These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11200#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1626 fasta sequence [CTCTCTCTCTCTCTCATAAAGTAGGCGAAGCTGCAGCTGCAGCGGCATCAGCTGAAGCAGCAGCAGCAGCACAGAAGCAGCTTCCCTTCCTTCCGTATAGTGTAACGT-ACGCATCACCACCTCGCGGGCTGGAGATGGAGAAGGAGTAGGAGTAGGAGTGACGCCTCCGGATTTCCCACGCCTCGACGAACCCCCACAACCCCGAGATCGATCGGGAGGAGGACGACCACGCCCTTCACCTGCCCCCAAATCTTGCCCCGATCTCCCCCGACCGCGGCAATGGGGGCCGCCTCCGACGACGCCGTCAAGCAGCTCGCCCTCCTCATGGACCAAGTGGAGGCGCCGCTGAGGAGGACGTTTCAGAATGTGCACCAGGGCTATCCTAAAGAAACATTATTGCGTTTCCTTAAGGCCAGAGAGTGGAACGTATCTAAGGCTCATAAAATGCTTGTAGACTCTTTGAATT-GGAGGATTCAAAACGAAATCGATACTGTTCTGGAGAGACCTATAGTCCCAGTAGATTTGTACAGATCAATCCGTGATTCACAACTTGTTGGACTCTCAGGATACACAAAGGAGGGTCTCCCAGTTTTTGCCGTTGGTGTTGGGCAGAGCACATATGACAAAGCTTCGGTCCATTACTATGTGCAATCTCATATTCAGATTAATGAGTACCGTGATCGTGTAATTTTGCCCATGTTGACGGAAAAATTTGGGCGGCCTGTTACCACCTGTGTAAAAGTTTTGGACATGACTGGCTTGAAGTTGTCAGCACTGAGCCAAATGAAGATGTTGACTTCAATCTCAACGGTTGATGATTTGAACTACCCTGAAAAAACGGAGACGTACTATGTAGTTAATGTTCCCTATATATTTTCTGCATGTTGGAAGGTTGTGAAACCCCTGTTGCAGGAGAGGACAAAAAAGAAGGTTAAAGTTTTGCATGGTTGTGGAAGAGATGAGCTTCTGAAGATTATGGACTATTCATCTCTTCCACATTTCTGCCGCCGGGAGGGCTCTGGCTCATCCAAACATTCATCTACTGACGCTGATGACTGCTACTCACTTGACCATCCTTTCCACAAAGAGCTTTATGGTCACATTGAGGAGCTAGCATCGTGCAAGGAACTCATCAAGATGGGATCATTACATGTCAGCATTCCCGAGCCTGACCCCGATGACGCAAAGATTGTTGAGGTCATCCAAGCTGAATTCCAGAAGATCGGTGAGCAGAATGGATCCGCCAATGGTCACAAGGTTTAGCCAAAACATTGGCCATCTGCAGAACACCTTAACCAGTGCTGGTGACTTCTGAAT-CTGATGAAGTTGATTACTACTGTCCATGTCAGTAATTTTGTTGACAACCCCCCATTTTCTGGGGGGAATATAGCAGCAGCAGCAGCAGCAAGGTCTTGCATCATTATATTCCCATGATGATGCAAATAAACAGTGGTGCAGCCTTGAGTTGATAGAGGAAGAGATGAACCAGTCACCAGTGTATATGAAATTAGATGGAATTGAAAGCCATAAACATGTTTTTGTTAGTGTAACTTACATATGTTAAAGCTGTTACAAGGAAATCCATGGATGTTGAAAGACTTCTTTAAAAAAAAAAAGCTGTCATAA] [+] EMBL CF326427 [CTCTCTCTCTCTCTCATAAAGTAGGCGAAGCTGCAGCTGCAGCGGCATCAGCTGAAGCAGCAGCAGCAGCACAGAAGCAGCTTCCCTTCCTTCCGTATAGTGTAACGT ACGCATCACCACCTCGCGGGCTGGAGATGGAGAAGGAGTAGGAGTAGGAGTGACGCCTCCGGATTTCCCACGCCTCGACGAACCCCCACAACCCCGAGATCGATCGGGAGGAGGACGACCACGCCCTTCACCTGCCCCCAAATCTTGCCCCGATCTCCCCCGACCGCGGCAATGGGGGCCGCCTCCGACGACGCCGTCAAGCAGCTCGCCCTCCTCATGGACCAAGTGGAGGCGCCGCTGAGGAGGACGTTTCAGAATGTGCACCAGGGCTATCCTAAAGAAACATTATTGCGTTTCCTTAAGGCCAGAGAGTGGAACGTATCTAAGGCTCATAAAATGCTTGTAGACTCTTTGAATT