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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11200#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1626 fasta sequence
[CTCTCTCTCTCTCTCATAAAGTAGGCGAAGCTGCAGCTGCAGCGGCATCAGCTGAAGCAGCAGCAGCAGCACAGAAGCAGCTTCCCTTCCTTCCGTATAGTGTAACGT-ACGCATCACCACCTCGCGGGCTGGAGATGGAGAAGGAGTAGGAGTAGGAGTGACGCCTCCGGATTTCCCACGCCTCGACGAACCCCCACAACCCCGAGATCGATCGGGAGGAGGACGACCACGCCCTTCACCTGCCCCCAAATCTTGCCCCGATCTCCCCCGACCGCGGCAATGGGGGCCGCCTCCGACGACGCCGTCAAGCAGCTCGCCCTCCTCATGGACCAAGTGGAGGCGCCGCTGAGGAGGACGTTTCAGAATGTGCACCAGGGCTATCCTAAAGAAACATTATTGCGTTTCCTTAAGGCCAGAGAGTGGAACGTATCTAAGGCTCATAAAATGCTTGTAGACTCTTTGAATT-GGAGGATTCAAAACGAAATCGATACTGTTCTGGAGAGACCTATAGTCCCAGTAGATTTGTACAGATCAATCCGTGATTCACAACTTGTTGGACTCTCAGGATACACAAAGGAGGGTCTCCCAGTTTTTGCCGTTGGTGTTGGGCAGAGCACATATGACAAAGCTTCGGTCCATTACTATGTGCAATCTCATATTCAGATTAATGAGTACCGTGATCGTGTAATTTTGCCCATGTTGACGGAAAAATTTGGGCGGCCTGTTACCACCTGTGTAAAAGTTTTGGACATGACTGGCTTGAAGTTGTCAGCACTGAGCCAAATGAAGATGTTGACTTCAATCTCAACGGTTGATGATTTGAACTACCCTGAAAAAACGGAGACGTACTATGTAGTTAATGTTCCCTATATATTTTCTGCATGTTGGAAGGTTGTGAAACCCCTGTTGCAGGAGAGGACAAAAAAGAAGGTTAAAGTTTTGCATGGTTGTGGAAGAGATGAGCTTCTGAAGATTATGGACTATTCATCTCTTCCACATTTCTGCCGCCGGGAGGGCTCTGGCTCATCCAAACATTCATCTACTGACGCTGATGACTGCTACTCACTTGACCATCCTTTCCACAAAGAGCTTTATGGTCACATTGAGGAGCTAGCATCGTGCAAGGAACTCATCAAGATGGGATCATTACATGTCAGCATTCCCGAGCCTGACCCCGATGACGCAAAGATTGTTGAGGTCATCCAAGCTGAATTCCAGAAGATCGGTGAGCAGAATGGATCCGCCAATGGTCACAAGGTTTAGCCAAAACATTGGCCATCTGCAGAACACCTTAACCAGTGCTGGTGACTTCTGAAT-CTGATGAAGTTGATTACTACTGTCCATGTCAGTAATTTTGTTGACAACCCCCCATTTTCTGGGGGGAATATAGCAGCAGCAGCAGCAGCAAGGTCTTGCATCATTATATTCCCATGATGATGCAAATAAACAGTGGTGCAGCCTTGAGTTGATAGAGGAAGAGATGAACCAGTCACCAGTGTATATGAAATTAGATGGAATTGAAAGCCATAAACATGTTTTTGTTAGTGTAACTTACATATGTTAAAGCTGTTACAAGGAAATCCATGGATGTTGAAAGACTTCTTTAAAAAAAAAAAGCTGTCATAA]
