cluster # 11204

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Oryza sativa
cluster # 11204 cluster # 11204 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11204#0 length = 840 sequences # 4

consensus_11204#1 length = 761 sequences # 4

consensusID : consensus_11204#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 840
fasta sequence

                              [ATATTTTCCCACGCATCCGTCTCCTCCTCGCGGAATAATAACCTTTTTTTTTCTTTTTCCAAGCGCCCTTCAAACCCATCTCCTCTCCCCTCTCCCTCCCAATTCGATGCAGCCGCGGTAGCAATTCGCATC-GCCCCGCCCTCCTCGCCGCGCGGATTCGCTCGCCGCCCCCGCCACCGCACCCCCATGGACGCCTCCGCCGGATCCGGCAATGCCTCCGGTGGCGCCGGCGCCGGCGCGTCCGCGTGCTGCTACTACTCCCTGCTCGGCATCCGGAAGAACGCGTCCGCCACCGACGTGCGCGCCGCCTACCGGAGGCTCGCCATGAAGTGGCACCCGGACCGGTGCGTGAGCGACCCCGGCGAGGCCAATCGGCGGTTCCAGCGGATCCAAGAGGCGTACTCCGTTCTGTCCGACAAGGGGAAGCGAGCCATGTACGACGCCGGGCTGTTCGATCCCCTCGACGACGACGACCAGGATTTCTCCGATTTCATGCAGGAGATGCTGGTGATGATGGATAACGTGAAAAACGAGAAGCCGGACACACTCGAGGACCTGCAGAAGATGCTGCAAGACATCGTCAGCGGCGACGGCGGAAGCCGCGGCGGCGGCGTCGGTGGCCGCGTGCCGTCGGACGGCACACGGAGGACGCGCGTCGCGCCCTACCCGGCGCAGTCGCGCAGGTGACCGGCGCGCCGGTGTACGAGACGTGCACACGCCTCTAAGTGATGAAAAGAGAGACAAGCAGAAGAAGAGAGGAAGCAAACGGGAAAGAAAAACCAATAAAATTTGGCAGAATTTGTTTCCCTTTTTTTTAGGTCATCAGATGATTGACTCCGT]