GGAGGATTCAAAACGAAATCGATACTGTTCTGGAGAGACCTATAGTCCCAGTAGATTTGTACAGATCAATCCGTGATTCACAACTTGTTGGACTCTCAGGATACACAAAGGAGGGTCTCCCAGTTTTTGCCGTTGGTGTTGGGCAGAGCACATATGACAAAGCTTCGGTCCATTACTATGTGCAATCTCATATTCAGATT ] [+] EMBL AK068100 [ AAGCAGCAGCAGCAGCACAGAAGCAGCTTCCCTTCCTTCCGTATAGTGTAACGT ACGCATCACCACCTCGCGGGCTGGAGATGGAGAAGGAGTAGGAGTAGGAGTGACGCCTCCGGATTTCCCACGCCTCGACGAACCCCCACAACCCCGAGATCGATCGGGAGGAGGACGACCACGCCCTTCACCTGCCCCCAAATCTTGCCCCGATCTCCCCCGACCGCGGCAATGGGGGCCGCCTCCGACGACGCCGTCAAGCAGCTCGCCCTCCTCATGGACCAAGTGGAGGCGCCGCTGAGGAGGACGTTTCAGAATGTGCACCAGGGCTATCCTAAAGAAACATTATTGCGTTTCCTTAAGGCCAGAGAGTGGAACGTATCTAAGGCTCATAAAATGCTTGTAGACTCTTTGAATT GGAGGATTCAAAACGAAATCGATACTGTTCTGGAGAGACCTATAGTCCCAGTAGATTTGTACAGATCAATCCGTGATTCACAACTTGTTGGACTCTCAGGATACACAAAGGAGGGTCTCCCAGTTTTTGCCGTTGGTGTTGGGCAGAGCACATATGACAAAGCTTCGGTCCATTACTATGTGCAATCTCATATTCAGATTAATGAGTACCGTGATCGTGTAATTTTGCCCATGTTGACGGAAAAATTTGGGCGGCCTGTTACCACCTGTGTAAAAGTTTTGGACATGACTGGCTTGAAGTTGTCAGCACTGAGCCAAATGAAGATGTTGACTTCAATCTCAACGGTTGATGATTTGAACTACCCTGAAAAAACGGAGACGTACTATGTAGTTAATGTTCCCTATATATTTTCTGCATGTTGGAAGGTTGTGAAACCCCTGTTGCAGGAGAGGACAAAAAAGAAGGTTAAAGTTTTGCATGGTTGTGGAAGAGATGAGCTTCTGAAGATTATGGACTATTCATCTCTTCCACATTTCTGCCGCCGGGAGGGCTCTGGCTCATCCAAACATTCATCTACTGACGCTGATGACTGCTACTCACTTGACCATCCTTTCCACAAAGAGCTTTATGGTCACATTGAGGAGCTAGCATCGTGCAAGGAACTCATCAAGATGGGATCATTACATGTCAGCATTCCCGAGCCTGACCCCGATGACGCAAAGATTGTTGAGGTCATCCAAGCTGAATTCCAGAAGATCGGTGAGCAGAATGGATCCGCCAATGGTCACAAGGTTTAGCCAAAACATTGGCCATCTGCAGAACACCTTAACCAGTGCTGGTGACTTCTGAAT CTGATGAAGTTGATTACTACTGTCCATGTCAGTAATTTTGTTGACAACCCCCCATTTTCTGGGGGGAATATAGCAGCAGCAGCAGCAGCAAGGTCTTGCATCATTATATTCCCATGATGATGCAAATAAACAGTGGTGCAGCCTTGAGTTGATAGAGGAAGAGATGAACCAGTCACCAGTGTATATGAAATTAGATGGAATTGAAAGCCATAAACATGTTTTTGTTAGTGTAACTTACATATGTTAAAGCTGTTACAAGGAAATCCATGGATGTTGAA ] [+] EMBL AU075444 [ CAGAAGCAGCTTCCCTTCCTTCCGTATAGTGTAACGTAACGCATCACCACCTCGCGGGCTGGAGATGGAGAAGGAGTAGGAGTAGGAGTGACGCCTCCGGATTTCCCACGCCTCGACGAACCCCCACAACCCCGAGATCGATCGGGAGGAGGACGACCACGCCCTTCACCTGCCCCCAAATCTTGCCCCGATCTCCCCCGACCGCGGCAATGGGGGCCGCCTCCGACGACGCCGTCAAGCAGCTCGNCCTCCTCATGGACCAAGTGGAGGCGCCGCTGAGGAGGACGTTTCAGAATGTGCACCAGGGCTATCCTAAAGAAACATTATTGCGTTTCCTTAAGGCCAGAGAGTGGAACGTATCTAAGGCTCATAAAATGCTTGTAGACTCTTTGAATTGGGAGGATTCAAAATGAAATCGATACTGTTCTGGAGAGACCTATAGTCC ] [+] EMBL CB684948 [ AAAGATTGTTGAGGTCATCCAAGCTGAATTCCAGAAGATCGGTGAGCAGAATGGATCCGCCAATGGTCACAAGGTTTAGCCAAAACATTGGCCATCTGCAGAACACCTTAACCAGTGCTGGTGACTTCTGAAT CTGATGAAGTTGATTACTACTGTCCATGTCAGTAATTTTGTTGACAACCCCCCATTTTCTGGGGGGAATATAGCAGCAGCAGCAGCAGCAAGGTCTTGCATCATTATATTCCCATGATGATGCAAATAAACAGTGGTGCAGCCTTGAGTTGATAGAGGAAGAGATGAACCAGTCACCAGTGTATATGAAATTAGATGGAATTGAAAGCCATAAACATGTTTTTGTTAGTGTAACTTACATATGTTAAAGCTGTTACAAGGAAATCCATGGATGTTGAAAGACTTCTTTAAAAAAAAAAAGCTGTCATAA] [+] EMBL AU031068 [ CTTCTGAATCCTGNTGAAGTTGATTACTACTGTCCATGTCAGTAATTTTGTTGACAACCCCCCATTTTCTGGGGGGAATATAGCAGCAGCAGCAGCAGCANGGTCTTGCATCATTATATTCCCATGATGATGCAAATAAACAGTGGTGCAGCCTTGAGTTGATAGAGGAAGAGATGAACCAGTCACCAGTGTATATGAAATTAGATGGAATTGAAAGCCATAAACATGTTTTTGTTAGTGTAACTTACATATGTTAAAGCTGTTACAAGGAAATCCATGGATGTTGAAAGACTTCTTTAAAAA ] [-] EMBL CB636683 [ tTGGGGGGAATATAGCAGCAGCAGCAGCAGCAAGGTCTTGCATCATTATATTCCCATGATAAAAAAAAAAAACAGTGGTGCAGCTTTGAGTTGATAGAGGAAGAGATGAACCAGTCACCAGTGTATATGAAATTAGATGGAATTGAAAGCCATAAACATGTTTTTGTTAGTGTAACTTACATATGTTAAAGCTG ] consensusID : consensus_11200#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 610 fasta sequence [GGAAATGGCAAAGCCGCCC--AGAACCTGTT-TTCCATTGTGC-TCCAAGCACCCCTTCCAACAATAGTTTCCAGAAAAAGCGATTCATAATTATTCCTCTCTTTCCTCTATGCAACAATAGTCAATACACTTAGTGTTATTGCTTTCTAGAGTCGGCTGAGAGTTACATAATCTTGAAAAAGATTGTTAGTGTTGGTGTTCACAAAAATACTTACAACCCTGAAGGGAAGTAAACCAAATACCATAACCAGCATATATTACACTATATAACCTACCTTTGCACCAACAGTCCATACTTGTATGCATGACTAGAACATATACATAATGCAGCCATTTTATGTTCCTTGGGATATAGTATTCGTTGCTGATTCTTGAATTCCTTCACTTGGATGGTTTTTATGCGATATGATTGATTTGCAAATCATCCTTACATGTGACTTGTGAAGTGAATATTGCTTGAATTAAGGAATATCTAAATGTATCTCTTTTCTCAGAATGTGCACCAGGGCTATCCTAAAGAAACATTATTGCGTTTCCTTAAGGCCAGAGAGTGGAACGTATCTAAGGCTCATAAAATGCTTGTAGACTCTTTGAATTGGAGGATTCAAAACGA] [+] EMBL CB636667 [GGAAATGGCAAAGCCGCCC AGAACCTGTT TTCCATTGTGC TCCAAGCACCCCTTCCAACAATAGTTTCCAGAAAAAGCGATTCATAATTATTCCTCTCTTTCCTCTATGCAACAATAGTCAATACACTTAGTGTTATTGCTTTCTAGAGTCGGCTGAGAGTTACATAATCTTGAAAAAGATTGTTAGTGTTGGTGTTCACAAAAATACTTACAACCCTGAAGGGAAGTAAACCAAATACCATAACCAGCATATATTACACTATATAACCTACCTTTGCACCAACAGTCCATACTTGTATGCATGACTAGAACATATACATAATGCAGCCATTTTATGTTCCTTGGGATATAGTATTCGTTGCTGATTCTTGAATTCCTTCACTTGGATGGTTTTTATGCGATATGATTGATTTGCAAATCATCCTTACATGTGACTTGTGAAGTGAATATTGCTTGAATTAAGGAATATCTAAATGTATCTCTTTTCTCAGAATGTGCACCAGGGCTATCCTAAAGAAACATTATTGCGTTTCCTTAAGGCCAGAGAGTGGAACGTATCTAAGGCTCATAAA ] [+] EMBL CB636682 [ agAGCCACCCAAAGAACCTGTTATTCCATTGTCCATCCAATCACCCCTTCCAACAATAGTTTCCAGAAAAAGCGATTCAGAATTATTCCTCTCTTTCCTCTATGCAACAATAGTCAATACACTTAGTTTTATTCCTTTCTAGAGTCGTCTGAGAGTTACATAATCTTGAAAAAGATTGTCACTATTTGTGTTCACAAAAATACTTACAACCCTGAAGGGAAGTAAACCAAATACCATAACCAGCATATATTACACTATATAACCTACCTTTGCACCAACAGTCCATACTTGTATGCATGACTAGAACATATACATAATGCAGCCATTTTATGTTCCTTGGGATATAGTATTCGTTGCTGATTCTTGAATTCCTTCACTTGGATGGTTTTTATGCGATATGATTGATTTGCAAATCATCCTTACATGTGACTTGTGAAGTGAATATTGCTTGAATTAAGGAATATCTAAATGTATCTCTTTTCTCAGAATGTGCACCAGGGCTATCCTAAAGAAACATTATTGCGTTTCCTTAAGGCCAGAGAGTGGAACGTATCTAAGGCTCATAAAATGCTTGTAGACTCTTTGAATTGGAGGATTCAAAACGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11200#0 CTCTCTCTCTCTCTCATAAAGTAGGCGAAGCTGCAGCTGCAGCGGCATCAGCTGAAGCAG 60 consensus_11200#1 ------------------------------------------------------------ consensus_11200#0 CAGCAGCAGCACAGAAGCAGCTTCCCTTCCTTCCGTATAGTGTAACGTACGCATCACCAC 120 consensus_11200#1 ------------------------------------------------------------ consensus_11200#0 CTCGCGGGCTGGAGATGGAGAAGGAGTAGGAGTAGGAGTGACGCCTCCGGATTTCCCACG 180 consensus_11200#1 ------------------------------------------------------------ consensus_11200#0 CCTCGACGAACCCCCACAACCCCGAGATCGATCGGGAGGAGGACGACCACGCCCTTCACC 240 consensus_11200#1 ------------------------------------------------------------ consensus_11200#0 TGCCCCCAAATCTTGCCCCGATCTCCCCCGACCGCGGCAATGGGGGCCGCCTCCGACGAC 300 consensus_11200#1 ------------------------------------------------GGAAATGGCAAA 12 * * * * consensus_11200#0 