|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11187#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1036 fasta sequence
[AAGCACATCCGCCTCAAACACGACAAACCCCCCCTACCCTGTTCATCTTCGAGAGATTCCTCCCAATCCCGAGCAGAATCCCCCGCCCCGGCGAATCCGCGCGGCGCTCGAGTGAATTTGACTAGCTAGTAGCCACGCATGAAGCCAGATGGTGAAACTCAGCTTCGTCCTACAGCTGCTGGACATCCAGATCCTGGTTTGGGCACATCATCTGCAGAATACGTGGCCTCTCTAGGACCAGCTACAGCTCCAGTATCTTATCCATATATCAGTACCTATTATGGAGGCACTTATGGTGCTTATAGTGGACAACCTCTGGTTAACGCTGCTTTAATGGCAATGCCTCCGCATTCTGTGCCCTTGGTGACCGATGCTGTTGTAGAGCCCATATATGTCAATGCAAGGCAGTATCATGGTATATTAAGGCGGCGCCAATCTCGTGCAAAAGCTGAATCAGAAAATAAGGCTAACAAAATCCGCAAGCCTTACCTACATGAGTCCCGCCATCTGCATGCTTTGAAAAGGGCAAGGGGGT-CCGGTGGTCGATTTCTCAACTCTAAGGCTGTGGAGGGGAAGCAAGACACTAAATCTGTAGATAAAAAGGAT-GGAGCTGTGCCATCT---GAGAAGAGAGACAACAAGTTGGCAAATA-CATTATCAAATTGGAGAACTCGAGCCCAACAACACAACCAGGTGCAGATGCGTCCGATGTTGTATGATGCAAATTTAGCCAATCCCTCCCTAATCCAACCAAATTGCCAGAATCGATCGAATTGTGTGCTTGCTTTCTGTTCG-TGACAGTTTAAGTCTGTACATAGCTGTTAGTTTTGATGATTGGATAAATCCATGATAGTATAGTGAACATGTTGTGGGAGCAGTTCAGTGCTAGGGTTTGTTGCTGAGTGTAGATTATGAACCTTGTGTCACTGTTGTGTTTTGCTTCTGTTAATGAATGGTAGCTTACAATGGGAACTTTTGTGAATTTCAGGTTGAACAATAGTTCCTTGGAAATACCATGAGAATAACTTGTTTAAAAAAA]
[+] EMBL CF320157 [AAGCACATCCGCCTCAAACACGACAAACCCCCCCTACCCTGTTCATCTTCGAGAGATTCCTCCCAATCCCGAGCAGAATCCCCCGCCCCGGCGAATCCGCGCGGCGCTCGAGTGAATTTGACTAGCTAGTAGCCACGCATGAAGCCAGATGGTGAAACTCAGCTTCGTCCTACAGCTGCTGGACATCCAGATCCTGGTTTGGGCACATCATCTGCAGAATACGTGGCCTCTCTAGGACCAGCTACAGCTCCAGTATCTTATCCATATATCAGTACCTATTATGGAGGCACTTATGGTGCTTATAGTGGACAACCTCTGGTTAACGCTGCTTTAATGGCAATGCCTCCGCATTCTGTGCCCTTGGTGACCGATGCTGTTGTAGAGCCCATATATGTCAATGCAAGGCAGTATCATGGTATATTAAGGCGGCGCCAATCTCGTGCAAAAGCTGAATCAGAAAATAAGGCTAACAAAATCCGCAAGCCTTACCTACATGAGTCCCGCCATCTG ]
[+] EMBL CF327661 [ CATCTTCGAGAGATTCCTCCCAATCCCGAGCAGAATCCCCCGCCCCGGCGAATCCGTGCGGCGCTCGAGTGAATTTGACTAGCTAGTAGCCACGCATGAAGCCAGATGGTGAAACTCAGCTTCATCCTACAGCTGCTGGACATCCAGATCCTGGTTTGGGCACATCATCTGCGGAATACGTGGCCCCTGTAGGACCAGCTACAGCTCCAGTAGCTTATCCATATATTGGTACCTATTATGGAGGCATTTATGGTGCTTATAGTGGACAACCTCTGGTTAACGCTGCTTTAATGGCAATGCCTCCGCATTCTGTGCCCTTGGTGACCGATGCTGTTGTAGAGCCCATATATGTCAATGCAAGGCAGTATCATGGTATATTAAGGCGGCTCCAATCTCGTGCAAAAGCTGAATCAGAAAATAAGGCTAACAAAATCCGCAAGCCTTACCTACATGAGTCCCGCCATCTGCATGCTTTGAAAAGGGCAAGGGGGTCCCGGTGGTCGATTTCTCAACTCTAAGGCCGTGGAGGGGAAGCAAGACACTAAATCTGTAGATAAAAAGGATGGGAGCTGTGCCATCT GAGAAGAGAGACAACAAGTTGGCAAATA CATTATCAAATTGGAGAACTCGAGCCCAACAACACAACCAG ]