[+] EMBL AK066250             [ATATTTTCCCACGCATCCGTCTCCTCCTCGCGGAATAATAACCTTTTTTTTTCTTTTTCCAAGCGCCCTTCAAACCCATCTCCTCTCCCCTCTCCCTCCCAATTCGATGCAGCCGCGGTAGCAATTCGCATC GCCCCGCCCTCCTCGCCGCGCGGATTCGCTCGCCGCCCCCGCCACCGCACCCCCATGGACGCCTCCGCCGGATCCGGCAATGCCTCCGGTGGCGCCGGCGCCGGCGCGTCCGCGTGCTGCTACTACTCCCTGCTCGGCATCCGGAAGAACGCGTCCGCCACCGACGTGCGCGCCGCCTACCGGAGGCTCGCCATGAAGTGGCACCCGGACCGGTGCGTGAGCGACCCCGGCGAGGCCAATCGGCGGTTCCAGCGGATCCAAGAGGCGTACTCCGTTCTGTCCGACAAGGGGAAGCGAGCCATGTACGACGCCGGGCTGTTCGATCCCCTCGACGACGACGACCAGGATTTCTCCGATTTCATGCAGGAGATGCTGGTGATGATGGATAACGTGAAAAACGAGAAGCCGGACACACTCGAGGACCTGCAGAAGATGCTGCAAGACATCGTCAGCGGCGACGGCGGAAGCCGCGGCGGCGGCGTCGGTGGCCGCGTGCCGTCGGACGGCGCACGGAGGACGCGCGTCGCGCCCTACCCGGCGCAGTCGCGCAGGTGACCGGCGCGCCGGTGTACGAGACGTGCACACGCCTCTAAGTGATGAAAAGAGAGACAAGCAGAAGAAGAGAGGAAGCAAACGGGAAAGAAAAACCAATAAAATTTGGCAGAATTTGTTTCCCTTTTTTTTAGGTCATCAGATGATTGACTCCGT]
[+] EMBL AK104186             [                                   TAATAACCTTTTTTTTTCTTTTTCCAAGCGCCCTTCAAACCCATCTCCTCTCCCCTCTCCCTCCCAATTCGATGCAGCCGCGGTAGCAATTCGCATC GCCCCGCCCTCCTCGCCGCGCGGATTCGCTCGCCGCCCCCGCCACCGCACCCCCATGGACGCCTCCGCCGGATCCGGCAATGCCTCCGGTGGCGCCGGCGCCGGCGCGTCCGCGTGCTGCTACTACTCCCTGCTCGGCATCCGGAAGAACGCGTCCGCCACCGACGTGCGCGCCGCCTACCGGAGGCTCGCCATGAAGTGGCACCCGGACCGGTGCGTGAGCGACCCCGGCGAGGCCAATCGGCGGTTCCAGCGGATCCAAGAGGCGTACTCCGTTCTGTCCGACAAGGGGAAGCGAGCCATGTACGACGCCGGGCTGTTCGATCCCCTCGACGACGACGACCAGGATTTCTCCGATTTCATGCAGGAGATGCTGGTGATGATGGATAACGTGAAAAACGAGAAGCCGGACACACTCGAGGACCTGCAGAAGATGCTGCAAGACATCGTCAGCGGCGACGGCGGAAGCCGCGGCGGCGGCGTCGGTGGCCGCGTGCCGTCGGACGGCACACGGAGGACGCGCGTCGCGCCCTACCCGGCGCAGTCGCGCAGGTGACCGGCGCGCCGGTGTACGAGACGTGCACACGCCTCTAAGTGATGAAAAGAGAGACAAGCAGAAGAAGAGAGGAAGCAAACGGGAAAGAAAAACCAATAAAATTTGGCAGAATTTGTTTCCCTTTTTTTTAGGTCATCAGATGATTGACTCCGT]
[+] EMBL AK069897             [                                     ATAACCTTTTTTTTTCTTTTTCCAAGCGCCCTTCAAACCCATCTCCTCTCCCCTCTCCCTCCCAATTCGATGCAGCCGCGGTAGCAATTCGCATC GCCCCGCCCTCCTCGCCGCGCGGATTCGCTCGCCGCCCCCGCCACCGCACCCCCATGGACGCCTCCGCCGGATCCGGCAATGCCTCCGGTGGCGCCGGCGCCGGCGCGTCCGCGTGCTGCTACTACTCCCTGCTCGGCATCCGGAAGAACGCGTCCGCCACCGACGTGCGCGCCGCCTACCGGAGGCTCGCCATGAAGTGGCACCCGGACCGGTGCGTGAGCGACCCCGGCGAGGCCAATCGGCGGTTCCAGCGGATCCAAGAGGCGTACTCCGTTCTGTCCGACAAGGGGAAGCGAGCCATGTACGACGCCGGGCTGTTCGATCCCCTCGACGACGACGACCAGGATTTCTCCGATTTCATGCAGGAGATGCTGGTGATGATGGATAACGTGAAAAACGAGAAGCCGGACACACTCGAGGACCTGCAGAAGATGCTGCAAGACATCGTCAGCGGCGACGGCGGAAGCCGCGGCGGCGGCGTCGGTGGCCGCGTGCCGTCGGACGGCACACGGAGGACGCGCGTCGCGCCCTACCCGGCGCAGTCGCGCAGGTGACCGGCGCGCCGGTGTACGAGACGTGCACACGCCTCTAAGTGATGAAAAGAGAGACAAGCAGAAGAAGAGAGGAAGCAAACGGGAAAGAAAAACCAATAAAATTTGGCAGAATTTGTTTCCCTTTTTTTTAGGTCATCAGATGATTGACTCCGT]
[+] EMBL AU172455             [                                                    CTTTTTCCAAGCGCCCTTCAAACCCATCTCCTCTCCCCTCTCCCTCCCAATTCGATGCAGCCGCGGTAGCAATTCGCATCAGCCCCGCCCTCCTCGCCGCGCGGATTCGCTCGCCGCCCCCGCCACCGCACCCCCATGGACGCCTCCGCCGGATCCGGCAATGCCTCCGGTGGCGCCGGCGCCGGCGCGTCCGCGTGCTGCTACTACTCCCTGCTCGGCATCCGGAAGAACGCGTCCGCCACCGACGTGCGCGCCGCCTACCGGAGGCTCGCCATGAAGTGGCACCCGGACCGGTGCGTGAGCGACCCCGGCGAGGCCAATCGGCGGTTCCAGCGGATCCAAGAGGCGTACTCCGTTCTGTCCGACAAGGGGAAGCGAGCCATGTACGACGCCGGGCTGTTCGATCCCCTCGACGACGACGACCAGGATTT                                                                                                                                                                                                                                                                                                                                                                      ]