GCCGTCAAGCAGCTCGCCCTCCTCATGGACCAAGTGGAGGCGCCGCTGAGGAGGACGTTT 360 consensus_11200#1 GCCGCCCAGAACCTGTTTTCCATTGTGCTCCAAGCA----CCCCTTCCAACAATAGTTTC 68 **** * ** * ** * * ** ***** * ** * * * ** consensus_11200#0 CAGAATGTGCACCAGGGCTATCCTAAAGAAACATTATTGCGTTTCCTTAAGGCCAGAGAG 420 consensus_11200#1 CAGAA--------AAAGCGATTC---ATAATTATTCCTCTCTTTCCTCTATGCAACAATA 117 ***** * ** ** * * ** *** * ****** * ** * * consensus_11200#0 TGGAACGTATCTAAGGCTCATAAAATGCTTGTAGACTCTTTGAATTGGAGGATTCAAAAC 480 consensus_11200#1 GTCAATACACTTAGTG-TTATTGCTTTCTAGAGTCGGCTGAGAGTTACATAATCTTGAAA 176 ** * ** * * ** * ** * ** ** ** * ** ** consensus_11200#0 GAAATCGATACTGTTCTGGAGAGACCTATAGTCCCAGTAGATTTGTACAGAT-CAATCCG 539 consensus_11200#1 AAGATTGTTAGTGTT--GGTGTTCACAAAAATACTTACAACCCTGAAGGGAAGTAAACCA 234 * ** * ** **** ** * * * * * * * ** * ** ** ** consensus_11200#0 TGATTCACAACTTGTTGGACTCTCAGGATACA--CAAAGGAGGGTCTCCCAGTTTTTGCC 597 consensus_11200#1 AATACCATAACCAGCATATATTACACTATATAACCTACCTTTGCACCAACAGTCCATACT 294 ** *** * * ** *** * * * * * **** * * consensus_11200#0 GTTGGTGTTGGGCAGAGCACATATGACAAAGCTTCGGTCCATTACTATGTGCAATCTCAT 657 consensus_11200#1 TGTATGCATGACTAGAACATATAC-ATAATGCAGCCATTTTATGTTCCTTGGGATATAGT 353 * ** *** ** *** * ** ** * * * * ** ** * * consensus_11200#0 ATTCAGATTAATGAGTACCGTGATCGTGTAATTTTGCCCATGTTGACG-GAAAAATTTGG 716 consensus_11200#1 ATTC--GTTGCTGATTCTTG-AATTCCTTCACTTGGATGGTTTTTATGCGATATGATTGA 410 **** ** *** * * ** * * ** * * ** * * ** * *** consensus_11200#0 GCGGCCTGTTACCACCTGTGTAAAAGTTTTGGACATGACTGGCTTGAAGTTGTCAGCACT 776 consensus_11200#1 TTTGCAAATCATC-CTTACATGTGACTTGTGAA-GTGA--------ATATTGCTTGAATT 460 ** * * * * * * * ** ** * *** * *** * * * consensus_11200#0 GAGCCAAATGAAGATGTTGACTTCAATCTCAACGGTTGATGATTTGAACTACCCTGAAAA 836 consensus_11200#1 AAGGAATATCTAAATGT-ATCTCTTTTCTCA--GAATGTGCACCAGGGCTATCCTAAAGA 517 ** * ** * **** ** ***** * ** * * *** *** ** * consensus_11200#0 AACGGAGACGTACTATGT---AGTTAATGTTCCCTATATATTTTCTGCATGTTGGAAGGT 893 consensus_11200#1 AACATTATTGCGTTTCCTTAAGGCCAGAGAGTGGAACGTATCTAAGGCTCATAAAATGCT 577 *** * * * * * * * *** * ** * * * * consensus_11200#0 