[+] EMBL CF278749 [ GAGATTCCTCCCAATCCCGAGCAGAATCCCCCGCCCCGGCGAATCCGCGCGGCGCTCGAGTGAATTTGACTAGCTAGTAGCCACGCATGAAGCCAGATGGTGAAACTCAGCTTCGTCCTACAGCTGCTGGACATCCAGATCCTGGTTTGGGCACATCATCTGCAGAATACGTGGCCTCTCTAGGACCAGCTACAGCTCCAGTATCTTATCCATATATCAGTACCTATTATGGAGGCACTTATGGTGCTTATAGTGGACAACCTCTGGTTAACGCTGCTTTAATGGCAATGCCTCCGCATTCTGTGCCCTTGGTGACCGATGCTGTTGTAGAGCCCATATATGTCAATGCAAGGCAGTATCATGGTATATTAAGGCGGCGCCAATCTCGTGCAAAAGCTGAATCAGAAAATAAGGCCAACAAAATCCGCAAGCCTTACCTACATGAGTCCCGCCATCTGCATG ]
[+] EMBL AK059903 [ AGATTCCTCCCAATCCCGAGCAGAATCCCCCGCCCCGGCGAATCCGCGCGGCGCTCGAGTGAATTTGACTAGCTAGTAGCCACGCATGAAGCCAGATGGTGAAACTCAGCTTCGTCCTACAGCTGCTGGACATCCAGATCCTGGTTTGGGCACATCATCTGCAGAATACGTGGCCTCTCTAGGACCAGCTACAGCTCCAGTATCTTATCCATATATCAGTACCTATTATGGAGGCACTTATGGTGCTTATAGTGGACAACCTCTGGTTAACGCTGCTTTAATGGCAATGCCTCCGCATTCTGTGCCCTTGGTGACCGATGCTGTTGTAGAGCCCATATATGTCAATGCAAGGCAGTATCATGGTATATTAAGGCGGCGCCAATCTCGTGCAAAAGCTGAATCAGAAAATAAGGCCAACAAAATCCGCAAGCCTTACCTACATGAGTCCCGCCATCTGCATGCTTTGAAAAGGGCAAGGGGGT CCGGTGGTCGATTTCTCAACTCTAAGGCTGTGGAGGGGAAGCAAGACACTAAATCTGTAGATAAAAAGGAT GGAGCTGTGCCATCTGAGGAGAAGAGAGACAAGAAGTTGGCAAATAGCATTATCAAATTGGAGAACTCGAGCCCAACAACACAACCAGGTGCAGATGCGTCCGATGTTGTATGATGCAAATTTAGCCAATCCCTCCCTAATCCAACCAAATTGCCAGAATCGATCGAATTGTGTGCTTGCTTTCTGTTCG TGACAGTTTAAGTCTGTACATAGCTGTTAGTTTTGATGATTGGATAAATCCATGATAGTATAGTGAACATGTTGTGGGAGCAGTTCAGTGCTAGGGTTTGTTGCTGAGTGTAGATTATGAACCTTGTGTCACTGTTGTGTTTTGCTTCTGTTAATGAATGGTAGC ]
[-] EMBL CF320158 [ CGCCATCTGCATGCTTTGAAAAGGGCAAGGGGGT CCGGTGGTCGATTTCTCAACTCTAAGGCTGTGGAGGGGAAGCAAGACACTAAATCTGTAGATAAAAAGGAT GGAGCTGTGCCATCTGAGGAGAAGAGAGACAAGAAGTTGGCAAATAGCATTATCAAATTGGAGAACTCGAGCCCAACAACACAACCAGG GCAGATGCGTCCGATGTTGTATGATGCAAATTTAGCCAATCCCTCCCT ATCCAACCAAATTGCCAGAATCGATCGAATTGTGTGCTTGCTTTCAGTTAGATGACAGTTTAAGTCTGTACATAGCTGTTAGTTTTGATGATTGGATAAATCCATGATAGTATAGTGAACATGTTGTGGGAGCAGTTCAGTGCTAGGGTTTGTTGCTGAGTGTAGATTATGAACCTTGTGTCACTGTTGTGTTTTGCTTCTGTTAATGAATGGTAGCTTACGATGTTAGCTTTTGTGAATTTCAaaaa ]
[-] EMBL CF327662 [ AGACACTAAATCTGTAGATAAAAAGGAT GGAGCTGTGCCATCT GAGAAGAGAGACAACAAGTTGGCAAATA CATTATCAAATTGGAGAACTCGAGCCCAACAACACAACCAGGCGCACATGCGGCCGATGTTGTATGATGCAAATTTAGCCAATCCCTCCCTAATCCAACCAAATTGCCAGAATCGACCGAATTGTGTGCTTGCTTTCTGTTCG TGACAGTTTAAGTCTGTACATAGCTGTTAGTTTTGATGATTGGATAAATCCATGATAGTATAGTGAACATATTGTGGGAGCAGTTCAGTGCTAGGGTTTGTTGCTGAGTGTAGATTATGAACCTTGTGTCACTGTTGTGTTTTGCTTCTGTTAATGAATGGTAGCTTACAATGGGAACTTTTGTGAATTTGAGGTTGAACAATAGTTCCTTGGAAATACCATGAGAATAACTTGTTTAAAAAAA]