[+] EMBL CF326427 [CTCTCTCTCTCTCTCATAAAGTAGGCGAAGCTGCAGCTGCAGCGGCATCAGCTGAAGCAGCAGCAGCAGCACAGAAGCAGCTTCCCTTCCTTCCGTATAGTGTAACGT ACGCATCACCACCTCGCGGGCTGGAGATGGAGAAGGAGTAGGAGTAGGAGTGACGCCTCCGGATTTCCCACGCCTCGACGAACCCCCACAACCCCGAGATCGATCGGGAGGAGGACGACCACGCCCTTCACCTGCCCCCAAATCTTGCCCCGATCTCCCCCGACCGCGGCAATGGGGGCCGCCTCCGACGACGCCGTCAAGCAGCTCGCCCTCCTCATGGACCAAGTGGAGGCGCCGCTGAGGAGGACGTTTCAGAATGTGCACCAGGGCTATCCTAAAGAAACATTATTGCGTTTCCTTAAGGCCAGAGAGTGGAACGTATCTAAGGCTCATAAAATGCTTGTAGACTCTTTGAATT GGAGGATTCAAAACGAAATCGATACTGTTCTGGAGAGACCTATAGTCCCAGTAGATTTGTACAGATCAATCCGTGATTCACAACTTGTTGGACTCTCAGGATACACAAAGGAGGGTCTCCCAGTTTTTGCCGTTGGTGTTGGGCAGAGCACATATGACAAAGCTTCGGTCCATTACTATGTGCAATCTCATATTCAGATT ]
[+] EMBL AK068100 [ AAGCAGCAGCAGCAGCACAGAAGCAGCTTCCCTTCCTTCCGTATAGTGTAACGT ACGCATCACCACCTCGCGGGCTGGAGATGGAGAAGGAGTAGGAGTAGGAGTGACGCCTCCGGATTTCCCACGCCTCGACGAACCCCCACAACCCCGAGATCGATCGGGAGGAGGACGACCACGCCCTTCACCTGCCCCCAAATCTTGCCCCGATCTCCCCCGACCGCGGCAATGGGGGCCGCCTCCGACGACGCCGTCAAGCAGCTCGCCCTCCTCATGGACCAAGTGGAGGCGCCGCTGAGGAGGACGTTTCAGAATGTGCACCAGGGCTATCCTAAAGAAACATTATTGCGTTTCCTTAAGGCCAGAGAGTGGAACGTATCTAAGGCTCATAAAATGCTTGTAGACTCTTTGAATT GGAGGATTCAAAACGAAATCGATACTGTTCTGGAGAGACCTATAGTCCCAGTAGATTTGTACAGATCAATCCGTGATTCACAACTTGTTGGACTCTCAGGATACACAAAGGAGGGTCTCCCAGTTTTTGCCGTTGGTGTTGGGCAGAGCACATATGACAAAGCTTCGGTCCATTACTATGTGCAATCTCATATTCAGATTAATGAGTACCGTGATCGTGTAATTTTGCCCATGTTGACGGAAAAATTTGGGCGGCCTGTTACCACCTGTGTAAAAGTTTTGGACATGACTGGCTTGAAGTTGTCAGCACTGAGCCAAATGAAGATGTTGACTTCAATCTCAACGGTTGATGATTTGAACTACCCTGAAAAAACGGAGACGTACTATGTAGTTAATGTTCCCTATATATTTTCTGCATGTTGGAAGGTTGTGAAACCCCTGTTGCAGGAGAGGACAAAAAAGAAGGTTAAAGTTTTGCATGGTTGTGGAAGAGATGAGCTTCTGAAGATTATGGACTATTCATCTCTTCCACATTTCTGCCGCCGGGAGGGCTCTGGCTCATCCAAACATTCATCTACTGACGCTGATGACTGCTACTCACTTGACCATCCTTTCCACAAAGAGCTTTATGGTCACATTGAGGAGCTAGCATCGTGCAAGGAACTCATCAAGATGGGATCATTACATGTCAGCATTCCCGAGCCTGACCCCGATGACGCAAAGATTGTTGAGGTCATCCAAGCTGAATTCCAGAAGATCGGTGAGCAGAATGGATCCGCCAATGGTCACAAGGTTTAGCCAAAACATTGGCCATCTGCAGAACACCTTAACCAGTGCTGGTGACTTCTGAAT CTGATGAAGTTGATTACTACTGTCCATGTCAGTAATTTTGTTGACAACCCCCCATTTTCTGGGGGGAATATAGCAGCAGCAGCAGCAGCAAGGTCTTGCATCATTATATTCCCATGATGATGCAAATAAACAGTGGTGCAGCCTTGAGTTGATAGAGGAAGAGATGAACCAGTCACCAGTGTATATGAAATTAGATGGAATTGAAAGCCATAAACATGTTTTTGTTAGTGTAACTTACATATGTTAAAGCTGTTACAAGGAAATCCATGGATGTTGAA ]
