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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11185#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1340 fasta sequence
[TCTAGGGCACTGGGCGCTCACGGCCGAGAAGCTGCTCGAATCCCCTCCAAATTCCAGGTGAGAGCCACTGATCCGTCCCAAAGCCTTCAAATTACTCAAATCCAACCACGAAACCCTAGATTTCTCCCGCTAATTTGCTCATCCGACCAGCCAAACTGTCGCCTCGCGATCAGCATGTACCCCAATCCCCGCATAGGCTGCGTGCTGGGTAGATCTCTTGCCGTGGAAGTATTGATCCTGTCTTGTTCCTGACCAACTGAGGATTGGAGCTTTGTGATTCTGTGATCTTCTTGTGGAGATATGGGCAAGCCTCTGATCTATGAGATATTGGAGAAACCAGCCAGTAGTAGCGTGATAGGCATCTGCTCCCTGATCTGGTTCTTCATCCAGAAGAGGAACATTGGGTATGGAGATGTTGGGCTGAGCTACGAGGCCGCCATGGAAGGC-GGGCAGTACTGGAGGATCATCACCTCCGCCTTCTCGCACATCAGCGTGGTGCATTTGGTGTTCAACATGAGTGCATTGTGGAGCCTTGGTGTTGTCGAGCAGTTGGGGCAGATTGGGCTCGGTGTTGAGTACTACCTCCATTACACGCTTGTGCTCGTGGTGCTGTCTGGATTGCTTGTTCTTGGGTTCTACCATGTGATGATTCAGAAGTTCAAGGTGGAGTATTTCAGGAGGGTGACCGCTGTCGGGTACTCGTGCGTCGTGTTTGGGTGGATGACAATTCTGGCTACAAAGCAACCGTCGTCGAAGCTGAATATCTTCGGGGTTCTTTCGCTGCCTATCAGCTTCGCGCCGTTTGAATCGCTGATATTCACATCTATCATGGTTCCTCAGGCGAGTTTCATTGGCCACTTATCAGGGATCATTGTTGGCTACTCAATTGCCTGGGGTTTGGTTCATGGAATGAATAACTATTGGGCTATCACCATGTTTGGTTGGATTGTGCTTGTGTTTGTCTTGAGCTTGAAGCGTACAGGCTCGATGGATTTGAGATTTATTGAGATTGAGCCAGTTACGGATCCCTCGCTGCCTTCTGTTGGCGTAGTTGCCTCAAGAAATGGCAGGACTCTTCAGATGGATGTGCTTCCGAGAAGAGGAGTTGCAGACATTGTATGACTTGCAAAGTGGGATGCTCAATCGCTGAAATGTTTTATAGATAGTCCTAAACTTCTCTGAAAATTTTCAGACATTGTATTACTTGCAGAGTGGAATACTCGGCCGCTGAAATGTTCGATAGATAGTATTGTTCAAGCCCTGAATTGTATCATGCTGATTCAATACTATACTTCCAGTTTTGAAAAAAAAAAAAAAAAAACACTGTCATGCCGTGACGT]
[+] EMBL CF327974 [TCTAGGGCACTGGGCGCTCACGGCCGAGAAGCTGCTCGAATCCCCTCCAAATTCCAGGTGAGAGCCACTGATCCGTCCCAAAGCCTTCAAATTACTCAAATCCAACCACGAAACCCTAGATTTCTCCCGCTAATTTGCTCATCCGACCAGCCAAACTGTCGCCTCGCGATCAGCATGTACCCCAATCCCCGCATAGGCTGCGTGCTGGGTAGATCTCTTGCCGTGGAATTATTGATCCTGTCTTGTTCCTGACCAACTGAGGATTGGAGCTTTGTGATTCTGTGATCTTCTTGTGGAGATATGGGCAAGCCTCTGATCTATGAGATATTGGAGAAACCAGCCAGTAGTAGCGTGATAGGCATCTGCTCCCTGATCTGGTTCTTCATCCAGAAGAGGAACATTGGGTTGGGAGATGTTGGGCTGAGCTACGAGGCCGCCATGGAAGGC GGGCAGTACTGGAGGATCATCACCTCCGCCTTCTCGCACATCAGCGTGGTGCATTTGGTGTTCAACAT ]