[-] EMBL CF278750 [ AAATTGGAGAACTCGAGCCCAACAACACAACCAGGTGCAGATGCGTCCGATGTTGTATGATGCAAATTTAGCCAATCCCTCCCTAATCCAACCAAATTGCCAGAATCGATCGAATTGTGTGCTTGCTTTCTGTTCG TGACAGTTTAAGTCTGTACATAGCTGTTAGTTTTGATGATAGAATAAATCCATGATAGTATAGAAAACATGTTGTGGGAGCAGAAAAATGCTAGGGTTTGTTGCTGAGTGTAGATTATGAACCTTGTGTCACTGTAGTGTTTTGCTTCTGTTAATGAATGGTAGCTTACAATGGGAACTTTTGTGAATTTCAGGTTGAACAATAGTT ]
consensusID : consensus_11187#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 425 fasta sequence
[CACCCGGAAACCAGCTATTGACCACTGATTATCGAATTTTAATACAGACTCCACCTATAAGGGAATTTGGGCCCCTCCGAGGCCACAGAATTTCGGCACCGAGGAGCCACATCCCCTCCCCTAATCCACACCCCAATTGCCACGAATTCGATTCGAATTGTTGTGCTTGCTCTTCTGGTTCGTGACCACGCTTTAAGTTCTGGAAATAGCCTGTTAGGTTTTGATGAATTGGAAAAATCCACTGATAGTAATAGGGAAAACTGTTGTGGGAACACGTTCAGGGCTAGGGTTTGTTGCTGAGTGTAGATTATGAACCCCTGTGTCACTGTTGTGTTTTGCTTCTGTTAATGAATGGTAGCTTACCCATGGGAACTTTTGTGAATTTGAGGTTGAACCATAGTTCCCTTGGAAATACCCATGAGAAT]
[-] EMBL BU673640 [CACCCGGAAACCAGCTATTGACCACTGATTATCGAATTTTAATACAGACTCCACCTATAAGGGAATTTGGGCCCCTCCGAGGCCACAGAATTTCGGCACCGAGGAGCCACATCCCCTCCCCTAATCCACACCCCAATTGCCACGAATTCGATTCGAATTGTTGTGCTTGCTCTTCTGGTTCGTGACCACGCTTTAAGTTCTGGAAATAGCCTGTTAGGTTTTGATGAATTGGAAAAATCCACTGATAGTAATAGGGAAAACTGTTGTGGGAACACGTTCAGGGCTAGGGTTTGTTGCTGAGTGTAGATTATGAACCCCTGTGTCACTGTTGTGTTTTGCTTCTGTTAATGAATGGTAGCTTACCCATGGGAACTTTTGTGAATTTGAGGTTGAACCATAGTTCCCTTGGAAATACCCATGAGAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11187#0 AAGCACATCCGCCTCAAACACGACAAACCCCCCCTACCCTGTTCATCTTCGAGAGATTCC 60
consensus_11187#1 ------------------------------------------------------------
consensus_11187#0 TCCCAATCCCGAGCAGAATCCCCCGCCCCGGCGAATCCGCGCGGCGCTCGAGTGAATTTG 120
consensus_11187#1 ------------------------------------------------------------
consensus_11187#0 ACTAGCTAGTAGCCACGCATGAAGCCAGATGGTGAAACTCAGCTTCGTCCTACAGCTGCT 180
consensus_11187#1 ------------------------------------------------------------
consensus_11187#0 GGACATCCAGATCCTGGTTTGGGCACATCATCTGCAGAATACGTGGCCTCTCTAGGACCA 240
consensus_11187#1 ------------------------------------------------------------
consensus_11187#0 GCTACAGCTCCAGTATCTTATCCATATATCAGTACCTATTATGGAGGCACTTATGGTGCT 300
consensus_11187#1 ------------------------------------------------------------
consensus_11187#0 TATAGTGGACAACCTCTGGTTAACGCTGCTTTAATGGCAATGCCTCCGCATTCTGTGCCC 360
consensus_11187#1 ------------------------------------------------------------
