTTAAGCAAATGGCAAATAAAGATATTGTTATGGCCATTGCAGCAAATAAAAGTGACCTGGTTAGATCAAAACACATAGACACTAATGAAGCAGCAAGCTATGCAGAAAGTATTGGGGCAACTCTCT ] [+] EMBL AK111385 [ TCTCCTCTCTGACCACAGCACACACGCAGCACCGGGACGGGCGATCCGGAAGGTTCTGGAACCTTCTAGAGGCTCGTAGGAGCCTCCGGCGGAACCCCTCTCGCCTCGCCTCGCCTCCGATGGGCTCGAAGCCGCCGCCGCCGCCGCAGCCCAGCGTCTCCTTCAAGCTCGTCCTCCTCGGCGACGGGAGAGTAGGCAAAACATCTCTTGTGCTGCGGTATGTGAATGATGTCTTCTCAGACAAACAGGAAGCAACTGTTCAAGCTTCATATTTGACAAAGCGCCTTGTTGTTGAAGGTGTGCCTATTACGCTCTCTATCTGGGATACAGCTGGACAAGAGAAGTTCCATGCACTAGGCCCTATATACTATCGTGATGCAGACGCTGCTCTTTTAGTATATGACATCACAGACAATGATACTTTTCTTCGTGTCACAAAGTGGGTGAAAGAGCTTAAGCAAATGGCAAATAAAGATATTGTTATGGCCATTGCAGCAAATAAAAGTGACCTGGTTAGATCAAAACACATAGACACTAATGAAGCAGCAAGCTATGCAGAAAGTATTGGGGCAACTCTCTTTGTTACTTCTGCCAAAGCTGGTACTGGGATTGATGATATCTTCAGTGACATAGCCAAGAGATTATTAGAGAGAAGAAAAAACAGCTCCGATGGCTTGTCACTGGCTCATCCAAAGAAAGGCATTTTAATCGTCGACGATGAACCTGAGAAAGAACCTCCACCAAAGTGCTGCTCATAGCGAGATTCCAATGCAAATCACGTGGGCATAATGTCATAGAAACCTGCAATTGATATGTGAAGGATCAAATCCTTGCATTAACTTTGCTCATGCTCTTTTGGAGCTCAGGAGCAATGCAAGTGTATACTGGTTGATTATTTTTAGCTTGTGTAAATACTAAACTCAGTTCATGAAATTGTTGTCAAATATAGTTGTTCGATGATGACGATTCGATATGCCGAAGAAGTTCATGGCCCTTTGTATATCTGTAACTCACAGGTTGCTTATTTACTAGCTGTTGTTTTGAGGGGGTTATTTTGATCATGTGCGTCGAAATAATTGTGTCGTGTTGACTGCTGAGTGTACATGTATCGTGGTTATTCCATCTGAACCTGCAATGTAAAGCTTCCGTCCCAATTCCCAAAAAAACAAAAAAAAAAAAAAAA] [+] EMBL CK085060 [ CTCTCTGACCACAGCACACACGCAACACCGGGACGGGCGATCCGGAAGGTTCTGGAACCTTCTAGAGGCTCGTAGGAGCCTCCGGCGGAACCCCTCTCGCCTCGCCTCGCCTCCGATGGGCTCGAAGCCGCCGCCGCCGCCGCAGCCCAGCGTCTCCTTCAAGCTCGTCCTCCTCGGCGACGGGAGAGTAGGCAAAACATCTCTTGTGCTGCGGTATGTGAATGATGTCTTCTCAGACAAACAGGAAGCAACTGTTCAAGCTTCATATTTGACAAAGCGCCTTGTTGTTGAAGGTGTGCCTATTACGCTCTCTATCTGGGATACAGCTGGACAAGAGAAGTTCCATGCACTAGGCCCTATATACTATCGTGATGCAGACGCTGCTCTTTTAGTATATGACATCACAGACAATGATACTTTTCTTCGTGTCACAAAGTGGGTGAAAGAGCTTAAGCAAATGGCAAATAAAGATATTGTTATGGCCATTGCAGCAAATAAAAGTGACCTGGTTAGATCAAAACACATAGACACTAATGAAGCAGCAAGCTATGCAGAAAGTATTG ] [-] EMBL CF314179 [ AAAGAGCTTAAGCAAATGGCAAATAAAGATATTGTTATGGCCATTGCAGCAAATAAAAGTGACCTGGTTAGATCAAAACACATAGACACTAATGAAGCAGCAAGCTATGCAGAAAGTATTGGGGCAACTCTCTTTGTTACTTTTGCCAAAGCTGGTACTGGGATTGATGATATCTTCAGTGACATAGCCAAGAGATTATTAGAGAGAAGAAAAAACAGCTCCGATGGCTTGTCACTGGCTCATCCAAAGAAAGGCATTTTAATCGTCGACGATGAACCTGAGAAAGAACCTCCACCAAAGTGCTGCTCATAGCGAGATTCCAATGCAAATCACGTGGGCATAATGTCATAGAAACCTGCAATTGATATGTGAAGGATCAAATCCTTGCATTAACTTTGCTCATGCTCTTTTGGAGCTCAGGAGCAATGCAAGTGTATACTGGTTGATTATTTTTAGCTTGTGTAAATACTAAACTCAGTTCATGAAATTGTTGTCAAATATAGTTGTTCGATGAaaaaaaaaa ] consensusID : consensus_11184#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 794 fasta sequence [CGACGGGAGAGTAGGCAAAACATCTCTTGTGCTGCGGTATGTGAATGATGTCTTCTCAGACAAACAGGAAGCAACTGTGCAAGCTTCATATTTGACAAAGCGCCTTGTTGTTGAAGGATACAGCTGGACAAGAGAAGTTCCATGCACTAGGCCCTATATACTATCGTGATGCAGACGCTGCTCTTTTAGTATATGACATCACAGACAATGATACTTTTCTTCGTGTCACAAAGTGGGTGAAAGAGCTTAAGCAAATGGCAAATAAAGATATTGTTATGGCCATTGCAGCAAATAAAAGTGACCTGGTTAGATCAAAACACATAGACACTAATGAAGCAGCAAGCTATGCAGAAAGTATTGGGGCAACTCTCTTTGTTACTTCTGCCAAAGCTGGTACTGGGATTGATGATATCTTCAGTGACATAGCCAAGAGATTATTAGAGAGAAGAAAAAACAGCTCCGATGGCTTGTCACTGGCTCATCCAAAGAAAGGCATTTTAATCGCCGACGATGAACCTGAGAAAGAACCT-CCACCAAAGTGCTGCTCATAGCGAGATTCCAATGCAAATCACGTGGGCATAATGTCATAGAAACCTGCAATTGATATGTGAAGTATCAAATCCTTGCATTAACTTTGCTCATGCTCTTTTGGAGCTCAGGAGCAATGCAAGTGTATACTGGTTGATTATTTTTAGCTTGTGTAAATACTAAACTCAGTTCATGAAATTGTTGTCAAATATAGTTGTTCGATGATGACGATTCGATAAAAAAAAAAAAAAAAAAAAAATTTAACA] [+] EMBL CF328127 [CGACGGGAGAGTAGGCAAAACATCTCTTGTGCTGCGGTATGTGAATGATGTCTTCTCAGACAAACAGGAAGCAACTGTGCAAGCTTCATATTTGACAAAGCGCCTTGTTGTTGAAGGATACAGCTGGACAAGAGAAGTTCCATGCACTAGGCCCTATATACTATCGTGATGCAGACGCTGCTCTTTTAGTATATGACATCACAGACAATGATACTTTTCTTCGTGTCACAAAGTGGGTGAAAGAGCTTAAGCAAATGGCAAATAAAGATATTGTTATGGCCATTGCAGCAAATAAAAGTGACCTGGTTAGATCAAAACACATAGACACTAATGAAGCAGCAAGCTATGCAGAAAGTATTGGGGCAACTCTCTTTGTTACTTCTGCCAAAGCTGGTACTGGGATTGATGATATCTTCAGTGACATAGCCAAGAGATTATTAGAGAGAAGAAAAAACAGCTCCGATGGCTTGTCACTGGCTCATCCAAAGAAAGGCATTTTAATCGCCGACGATGAACCTGAGAAAGAACCT CCACCAAAGTGCTGCTCATAGCGAGATTCCAATGCAAATCACGTGGGC ] [-] EMBL CF329230 [ ATGGCAAATAAAGATATTGTTATGGCCATTGCAGCAAATAAAAGTGACCTGGTTAGATCAAAACACATAGACCCTAATGAAGCAGCAAGCTATGCAGAAAGTATTGGGGCAACTCTCTTTGTTACTTTTGCCAAAGCTGGTACTGGGATTGATGATATCTTCAGTGACATAGCCAAGAGATTATTAGAGAGAAGAAAAAACAGCTCCGATGGCTTGTCACTGGCTCATCCAAAGAAAGGCATTTTAATCGTCGACGATGAACCTGAGAAAGAACCTCCCCCCAAAGTGCTGCTTATAGCGAGATTCCAATGCAAATCACGTGGGCATAATGTCATAGAAACCTGCAATTGATATGTGAAGTATCAAATCCTTGCATTAACTTTGCTCATGCTCTTTTGGAGCTCAGGAGCAATGCAAGTGTATACTGGTTGATTATTTTTAGCTTGTGTAAATACTAAACTCAGTTCATGAAATTGTTGTCAAATATAGTTGTTCGATGATGACGATTCGATAAAAAAAAAAAAAAAAAAA ] [-] EMBL CF328128 [ GGCTTGTCATTGGTTCATCCAAAGAAAGGCATTTTAATCGCCGACGATAAACCTGAGAAAGAACCT CCACCAAAGTTCTGCTCATAGCGAGATTCCAATGCAAATCACGTGGGCATAATGTCATAGAAACCTGCAATTTATATGTGAAGGATCAAATCCTTGCATTAACTTTGCTCATGCTCTTTTGGAGCTCAGGAGCAATGCAAGTGTATACTGGTTGATTATTTTTAGCTTGTGTAAATAATTAACCCAGTTCATGAAATTGTTGTCAAATATAGTTGTTCGAAGATGACGATTCGATAAAAAAAAAAAAAAAAAAAAAATTTAACA] consensusID : consensus_11184#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 393 fasta sequence [CTGCCAAAGCTGGCACTGGGNTTGATGATATCTTCAGTGACATAGCCAAGAGTAAGTCTTATTGTGTTAGCTATTGCTTTCAATTCATCTCCACATTTTTGCCACTTTAACAAATACTGCTTTGCCAAAACTTATAAGTTGTAACATTCAGCTATTCCATTAGAATGCGGGGTCATCAACGNTAGCATATAGTTTAGTTAACAATTTCATGNTTCACTCTATTGAGCAGATTTCCGTCATCAAACTCAATTGTTATTCCTCAGATTAATCCATTGTATAACACCTCAATATTTGCGNTTCCCCCTCTTCATCCTCAAATAACAAGGGTGGGGGATGGGCCCCCCATGTCAAATTGGGATTAGGAATTGCTGNAATTTCGGAGGTGGGCTAATG] [+] EMBL D43204 [CTGCCAAAGCTGGCACTGGGNTTGATGATATCTTCAGTGACATAGCCAAGAGTAAGTCTTATTGTGTTAGCTATTGCTTTCAATTCATCTCCACATTTTTGCCACTTTAACAAATACTGCTTTGCCAAAACTTATAAGTTGTAACATTCAGCTATTCCATTAGAATGCGGGGTCATCAACGNTAGCATATAGTTTAGTTAACAATTTCATGNTTCACTCTATTGAGCAGATTTCCGTCATCAAACTCAATTGTTATTCCTCAGATTAATCCATTGTATAACACCTCAATATTTGCGNTTCCCCCTCTTCATCCTCAAATAACAAGGGTGGGGGATGGGCCCCCCATGTCAAATTGGGATTAGGAATTGCTGNAATTTCGGAGGTGGGCTAATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11184#0 ACTTCTCCTCTCTGACCACAGCACACACGCAACACCGGGACGGGCGATCCGGAAGGTTCT 60 consensus_11184#1 ------------------------------------------------------------ consensus_11184#2 ------------------------------------------------------------ consensus_11184#0 GGAACCTTCTAGAGGCTCGTAGGAGCCTCCGGCGGAACCCCTCTCGCCTCGCCTCGCCTC 120 consensus_11184#1 ------------------------------------------------------------ consensus_11184#2 ------------------------------------------------------------ consensus_11184#0 CGATGGGCTCGAAGCCGCCGCCGCCGCCGCAGCCCAGCGTCTCCTTCAAGCTCGTCCTCC 180 consensus_11184#1 ------------------------------------------------------------ consensus_11184#2 ------------------------------------------------------------ consensus_11184#0 