[+] EMBL CB680330 [ TCAAATCACTCAAATCCAACCACGAAACCCTAGATTTCTCCCGCTAATTTGCTCATCCGACCAGCCAAACTGTCGCCTCGCGATCAGCATGTACCCCAATCCCCGCATAGGCTGCGTGCTGGGTAGATCTCTTGCCGTGGAAGTATTGATCCTGTCTTGTTCCTGACCAACTGAGGATTGGAGCTTTGTGATTCTGTGATCTTCTTGTGGAGATATGGGCAAGCCTCTGATCTATGAGATATTGGAGAAACCAGCCAGTAGTAGCGTGATAGGCATCTGCTCCCTGATCTGGTTCTTCATCCAGAAGAGGAACATTGGGTATGGAGATGTTGGGCTGAGCTACGAGGCCGCCATGGAAGGC GGGCAGTACTGGAGGATCATCACCTCCGCCTTCTCGCACATCAGCGTGGTGCATTTGGTGTTCAACATGAGTGCATTGTGGAGCCTTGGTGTTGTCGAGCAGTTGGGGCAGATTGGGCTCGGTGTTGAGTACTACCTCCATTACACGCTTGTGCTCGTGGTGCTGTCTGGATTGCTTGTTCTTGGGTTCTACCATGTGATGATTCAGAAGTTCAAGGTGGAGTATTTCAGGAGGGTGACCGCTGTCGGGTACTCGTGCGTCGTGTTTGGGTGGATGACAATTCTGGCTACAAAGCAACCGTCGTCGAAGCTGAATATCTTCGGGGTTCTTTCGCTGCCTATCAGCTTCGCGCCGTTTGAATCGCTGATATTCA ]
[+] EMBL AK063649 [ CCGCTAATTTGCTCATCCGACCAGCCAAACTGTCGCCTCGCGATCAGCATGTACCCCAATCCCCGCATAGGCTGCGTGCTGGGTAGATCTCTTGCCGTGGAAGTATTGATCCTGTCTTGTTCCTGACCAACTGAGGATTGGAGCTTTGTGATTCTGTGATCTTCTTGTGGAGATATGGGCAAGCCTCTGATCTATGAGATATTGGAGAAACCAGCCAGTAGTAGCGTGATAGGCATCTGCTCCCTGATCTGGTTCTTCATCCAGAAGAGGAACATTGGGTATGGAGATGTTGGGCTGAGCTACGAGGCCGCCATGGAAGGC GGGCAGTACTGGAGGATCATCACCTCCGCCTTCTCGCACATCAGCGTGGTGCATTTGGTGTTCAACATGAGTGCATTGTGGAGCCTTGGTGTTGTCGAGCAGTTGGGGCAGATTGGGCTCGGTGTTGAGTACTACCTCCATTACACGCTTGTGCTCGTGGTGCTGTCTGGATTGCTTGTTCTTGGGTTCTACCATGTGATGATTCAGAAGTTCAAGGTGGAGTATTTCAGGAGGGTGACCGCTGTCGGGTACTCGTGCGTCGTGTTTGGGTGGATGACAATTCTGGCTACAAAGCAACCGTCGTCGAAGCTGAATATCTTCGGGGTTCTTTCGCTGCCTATCAGCTTCGCGCCGTTTGAATCGCTGATATTCACATCTATCATGGTTCCTCAGGCGAGTTTCATTGGCCACTTATCAGGGATCATTGTTGGCTACTCAATTGCCTGGGGTTTGGTTCATGGAATGAATAACTATTGGGCTATCACCATGTTTGGTTGGATTGTGCTTGTGTTTGTCTTGAGCTTGAAGCGTACAGGCTCGATGGATTTGAGATTTATTGAGATTGAGCCAGTTACGGATCCCTCGCTGCCTTCTGTTGGCGTAGTTGCCTCAAGAAATGGCAGGACTCTTCAGATGGATGTGCTTCCGAGAAGAGGAGTTGCAGACATTGTATGACTTGCAAAGTGGGATGCTCAATCGCTGAAATGTTTTATAGATAGTCCTAAACTTCTCTGAAAATTTTCAGACATTGTATTACTTGCAGAGTGGAATACTCGGCCGCTGAAATGTTCGATAGATAGTATTGTTCAAGCCCTGAATTGTATCATGCTGATTCAATACTATACT ]
[+] EMBL C28699 [ AAACTGTCGCCTCGCGATCAGCATGTACCCCAATCCCCGCATAGGCTGCGTGCTGGGTAGATCTCTTGCCGTGGAAGTATTGATCCTGTCTTGTTCCTGACCAACTGAGGATTGGAGCTTTGTGATTCTGTGATCTTCTTGTGGAGATATGGGCAAGCCTCTGATCTATGAGATATTGGAGAAACCAGCCAGTAGTAGCGTGATAGGCATCTGCTCCCTGATCTGGTTCTTCATCCAGAAGAGGAACATTGGGTATGGAGATGTTGGGCTGAGCTACGAGGCCGCCATGGAAGGCGGGGCAGTACTGGAGGATCATCACCTNCGGCTTCTCGCACATCAGCGTGGTGCATTTGGTGTTCAACATGAGTNCATTGTGGAGCCTTGGTGTTNTCGAGCAGTTGGGGCAGATTNGGCTCGGTGTTGAGTACTACCT CATTACA ]