[+] EMBL AU075444 [ CAGAAGCAGCTTCCCTTCCTTCCGTATAGTGTAACGTAACGCATCACCACCTCGCGGGCTGGAGATGGAGAAGGAGTAGGAGTAGGAGTGACGCCTCCGGATTTCCCACGCCTCGACGAACCCCCACAACCCCGAGATCGATCGGGAGGAGGACGACCACGCCCTTCACCTGCCCCCAAATCTTGCCCCGATCTCCCCCGACCGCGGCAATGGGGGCCGCCTCCGACGACGCCGTCAAGCAGCTCGNCCTCCTCATGGACCAAGTGGAGGCGCCGCTGAGGAGGACGTTTCAGAATGTGCACCAGGGCTATCCTAAAGAAACATTATTGCGTTTCCTTAAGGCCAGAGAGTGGAACGTATCTAAGGCTCATAAAATGCTTGTAGACTCTTTGAATTGGGAGGATTCAAAATGAAATCGATACTGTTCTGGAGAGACCTATAGTCC ]
[+] EMBL CB684948 [ AAAGATTGTTGAGGTCATCCAAGCTGAATTCCAGAAGATCGGTGAGCAGAATGGATCCGCCAATGGTCACAAGGTTTAGCCAAAACATTGGCCATCTGCAGAACACCTTAACCAGTGCTGGTGACTTCTGAAT CTGATGAAGTTGATTACTACTGTCCATGTCAGTAATTTTGTTGACAACCCCCCATTTTCTGGGGGGAATATAGCAGCAGCAGCAGCAGCAAGGTCTTGCATCATTATATTCCCATGATGATGCAAATAAACAGTGGTGCAGCCTTGAGTTGATAGAGGAAGAGATGAACCAGTCACCAGTGTATATGAAATTAGATGGAATTGAAAGCCATAAACATGTTTTTGTTAGTGTAACTTACATATGTTAAAGCTGTTACAAGGAAATCCATGGATGTTGAAAGACTTCTTTAAAAAAAAAAAGCTGTCATAA]
[+] EMBL AU031068 [ CTTCTGAATCCTGNTGAAGTTGATTACTACTGTCCATGTCAGTAATTTTGTTGACAACCCCCCATTTTCTGGGGGGAATATAGCAGCAGCAGCAGCAGCANGGTCTTGCATCATTATATTCCCATGATGATGCAAATAAACAGTGGTGCAGCCTTGAGTTGATAGAGGAAGAGATGAACCAGTCACCAGTGTATATGAAATTAGATGGAATTGAAAGCCATAAACATGTTTTTGTTAGTGTAACTTACATATGTTAAAGCTGTTACAAGGAAATCCATGGATGTTGAAAGACTTCTTTAAAAA ]
[-] EMBL CB636683 [ tTGGGGGGAATATAGCAGCAGCAGCAGCAGCAAGGTCTTGCATCATTATATTCCCATGATAAAAAAAAAAAACAGTGGTGCAGCTTTGAGTTGATAGAGGAAGAGATGAACCAGTCACCAGTGTATATGAAATTAGATGGAATTGAAAGCCATAAACATGTTTTTGTTAGTGTAACTTACATATGTTAAAGCTG ]
consensusID : consensus_11200#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 610 fasta sequence
[GGAAATGGCAAAGCCGCCC--AGAACCTGTT-TTCCATTGTGC-TCCAAGCACCCCTTCCAACAATAGTTTCCAGAAAAAGCGATTCATAATTATTCCTCTCTTTCCTCTATGCAACAATAGTCAATACACTTAGTGTTATTGCTTTCTAGAGTCGGCTGAGAGTTACATAATCTTGAAAAAGATTGTTAGTGTTGGTGTTCACAAAAATACTTACAACCCTGAAGGGAAGTAAACCAAATACCATAACCAGCATATATTACACTATATAACCTACCTTTGCACCAACAGTCCATACTTGTATGCATGACTAGAACATATACATAATGCAGCCATTTTATGTTCCTTGGGATATAGTATTCGTTGCTGATTCTTGAATTCCTTCACTTGGATGGTTTTTATGCGATATGATTGATTTGCAAATCATCCTTACATGTGACTTGTGAAGTGAATATTGCTTGAATTAAGGAATATCTAAATGTATCTCTTTTCTCAGAATGTGCACCAGGGCTATCCTAAAGAAACATTATTGCGTTTCCTTAAGGCCAGAGAGTGGAACGTATCTAAGGCTCATAAAATGCTTGTAGACTCTTTGAATTGGAGGATTCAAAACGA]