TCGGCGACGGGAGAGTAGGCAAAACATCTCTTGTGCTGCGGTATGTGAATGATGTCTTCT 240 consensus_11184#1 ----CGACGGGAGAGTAGGCAAAACATCTCTTGTGCTGCGGTATGTGAATGATGTCTTCT 56 consensus_11184#2 ------------------------------------------------------------ consensus_11184#0 CAGACAAACAGGAAGCAACTGTTCAAGCTTCATATTTGACAAAGCGCCTTGTTGTTGAAG 300 consensus_11184#1 CAGACAAACAGGAAGCAACTGTGCAAGCTTCATATTTGACAAAGCGCCTTGTTGTTGAAG 116 consensus_11184#2 ------------------------------------------------------------ consensus_11184#0 GTGTGCCTATTACGCTCTCTATCTGGGATACAGCTGGACAAGAGAAGTTCCATGCACTAG 360 consensus_11184#1 G--------------------------ATACAGCTGGACAAGAGAAGTTCCATGCACTAG 150 consensus_11184#2 ------------------------------------------------------------ consensus_11184#0 GCCCTATATACTATCGTGATGCAGACGCTGCTCTTTTAGTATATGACATCACAGACAATG 420 consensus_11184#1 GCCCTATATACTATCGTGATGCAGACGCTGCTCTTTTAGTATATGACATCACAGACAATG 210 consensus_11184#2 ------------------------------------------------------------ consensus_11184#0 ATACTTTTCTTCGTGTCACAAAGTGGGTGAAAGAGCTTAAGCAAATGGCAAATAAAGATA 480 consensus_11184#1 ATACTTTTCTTCGTGTCACAAAGTGGGTGAAAGAGCTTAAGCAAATGGCAAATAAAGATA 270 consensus_11184#2 ------------------------------------------------------------ consensus_11184#0 TTGTTATGGCCATTGCAGCAAATAAAAGTGACCTGGTTAGATCAAAACACATAGACACTA 540 consensus_11184#1 TTGTTATGGCCATTGCAGCAAATAAAAGTGACCTGGTTAGATCAAAACACATAGACACTA 330 consensus_11184#2 ------------------------------------------------------------ consensus_11184#0 ATGAAGCAGCAAGCTATGCAGAAAGTATTGGGGCAACTCTCTTTGTTACTTCTGCCAAAG 600 consensus_11184#1 ATGAAGCAGCAAGCTATGCAGAAAGTATTGGGGCAACTCTCTTTGTTACTTCTGCCAAAG 390 consensus_11184#2 ---------------------------------------------------CTGCCAAAG 9 ********* consensus_11184#0 CTGGTACTGGGATTGATGATATCTTCAGTGACATAGCCAAGAGATTATTAGAGAGAAGAA 660 consensus_11184#1 CTGGTACTGGGATTGATGATATCTTCAGTGACATAGCCAAGAGATTATTAGAGAGAAGAA 450 consensus_11184#2 CTGGCACTGGGNTTGATGATATCTTCAGTGACATAGCCAAGAGTAAGTCTTATTGTGTTA 69 **** ****** ******************************* * * * * consensus_11184#0 AAAACAGCTCCGATGGCTTGTCACTGGCTCATCCAAAGAAAGGCATTTTAATCGTCGACG 720 consensus_11184#1 AAAACAGCTCCGATGGCTTGTCACTGGCTCATCCAAAGAAAGGCATTTTAATCGCCGACG 510 consensus_11184#2 