[-] EMBL CF295340 [ ATCAGCTTCGCGCCGTTTGAATCGCTGATATTCACATCTATCATGGTTCCTCAGGCGAGTTTCATTGGCCACTTATCAGGGATCATTGTTGGCTACTCAATTGCCTGGGGTTTGGTTCATGGAATGAATAACTATTGGGCTATCACCATGTTTGGTTGGATTGTGCTTGTGTTTGTCTTGAGCTTGAAGCGTACAGGCTCGATGGATTTGAGATTTATTGAGATTGAGCCAGTTACGGATCCCTCGCTGCCTTCTGTTGGCGTAGTTGCCTCAAGAAATGGCAGGACTCTTCAGATGGATGTGCTTCCGAGAAGAGGAGTTGCAGACATTGTATGACTTGCAAAGTGGAAAAATCAATCGCTGAAATGTTTTATA ATAGTCCTAAACTTCTCTGAAAATTTTCAGACATTGTATTACTTAAAAAGTGGAATACTCGGCCGCTGAAATGTTCGATAGATAGTATTGTTCAAGCCCTGAATTGTATCATGCTGATTCAATAAAAAACTTCCAGTTTTGAAAAAAAAAAAAAAAAAACACTGTCATGCCGTGACGT]
[-] EMBL CF279844 [ TTTGGTTCATGGAATGAATAACTATTGGGCTATCACCATGTTTGGTTGGATTGTGCTTGTGTTTGTCTTGAGCTTGAAGCGTACAGGCTCGATGGATTTGAGATTTATTGAGATTGAGCCAGTTACGGATCCCTCGCTGCCTTCTGTTGGGGTAGTTGCCTCAAGAAATGGCAGGACTCTTCAGATGGATGTGCTTCCGAGAAGAGGAGTTGCAGACATTGTATGACTTGCAAAGTGGGATGCTCAATCGCTGAAATGTTTTATAGATAGTCCTAAACTTCTTTGAAAATTTTCAGACATTGTATTACTTGCAGAGTGGAATACTCGGCCGCTGAAATGTTCGATAGATAGTATTGTTCAAGCCCTGAATTGTATCATGCTGATTCAATACTATACTTCCAGTTTTGAAAAAAAAAAA ]
consensusID : consensus_11185#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 546 fasta sequence
[AACATCATCTCCCCGTGCAGCGAAACCCCCCAAAAAAAATTCCCAACTCGAACAGTCTAGGGCACTGGGCGCTCACGGCCGAGAAGCTGCTCGAATCCCCTCCAAAATTCCAAGCCAAACTGTCGCCTCGCGATCAGCATGTACCCCAATCCCCGCATAGGCTGCGTGCTGGGTAGATCTCTTGCCGTGGAAGTATTGATCCTGTCTTGTTCCTGACCAACTGAGGATTGGAGCTTTGTGATTCTGTGATCTTCTTGTGGAGATATGGGCAAGCCTCTGATCTATGAGATATTGGAGAAACCAGCCAGTAGTAGCGTGATAGGCATCTGCTCCCTGATCTGGTTCTTCATCCAGAAGAGGAACATTGGGTATGGAGATGTTGGGCTGAGCTACGAGGCCGCCATGGAAGGCGGGCAGTACTGGAGGATCATCACCTCCGCCTTCTCGCACATCAGCGTGGTGCATTTGGTGTTCAACATGAGTGCATTGTGGAGCCTTGGTGTTGTCGAGCAGTTGGGGCAGATTGGGCTCGGTGTTGAGTACTAC]
[+] EMBL CF295339 [AACATCATCTCCCCGTGCAGCGAAACCCCCCAAAAAAAATTCCCAACTCGAACAGTCTAGGGCACTGGGCGCTCACGGCCGAGAAGCTGCTCGAATCCCCTCCAAAATTCCAAGCCAAACTGTCGCCTCGCGATCAGCATGTACCCCAATCCCCGCATAGGCTGCGTGCTGGGTAGATCTCTTGCCGTGGAAGTATTGATCCTGTCTTGTTCCTGACCAACTGAGGATTGGAGCTTTGTGATTCTGTGATCTTCTTGTGGAGATATGGGCAAGCCTCTGATCTATGAGATATTGGAGAAACCAGCCAGTAGTAGCGTGATAGGCATCTGCTCCCTGATCTGGTTCTTCATCCAGAAGAGGAACATTGGGTATGGAGATGTTGGGCTGAGCTACGAGGCCGCCATGGAAGGCGGGCAGTACTGGAGGATCATCACCTCCGCCTTCTCGCACATCAGCGTGGTGCATTTGGTGTTCAACATGAGTGCATTGTGGAGCCTTGGTGTTGTCGAGCAGTTGGGGCAGATTGGGCTCGGTGTTGAGTACTAC]