[+] EMBL CB636667 [GGAAATGGCAAAGCCGCCC AGAACCTGTT TTCCATTGTGC TCCAAGCACCCCTTCCAACAATAGTTTCCAGAAAAAGCGATTCATAATTATTCCTCTCTTTCCTCTATGCAACAATAGTCAATACACTTAGTGTTATTGCTTTCTAGAGTCGGCTGAGAGTTACATAATCTTGAAAAAGATTGTTAGTGTTGGTGTTCACAAAAATACTTACAACCCTGAAGGGAAGTAAACCAAATACCATAACCAGCATATATTACACTATATAACCTACCTTTGCACCAACAGTCCATACTTGTATGCATGACTAGAACATATACATAATGCAGCCATTTTATGTTCCTTGGGATATAGTATTCGTTGCTGATTCTTGAATTCCTTCACTTGGATGGTTTTTATGCGATATGATTGATTTGCAAATCATCCTTACATGTGACTTGTGAAGTGAATATTGCTTGAATTAAGGAATATCTAAATGTATCTCTTTTCTCAGAATGTGCACCAGGGCTATCCTAAAGAAACATTATTGCGTTTCCTTAAGGCCAGAGAGTGGAACGTATCTAAGGCTCATAAA ]
[+] EMBL CB636682 [ agAGCCACCCAAAGAACCTGTTATTCCATTGTCCATCCAATCACCCCTTCCAACAATAGTTTCCAGAAAAAGCGATTCAGAATTATTCCTCTCTTTCCTCTATGCAACAATAGTCAATACACTTAGTTTTATTCCTTTCTAGAGTCGTCTGAGAGTTACATAATCTTGAAAAAGATTGTCACTATTTGTGTTCACAAAAATACTTACAACCCTGAAGGGAAGTAAACCAAATACCATAACCAGCATATATTACACTATATAACCTACCTTTGCACCAACAGTCCATACTTGTATGCATGACTAGAACATATACATAATGCAGCCATTTTATGTTCCTTGGGATATAGTATTCGTTGCTGATTCTTGAATTCCTTCACTTGGATGGTTTTTATGCGATATGATTGATTTGCAAATCATCCTTACATGTGACTTGTGAAGTGAATATTGCTTGAATTAAGGAATATCTAAATGTATCTCTTTTCTCAGAATGTGCACCAGGGCTATCCTAAAGAAACATTATTGCGTTTCCTTAAGGCCAGAGAGTGGAACGTATCTAAGGCTCATAAAATGCTTGTAGACTCTTTGAATTGGAGGATTCAAAACGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11200#0 CTCTCTCTCTCTCTCATAAAGTAGGCGAAGCTGCAGCTGCAGCGGCATCAGCTGAAGCAG 60
consensus_11200#1 ------------------------------------------------------------
consensus_11200#0 CAGCAGCAGCACAGAAGCAGCTTCCCTTCCTTCCGTATAGTGTAACGTACGCATCACCAC 120
consensus_11200#1 ------------------------------------------------------------
consensus_11200#0 CTCGCGGGCTGGAGATGGAGAAGGAGTAGGAGTAGGAGTGACGCCTCCGGATTTCCCACG 180
consensus_11200#1 ------------------------------------------------------------
consensus_11200#0 CCTCGACGAACCCCCACAACCCCGAGATCGATCGGGAGGAGGACGACCACGCCCTTCACC 240
consensus_11200#1 ------------------------------------------------------------
consensus_11200#0 TGCCCCCAAATCTTGCCCCGATCTCCCCCGACCGCGGCAATGGGGGCCGCCTCCGACGAC 300
consensus_11200#1 ------------------------------------------------GGAAATGGCAAA 12
* * * *