consensus_11187#0 TTGGTGACCGATGCTGTTGTAGAGCCCATATATGTCAATGCAAGGCAGTATCATGGTATA 420
consensus_11187#1 ------------------------------------------------------------
consensus_11187#0 TTAAGGCGGCGCCAATCTCGTGCAAAAGCTGAATCAGAAAATAAGGCTAACAAAATCCGC 480
consensus_11187#1 ------------------------------------------------------------
consensus_11187#0 AAGCCTTACCTACATGAGTCCCGCCATCTGCATGCTTTGAAAAGGGCAAGGGGGTCCGGT 540
consensus_11187#1 ------------------------------------------------------------
consensus_11187#0 GGTCGATTTCTCAACTCTAAGGCTGTGGAGGGGAAGCAAGACACTAAATCTGTAGATAAA 600
consensus_11187#1 ------------------------------------------------------------
consensus_11187#0 AAGGATGGAGCTGTGCCATCTGAGAAGAGAGACAACAAGTTGGCAAATACATTATCAAAT 660
consensus_11187#1 ----------------CACCCG------GAAACCAGCTATTGACCACTG-ATTATCGAAT 37
** * * ** ** * *** * * * ****** ***
consensus_11187#0 TGGAGAACTCGAGCCCAACAACACAACCAGGTGCAGATGCGTCCGATGTTGTATGATGCA 720
consensus_11187#1 TTTAATACA-GACTCCACC--TATAAGGGAATTTGGGCCCCTCCGAGGCCACAGAATTTC 94
* * ** ** *** * * ** * * * ***** * * **
consensus_11187#0 AATTT-----AGCCA-ATCCCT--CCCTAATCCAA--CCAAATTGCCAGAA--TCGAT-C 767
consensus_11187#1 GGCACCGAGGAGCCACATCCCCTCCCCTAATCCACACCCCAATTGCCACGAATTCGATTC 154
***** ***** ********** ** ******** * ***** *
consensus_11187#0 GAATTGT-GTGCTTGCTTTCT--GTTCGTGACAG---TTTAAGT-CTGTACATAGC-TGT 819
consensus_11187#1 GAATTGTTGTGCTTGCTCTTCTGGTTCGTGACCACGCTTTAAGTTCTGGAAATAGCCTGT 214
******* ********* * ********* ******* *** * ***** ***
consensus_11187#0 TAG-TTTTGATGA-TTGGATAAATCCA-TGATAGTA-TAGTGAACA-TGTTGTGGGAGCA 874
consensus_11187#1 TAGGTTTTGATGAATTGGAAAAATCCACTGATAGTAATAGGGAAAACTGTTGTGGGAACA 274
*** ********* ***** ******* ******** *** *** * ********** **
consensus_11187#0 -GTTCAGTGCTAGGGTTTGTTGCTGAGTGTAGATTATGAACCT-TGTGTCACTGTTGTGT 932
consensus_11187#1 CGTTCAGGGCTAGGGTTTGTTGCTGAGTGTAGATTATGAACCCCTGTGTCACTGTTGTGT 334
****** ********************************** ****************
consensus_11187#0 TTTGCTTCTGTTAATGAATGGTAGCTTACA-ATGGGAACTTTTGTGAATTTCAGGTTGAA 991
consensus_11187#1 TTTGCTTCTGTTAATGAATGGTAGCTTACCCATGGGAACTTTTGTGAATTTGAGGTTGAA 394
***************************** ******************** ********
consensus_11187#0 CAATAGTTCC-TTGGAAATACC-ATGAGAATAACTTGTTTAAAAAAA 1036
consensus_11187#1 CCATAGTTCCCTTGGAAATACCCATGAGAAT---------------- 425
* ******** *********** ********
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||