>consensus_11204#0
ATATTTTCCCACGCATCCGTCTCCTCCTCGCGGAATAATAACCTTTTTTTTTCTTTTTCC
AAGCGCCCTTCAAACCCATCTCCTCTCCCCTCTCCCTCCCAATTCGATGCAGCCGCGGTA
GCAATTCGCATCGCCCCGCCCTCCTCGCCGCGCGGATTCGCTCGCCGCCCCCGCCACCGC
ACCCCCATGGACGCCTCCGCCGGATCCGGCAATGCCTCCGGTGGCGCCGGCGCCGGCGCG
TCCGCGTGCTGCTACTACTCCCTGCTCGGCATCCGGAAGAACGCGTCCGCCACCGACGTG
CGCGCCGCCTACCGGAGGCTCGCCATGAAGTGGCACCCGGACCGGTGCGTGAGCGACCCC
GGCGAGGCCAATCGGCGGTTCCAGCGGATCCAAGAGGCGTACTCCGTTCTGTCCGACAAG
GGGAAGCGAGCCATGTACGACGCCGGGCTGTTCGATCCCCTCGACGACGACGACCAGGAT
TTCTCCGATTTCATGCAGGAGATGCTGGTGATGATGGATAACGTGAAAAACGAGAAGCCG
GACACACTCGAGGACCTGCAGAAGATGCTGCAAGACATCGTCAGCGGCGACGGCGGAAGC
CGCGGCGGCGGCGTCGGTGGCCGCGTGCCGTCGGACGGCACACGGAGGACGCGCGTCGCG
CCCTACCCGGCGCAGTCGCGCAGGTGACCGGCGCGCCGGTGTACGAGACGTGCACACGCC
TCTAAGTGATGAAAAGAGAGACAAGCAGAAGAAGAGAGGAAGCAAACGGGAAAGAAAAAC
CAATAAAATTTGGCAGAATTTGTTTCCCTTTTTTTTAGGTCATCAGATGATTGACTCCGT

consensusID : consensus_11204#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 761
fasta sequence

                              [TCGGCTTTGTTGGCCTACTGGAATTCGATGCAGCCGCGGTAGCAATTCGCATCGCCCCGCCCTCCTCGCCGCGCGGATTCGCTCGCCGCCCCCGCCACCGCACCCCCATGGACGCCTCCGCCGGATCCGGCAATGCCTCCGGTGGCGCCGGCGCCGGCGCGTCCGCGTGCTGCTACTACTCCCTGCTCGGCATCCGGAAGAACGCGTCCGCCACCGACGTGCGCGCCGCCTACCGGAGGCTCGCCATGAAGTGGCACCCGGACCGGTGCGTGAGCGACCCCGGCGAGGCCAATCGGCGGTTCCAGCGGATCCAAGAGGCGTACTCCGTTCTGTCCGACAAGGGGAAGCGAGCCATGTACGACGCCGGGCTGTTCGATCCCCTCGACGACGACGACCAGGATTTCTCCGA--TTTCATGCAGGAGATGCTGGTGATGATGGA-TAACGTGAAAAACGAGAA-G-CCGGACACACTCGAGGACCTGCAG-AAGATGCTGCAAGACATCGTCAGCGGCGACGGCGGAAGCCGCGG-CGGCGGCGTCGGTGGCCGCGTGCCGTCGGACGGCACACGGAGGACGCGCGTCGCGCCCTACCCGGCGCAGTCGCG-CAGGTGACCGGCGCG-CCGGTGTACGAGACGTGCACACGCCTCTAAGTGATG-AAAAGAGAGACAAGCAGAAG-AAGAGAGGAAGCAAACGGGAAAGAAAAACCAATAAAATTTGGCAGAATTTGTTTCCCTTTTTTTTAGGTCATCAGATGATTGACTCCGT]