[+] EMBL CF279845 [ TTGTGGAGATATGGGCAAGCCTCTGATCTATGAGATATTGGAGAAACCAGCCAGTAGTAGCGTGATAGGCATCTGCTCCCTGATCTGGTTCTTCATCCAGAAGAGGAACATTGGGTATGGAGATGTTGGGCTGAGCTACGAGGCCGCCATGGAAGGCGGGCAGTACTGGAGGATCATCACCTCCGCCTTCTCGCACATCAGCGTGG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11185#0 TCTAGGGCACTGGGCGCTCACGGCCGAGAAGCTGCTCGAATCCCCTCCAAATTCCAGGTG 60
consensus_11185#1 -----AACATCATCTCCCCGTG-CAGCGAAACCCCCCAAAAA------AAATTCC----- 43
** * * * * * *** * * * ** *******
consensus_11185#0 AGAGCCACTGATCCGTCCCAAAGCCTTCAAATTACTCAAATCCAACCACGAAACC-CTAG 119
consensus_11185#1 ----CAACTCGAACAGTCTAGGGCACTGGG--CGCTCA----CGGCCGAGAAGCTGCTCG 93
* *** * * * ** * **** * ** *** * ** *
consensus_11185#0 ATTTCTCCCGCTAATTTGCTCATCCGACCAGCCAAACTGTCGCCTCGCGATCAGCATGTA 179
consensus_11185#1 AATCCCCTCCAAAATTC----------CAAGCCAAACTGTCGCCTCGCGATCAGCATGTA 143
* * * * * **** * *******************************
consensus_11185#0 CCCCAATCCCCGCATAGGCTGCGTGCTGGGTAGATCTCTTGCCGTGGAAGTATTGATCCT 239
consensus_11185#1 CCCCAATCCCCGCATAGGCTGCGTGCTGGGTAGATCTCTTGCCGTGGAAGTATTGATCCT 203
************************************************************
consensus_11185#0 GTCTTGTTCCTGACCAACTGAGGATTGGAGCTTTGTGATTCTGTGATCTTCTTGTGGAGA 299
consensus_11185#1 GTCTTGTTCCTGACCAACTGAGGATTGGAGCTTTGTGATTCTGTGATCTTCTTGTGGAGA 263
************************************************************
consensus_11185#0 TATGGGCAAGCCTCTGATCTATGAGATATTGGAGAAACCAGCCAGTAGTAGCGTGATAGG 359
consensus_11185#1 TATGGGCAAGCCTCTGATCTATGAGATATTGGAGAAACCAGCCAGTAGTAGCGTGATAGG 323
************************************************************
consensus_11185#0 CATCTGCTCCCTGATCTGGTTCTTCATCCAGAAGAGGAACATTGGGTATGGAGATGTTGG 419
consensus_11185#1 CATCTGCTCCCTGATCTGGTTCTTCATCCAGAAGAGGAACATTGGGTATGGAGATGTTGG 383
************************************************************
consensus_11185#0 GCTGAGCTACGAGGCCGCCATGGAAGGCGGGCAGTACTGGAGGATCATCACCTCCGCCTT 479
consensus_11185#1 GCTGAGCTACGAGGCCGCCATGGAAGGCGGGCAGTACTGGAGGATCATCACCTCCGCCTT 443
************************************************************
consensus_11185#0 CTCGCACATCAGCGTGGTGCATTTGGTGTTCAACATGAGTGCATTGTGGAGCCTTGGTGT 539
consensus_11185#1 CTCGCACATCAGCGTGGTGCATTTGGTGTTCAACATGAGTGCATTGTGGAGCCTTGGTGT 503
************************************************************
consensus_11185#0 TGTCGAGCAGTTGGGGCAGATTGGGCTCGGTGTTGAGTACTACCTCCATTACACGCTTGT 599