consensus_11200#0 GCCGTCAAGCAGCTCGCCCTCCTCATGGACCAAGTGGAGGCGCCGCTGAGGAGGACGTTT 360
consensus_11200#1 GCCGCCCAGAACCTGTTTTCCATTGTGCTCCAAGCA----CCCCTTCCAACAATAGTTTC 68
**** * ** * ** * * ** ***** * ** * * * **
consensus_11200#0 CAGAATGTGCACCAGGGCTATCCTAAAGAAACATTATTGCGTTTCCTTAAGGCCAGAGAG 420
consensus_11200#1 CAGAA--------AAAGCGATTC---ATAATTATTCCTCTCTTTCCTCTATGCAACAATA 117
***** * ** ** * * ** *** * ****** * ** * *
consensus_11200#0 TGGAACGTATCTAAGGCTCATAAAATGCTTGTAGACTCTTTGAATTGGAGGATTCAAAAC 480
consensus_11200#1 GTCAATACACTTAGTG-TTATTGCTTTCTAGAGTCGGCTGAGAGTTACATAATCTTGAAA 176
** * ** * * ** * ** * ** ** ** * ** **
consensus_11200#0 GAAATCGATACTGTTCTGGAGAGACCTATAGTCCCAGTAGATTTGTACAGAT-CAATCCG 539
consensus_11200#1 AAGATTGTTAGTGTT--GGTGTTCACAAAAATACTTACAACCCTGAAGGGAAGTAAACCA 234
* ** * ** **** ** * * * * * * * ** * ** ** **
consensus_11200#0 TGATTCACAACTTGTTGGACTCTCAGGATACA--CAAAGGAGGGTCTCCCAGTTTTTGCC 597
consensus_11200#1 AATACCATAACCAGCATATATTACACTATATAACCTACCTTTGCACCAACAGTCCATACT 294
** *** * * ** *** * * * * * **** * *
consensus_11200#0 GTTGGTGTTGGGCAGAGCACATATGACAAAGCTTCGGTCCATTACTATGTGCAATCTCAT 657
consensus_11200#1 TGTATGCATGACTAGAACATATAC-ATAATGCAGCCATTTTATGTTCCTTGGGATATAGT 353
* ** *** ** *** * ** ** * * * * ** ** * *
consensus_11200#0 ATTCAGATTAATGAGTACCGTGATCGTGTAATTTTGCCCATGTTGACG-GAAAAATTTGG 716
consensus_11200#1 ATTC--GTTGCTGATTCTTG-AATTCCTTCACTTGGATGGTTTTTATGCGATATGATTGA 410
**** ** *** * * ** * * ** * * ** * * ** * ***
consensus_11200#0 GCGGCCTGTTACCACCTGTGTAAAAGTTTTGGACATGACTGGCTTGAAGTTGTCAGCACT 776
consensus_11200#1 TTTGCAAATCATC-CTTACATGTGACTTGTGAA-GTGA--------ATATTGCTTGAATT 460
** * * * * * * * ** ** * *** * *** * * *
consensus_11200#0 GAGCCAAATGAAGATGTTGACTTCAATCTCAACGGTTGATGATTTGAACTACCCTGAAAA 836
consensus_11200#1 AAGGAATATCTAAATGT-ATCTCTTTTCTCA--GAATGTGCACCAGGGCTATCCTAAAGA 517
** * ** * **** ** ***** * ** * * *** *** ** *
consensus_11200#0 AACGGAGACGTACTATGT---AGTTAATGTTCCCTATATATTTTCTGCATGTTGGAAGGT 893
consensus_11200#1 AACATTATTGCGTTTCCTTAAGGCCAGAGAGTGGAACGTATCTAAGGCTCATAAAATGCT 577