[+] EMBL AK059801             [TCGGCTTTGTTGGCCTACTGGAATTCGATGCAGCCGCGGTAGCAATTCGCATCGCCCCGCCCTCCTCGCCGCGCGGATTCGCTCGCCGCCCCCGCCACCGCACCCCCATGGACGCCTCCGCCGGATCCGGCAATGCCTCCGGTGGCGCCGGCGCCGGCGCGTCCGCGTGCTGCTACTACTCCCTGCTCGGCATCCGGAAGAACGCGTCCGCCACCGACGTGCGCGCCGCCTACCGGAGGCTCGCCATGAAGTGGCACCCGGACCGGTGCGTGAGCGACCCCGGCGAGGCCAATCGGCGGTTCCAGCGGATCCAAGAGGCGTACTCCGTTCTGTCCGACAAGGGGAAGCGAGCCATGTACGACGCCGGGCTGTTCGATCCCCTCGACGACGACGACCAGGATTTCTCCGA  TTTCATGCAGGAGATGCTGGTGATGATGGA TAACGTGAAAAACGAGAA G CCGGACACACTCGAGGACCTGCAG AAGATGCTGCAAGACATCGTCAGCGGCGACGGCGGAAGCCGCGG CGGCGGCGTCGGTGGCCGCGTGCCGTCGGACGGCACACGGAGGACGCGCGTCGCGCCCTACCCGGCGCAGTCGCG CAGGTGACCGGCGCG CCGGTGTACGAGACGTGCACACGCCTCTAAGTGATG AAAAGAGAGACAAGCAGAAG AAGAGAGGAAGCAAACGGGAAAGAAAAACCAATAAAATTTGGCAGAATTTGTTTCCCTTTTTTTTAGGTCATCAGATGATTGACTCCGT]
[+] EMBL CF325678             [                                                                                    GCCGCCCCCGCCACCGCACCCCCATGGACGCCTCCGCCGGATCCGGCAATGCCTCCGGTGGCGCCGGCGCCGGCGCGTCCGCGTGCTGCTACTACTCCCTGCTCGGCATCCGGAAGAACGCGTCCGCCACCGACGTGCGCGCCGCCTACCGGAGGCTCGCCATGAAGTGGCACCCGGACCGGTGCGTGAGCGACCCCGGCGAGGCCAATCGGCGGTTCCAGCGGATCCAAGAGGCGTACTCCGTTCTGTCCGACAAGGGGAAGCGAGCCATGTACGACGCCGGGCTGTTCGATCCCCTCGACGACGACGACCAGGATTTCTCCGA  TTTCATGCAGGAGATGCTGGTGATGATGGA TAACGTGAAAAACGAGAA G CCGGACACACTCGAGGACCTGCAG AAGATGCTGCAAGACATCGTCAGCGGCGACGGCGGAAGCCGCGG CGGCGGCGTCGGTGGCCGCGTGCCGTCGGACGGCACACGGAGGACGCGCGTCGCGCCCTACCC                                                                                                                                                                                ]
[+] EMBL BM037870             [                                                                                                                                                                                                                                                                                                                                                                                                                     CCGAATTTTCATGCAGGAGATGCTGGTGATGATGGANTAACGTGANATACGAGAATGCCCGGACACACTCGAGGACCTGCAGAAAGATGCTGCAA ACATCGTCAGCGGCGACGGCGGAAGCCGCGGCCGGCGGCGTCGGTGGCCGCGTGCCGTCGGACGGCACACGGAGGACGCGCGTCGCGCCCTACCCGGCGCAGTCGCG CAGGTGACCGGCGCG CCGGTGTACGAGACGTGCACACGCCTCTAAGTGATG AAAAGAGAGACAAGCAGAAG AAGAGAGGAAGCAAACGGGAAAGAAAAACCAATAAAATTTGGCAGAATTTGTTTCCCTTTTTTTTAGGTCATCAGATGATTGACTCC  ]
[+] EMBL BM038203             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 gtGCCGCGT CCGTCGGTCGGCACACGGAGGACGCGCTTCGCGCCCTACCCGGCGCAGTCGCGNCAGGTGACCGGCGCGCCCGGTGTACGAGACGTGCACACGCCTCTAAGTGATGTAAAAGAGAGACCANCCGAAGTAAGAGAGGAAGCCAACGGGAAAGAAAAACCCATTAAATTTGGCAGAATNTGTTTCCCTTTTTTTTAGGTCATCAGATGATTGACTCCGT]