GCTATTGCTTTCAATTCATCTCCACATTTTTGCCACTTTAACAAATACTG--CTTTGCCA 127 * *** * * * ** * *** ** ** * * * * consensus_11184#0 ATGAACCTGAGAAAGAACCTCCACCAAAGTGCTGCTCATAGCGAGATTCCAATGCAAATC 780 consensus_11184#1 ATGAACCTGAGAAAGAACCTCCACCAAAGTGCTGCTCATAGCGAGATTCCAATGCAAATC 570 consensus_11184#2 AAACTTATAAGTTGTAACATTCAGCTATTCCATTAGAATGCGGGGTCATCAACGNTAGC- 186 * * ** *** * ** * * * ** * * *** * * consensus_11184#0 ACGTGGGCATAATGTCATAGAAACCTGCAATTGATATGTGAAGGATCAAATCCTTG-CAT 839 consensus_11184#1 ACGTGGGCATAATGTCATAGAAACCTGCAATTGATATGTGAAGTATCAAATCCTTG-CAT 629 consensus_11184#2 ------ATATAGTTTAGTTAACAATTTCATGNTTCACTCTATTGAGCAGATTTCCGTCAT 240 *** * * * * * * ** * * * ** ** * *** consensus_11184#0 TAACTTTGCTCATGCTCTTTTGGAGC--TCAGGAGCAATGCAAGTGTATACTGGTTGATT 897 consensus_11184#1 TAACTTTGCTCATGCTCTTTTGGAGC--TCAGGAGCAATGCAAGTGTATACTGGTTGATT 687 consensus_11184#2 CAAACTCAATTGTTATTCCTCAGATTAATCCATTGTATAACACCTCAATATTTGCGNTTC 300 ** * * * * * ** ** * * ** * *** * * * consensus_11184#0 ATTTTTAGCTTGTGTAAATACTAAACTCAGTTCATGAAATTGT--TGTCAAATATAGTTG 955 consensus_11184#1 ATTTTTAGCTTGTGTAAATACTAAACTCAGTTCATGAAATTGT--TGTCAAATATAGTTG 745 consensus_11184#2 CCCCTCTTCATCCTCAAATAACAAGGGTGGGGGATGGGCCCCCCATGTCAAATTGGGATT 360 * * * ***** ** * *** ******** * * consensus_11184#0 TTCGATGATGACGATTCGATATGCCGAAGAAGTTCATGGCCCTTTGTATATCTGTAACTC 1015 consensus_11184#1 TTCGATGATGACGATTCGATAAAAAAAAAAAAAAAAAAAAAATTTA-ACA---------- 794 consensus_11184#2 AGGAATTGCTGNAATTTCGGAGGTGGGCTAATG--------------------------- 393 ** *** * ** consensus_11184#0 ACAGGTTGCTTATTTACTAGCTGTTGTTTTGAGGGGGTTATTTTGATCATGTGCGTCGAA 1075 consensus_11184#1 ------------------------------------------------------------ consensus_11184#2 ------------------------------------------------------------ consensus_11184#0 ATAATTGTGTCGTGTTGACTGCTGAGTGTACATGTATCGTGGTTATTCCATCTGAACCTG 1135 consensus_11184#1 ------------------------------------------------------------ consensus_11184#2 ------------------------------------------------------------ consensus_11184#0 CAATGTAAAGCTTCCGTCCCAATTCCCAAAAAAACAAAAAAAAAAAAAAAA 1186 consensus_11184#1 --------------------------------------------------- consensus_11184#2 --------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||