*** * * * * * * * *** * ** * * * *
consensus_11200#0 TGTGAAACCCCTGTTGCAGGAGAGGACAAAAAAGAAGGTTAAAGTTTTGCATGGTTGTGG 953
consensus_11200#1 TGTAGACTCT---TTGAATTGGAGGATTCAAAACGA------------------------ 610
*** * * *** * ***** **** *
consensus_11200#0 AAGAGATGAGCTTCTGAAGATTATGGACTATTCATCTCTTCCACATTTCTGCCGCCGGGA 1013
consensus_11200#1 ------------------------------------------------------------
consensus_11200#0 GGGCTCTGGCTCATCCAAACATTCATCTACTGACGCTGATGACTGCTACTCACTTGACCA 1073
consensus_11200#1 ------------------------------------------------------------
consensus_11200#0 TCCTTTCCACAAAGAGCTTTATGGTCACATTGAGGAGCTAGCATCGTGCAAGGAACTCAT 1133
consensus_11200#1 ------------------------------------------------------------
consensus_11200#0 CAAGATGGGATCATTACATGTCAGCATTCCCGAGCCTGACCCCGATGACGCAAAGATTGT 1193
consensus_11200#1 ------------------------------------------------------------
consensus_11200#0 TGAGGTCATCCAAGCTGAATTCCAGAAGATCGGTGAGCAGAATGGATCCGCCAATGGTCA 1253
consensus_11200#1 ------------------------------------------------------------
consensus_11200#0 CAAGGTTTAGCCAAAACATTGGCCATCTGCAGAACACCTTAACCAGTGCTGGTGACTTCT 1313
consensus_11200#1 ------------------------------------------------------------
consensus_11200#0 GAATCTGATGAAGTTGATTACTACTGTCCATGTCAGTAATTTTGTTGACAACCCCCCATT 1373
consensus_11200#1 ------------------------------------------------------------
consensus_11200#0 TTCTGGGGGGAATATAGCAGCAGCAGCAGCAGCAAGGTCTTGCATCATTATATTCCCATG 1433
consensus_11200#1 ------------------------------------------------------------
consensus_11200#0 ATGATGCAAATAAACAGTGGTGCAGCCTTGAGTTGATAGAGGAAGAGATGAACCAGTCAC 1493
consensus_11200#1 ------------------------------------------------------------
consensus_11200#0 CAGTGTATATGAAATTAGATGGAATTGAAAGCCATAAACATGTTTTTGTTAGTGTAACTT 1553
consensus_11200#1 ------------------------------------------------------------
consensus_11200#0 ACATATGTTAAAGCTGTTACAAGGAAATCCATGGATGTTGAAAGACTTCTTTAAAAAAAA 1613
consensus_11200#1 ------------------------------------------------------------
consensus_11200#0 AAAGCTGTCATAA 1626
consensus_11200#1 -------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||