>consensus_11204#1
TCGGCTTTGTTGGCCTACTGGAATTCGATGCAGCCGCGGTAGCAATTCGCATCGCCCCGC
CCTCCTCGCCGCGCGGATTCGCTCGCCGCCCCCGCCACCGCACCCCCATGGACGCCTCCG
CCGGATCCGGCAATGCCTCCGGTGGCGCCGGCGCCGGCGCGTCCGCGTGCTGCTACTACT
CCCTGCTCGGCATCCGGAAGAACGCGTCCGCCACCGACGTGCGCGCCGCCTACCGGAGGC
TCGCCATGAAGTGGCACCCGGACCGGTGCGTGAGCGACCCCGGCGAGGCCAATCGGCGGT
TCCAGCGGATCCAAGAGGCGTACTCCGTTCTGTCCGACAAGGGGAAGCGAGCCATGTACG
ACGCCGGGCTGTTCGATCCCCTCGACGACGACGACCAGGATTTCTCCGATTTCATGCAGG
AGATGCTGGTGATGATGGATAACGTGAAAAACGAGAAGCCGGACACACTCGAGGACCTGC
AGAAGATGCTGCAAGACATCGTCAGCGGCGACGGCGGAAGCCGCGGCGGCGGCGTCGGTG
GCCGCGTGCCGTCGGACGGCACACGGAGGACGCGCGTCGCGCCCTACCCGGCGCAGTCGC
GCAGGTGACCGGCGCGCCGGTGTACGAGACGTGCACACGCCTCTAAGTGATGAAAAGAGA
GACAAGCAGAAGAAGAGAGGAAGCAAACGGGAAAGAAAAACCAATAAAATTTGGCAGAAT
TTGTTTCCCTTTTTTTTAGGTCATCAGATGATTGACTCCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11204#0      ATATTTTCCCACGCATCCGTCTCCTCCTCGCGGAATAATAACCTTTTTTTTTCTTTTTCC 60
consensus_11204#1      ------------------------------------------------------------
                                                                                   

consensus_11204#0      AAGCGCCCTTCAAACCCATCTCCTCTCCCCTCTCCCTCCC-AATTCGATGCAGCCGCGGT 119
consensus_11204#1      --------------------TCGGCTTTGTTGGCCTACTGGAATTCGATGCAGCCGCGGT 40
                                           **  **    *  **  *   *******************

consensus_11204#0      AGCAATTCGCATCGCCCCGCCCTCCTCGCCGCGCGGATTCGCTCGCCGCCCCCGCCACCG 179
consensus_11204#1      AGCAATTCGCATCGCCCCGCCCTCCTCGCCGCGCGGATTCGCTCGCCGCCCCCGCCACCG 100
                       ************************************************************