consensus_11185#1 TGTCGAGCAGTTGGGGCAGATTGGGCTCGGTGTTGAGTACTAC----------------- 546
*******************************************
consensus_11185#0 GCTCGTGGTGCTGTCTGGATTGCTTGTTCTTGGGTTCTACCATGTGATGATTCAGAAGTT 659
consensus_11185#1 ------------------------------------------------------------
consensus_11185#0 CAAGGTGGAGTATTTCAGGAGGGTGACCGCTGTCGGGTACTCGTGCGTCGTGTTTGGGTG 719
consensus_11185#1 ------------------------------------------------------------
consensus_11185#0 GATGACAATTCTGGCTACAAAGCAACCGTCGTCGAAGCTGAATATCTTCGGGGTTCTTTC 779
consensus_11185#1 ------------------------------------------------------------
consensus_11185#0 GCTGCCTATCAGCTTCGCGCCGTTTGAATCGCTGATATTCACATCTATCATGGTTCCTCA 839
consensus_11185#1 ------------------------------------------------------------
consensus_11185#0 GGCGAGTTTCATTGGCCACTTATCAGGGATCATTGTTGGCTACTCAATTGCCTGGGGTTT 899
consensus_11185#1 ------------------------------------------------------------
consensus_11185#0 GGTTCATGGAATGAATAACTATTGGGCTATCACCATGTTTGGTTGGATTGTGCTTGTGTT 959
consensus_11185#1 ------------------------------------------------------------
consensus_11185#0 TGTCTTGAGCTTGAAGCGTACAGGCTCGATGGATTTGAGATTTATTGAGATTGAGCCAGT 1019
consensus_11185#1 ------------------------------------------------------------
consensus_11185#0 TACGGATCCCTCGCTGCCTTCTGTTGGCGTAGTTGCCTCAAGAAATGGCAGGACTCTTCA 1079
consensus_11185#1 ------------------------------------------------------------
consensus_11185#0 GATGGATGTGCTTCCGAGAAGAGGAGTTGCAGACATTGTATGACTTGCAAAGTGGGATGC 1139
consensus_11185#1 ------------------------------------------------------------
consensus_11185#0 TCAATCGCTGAAATGTTTTATAGATAGTCCTAAACTTCTCTGAAAATTTTCAGACATTGT 1199
consensus_11185#1 ------------------------------------------------------------
consensus_11185#0 ATTACTTGCAGAGTGGAATACTCGGCCGCTGAAATGTTCGATAGATAGTATTGTTCAAGC 1259
consensus_11185#1 ------------------------------------------------------------
consensus_11185#0 CCTGAATTGTATCATGCTGATTCAATACTATACTTCCAGTTTTGAAAAAAAAAAAAAAAA 1319
consensus_11185#1 ------------------------------------------------------------
consensus_11185#0 AACACTGTCATGCCGTGACGT 1340
consensus_11185#1 ---------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||