TGTGAAACCCCTGTTGCAGGAGAGGACAAAAAAGAAGGTTAAAGTTTTGCATGGTTGTGG 953 consensus_11200#1 TGTAGACTCT---TTGAATTGGAGGATTCAAAACGA------------------------ 610 *** * * *** * ***** **** * consensus_11200#0 AAGAGATGAGCTTCTGAAGATTATGGACTATTCATCTCTTCCACATTTCTGCCGCCGGGA 1013 consensus_11200#1 ------------------------------------------------------------ consensus_11200#0 GGGCTCTGGCTCATCCAAACATTCATCTACTGACGCTGATGACTGCTACTCACTTGACCA 1073 consensus_11200#1 ------------------------------------------------------------ consensus_11200#0 TCCTTTCCACAAAGAGCTTTATGGTCACATTGAGGAGCTAGCATCGTGCAAGGAACTCAT 1133 consensus_11200#1 ------------------------------------------------------------ consensus_11200#0 CAAGATGGGATCATTACATGTCAGCATTCCCGAGCCTGACCCCGATGACGCAAAGATTGT 1193 consensus_11200#1 ------------------------------------------------------------ consensus_11200#0 TGAGGTCATCCAAGCTGAATTCCAGAAGATCGGTGAGCAGAATGGATCCGCCAATGGTCA 1253 consensus_11200#1 ------------------------------------------------------------ consensus_11200#0 CAAGGTTTAGCCAAAACATTGGCCATCTGCAGAACACCTTAACCAGTGCTGGTGACTTCT 1313 consensus_11200#1 ------------------------------------------------------------ consensus_11200#0 GAATCTGATGAAGTTGATTACTACTGTCCATGTCAGTAATTTTGTTGACAACCCCCCATT 1373 consensus_11200#1 ------------------------------------------------------------ consensus_11200#0 TTCTGGGGGGAATATAGCAGCAGCAGCAGCAGCAAGGTCTTGCATCATTATATTCCCATG 1433 consensus_11200#1 ------------------------------------------------------------ consensus_11200#0 ATGATGCAAATAAACAGTGGTGCAGCCTTGAGTTGATAGAGGAAGAGATGAACCAGTCAC 1493 consensus_11200#1 ------------------------------------------------------------ consensus_11200#0 CAGTGTATATGAAATTAGATGGAATTGAAAGCCATAAACATGTTTTTGTTAGTGTAACTT 1553 consensus_11200#1 ------------------------------------------------------------ consensus_11200#0 ACATATGTTAAAGCTGTTACAAGGAAATCCATGGATGTTGAAAGACTTCTTTAAAAAAAA 1613 consensus_11200#1 ------------------------------------------------------------ consensus_11200#0 AAAGCTGTCATAA 1626 consensus_11200#1 ------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||