consensus_11204#0      CACCCCCATGGACGCCTCCGCCGGATCCGGCAATGCCTCCGGTGGCGCCGGCGCCGGCGC 239
consensus_11204#1      CACCCCCATGGACGCCTCCGCCGGATCCGGCAATGCCTCCGGTGGCGCCGGCGCCGGCGC 160
                       ************************************************************

consensus_11204#0      GTCCGCGTGCTGCTACTACTCCCTGCTCGGCATCCGGAAGAACGCGTCCGCCACCGACGT 299
consensus_11204#1      GTCCGCGTGCTGCTACTACTCCCTGCTCGGCATCCGGAAGAACGCGTCCGCCACCGACGT 220
                       ************************************************************

consensus_11204#0      GCGCGCCGCCTACCGGAGGCTCGCCATGAAGTGGCACCCGGACCGGTGCGTGAGCGACCC 359
consensus_11204#1      GCGCGCCGCCTACCGGAGGCTCGCCATGAAGTGGCACCCGGACCGGTGCGTGAGCGACCC 280
                       ************************************************************

consensus_11204#0      CGGCGAGGCCAATCGGCGGTTCCAGCGGATCCAAGAGGCGTACTCCGTTCTGTCCGACAA 419
consensus_11204#1      CGGCGAGGCCAATCGGCGGTTCCAGCGGATCCAAGAGGCGTACTCCGTTCTGTCCGACAA 340
                       ************************************************************

consensus_11204#0      GGGGAAGCGAGCCATGTACGACGCCGGGCTGTTCGATCCCCTCGACGACGACGACCAGGA 479
consensus_11204#1      GGGGAAGCGAGCCATGTACGACGCCGGGCTGTTCGATCCCCTCGACGACGACGACCAGGA 400
                       ************************************************************

consensus_11204#0      TTTCTCCGATTTCATGCAGGAGATGCTGGTGATGATGGATAACGTGAAAAACGAGAAGCC 539
consensus_11204#1      TTTCTCCGATTTCATGCAGGAGATGCTGGTGATGATGGATAACGTGAAAAACGAGAAGCC 460
                       ************************************************************

consensus_11204#0      GGACACACTCGAGGACCTGCAGAAGATGCTGCAAGACATCGTCAGCGGCGACGGCGGAAG 599
consensus_11204#1      GGACACACTCGAGGACCTGCAGAAGATGCTGCAAGACATCGTCAGCGGCGACGGCGGAAG 520
                       ************************************************************

consensus_11204#0      CCGCGGCGGCGGCGTCGGTGGCCGCGTGCCGTCGGACGGCACACGGAGGACGCGCGTCGC 659
consensus_11204#1      CCGCGGCGGCGGCGTCGGTGGCCGCGTGCCGTCGGACGGCACACGGAGGACGCGCGTCGC 580
                       ************************************************************

consensus_11204#0      GCCCTACCCGGCGCAGTCGCGCAGGTGACCGGCGCGCCGGTGTACGAGACGTGCACACGC 719
consensus_11204#1      GCCCTACCCGGCGCAGTCGCGCAGGTGACCGGCGCGCCGGTGTACGAGACGTGCACACGC 640
                       ************************************************************

consensus_11204#0      CTCTAAGTGATGAAAAGAGAGACAAGCAGAAGAAGAGAGGAAGCAAACGGGAAAGAAAAA 779
consensus_11204#1      CTCTAAGTGATGAAAAGAGAGACAAGCAGAAGAAGAGAGGAAGCAAACGGGAAAGAAAAA 700
                       ************************************************************

consensus_11204#0      CCAATAAAATTTGGCAGAATTTGTTTCCCTTTTTTTTAGGTCATCAGATGATTGACTCCG 839
consensus_11204#1      CCAATAAAATTTGGCAGAATTTGTTTCCCTTTTTTTTAGGTCATCAGATGATTGACTCCG 760
                       ************************************************************

consensus_11204#0      T 840
consensus_11204#1      T 761
                       *