cluster # 11205

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Oryza sativa
cluster # 11205 cluster # 11205 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11205#0 length = 829 sequences # 7

consensus_11205#1 length = 562 sequences # 1

consensusID : consensus_11205#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 829
fasta sequence

                              [AAGGGATGGCGGCGGCGGCGGCCGGCGGCGGGAGGGGCGGCGGGGCGCAGGCCGCGGTGGCGGAGCAGATAGCGCAGGCGGTGCAGTCCACGTCCAACCTCCTCCAGCTCATGGAGGAGTCCTCCCCGGCCCAGGCTCACCTGGCAAAACTTCCCAAGAAACTCTTGGCAAAAGCATCTCTTGCAAAGAACACAGGGCAGGTCCTGCATCAACTACCTAGTGTAATTTCTTCCTTGGATGCTTATATGGACGCTAGTTTGCAAAGTGCTTCTCAAATTAAGACTGTTACACAGCTCTTGTCAAACATGGAGAATAACCAGCTGAGATCTATCCTGCCTGCCTCTCAGTTAGAGAAAGCACAGAAGAAAACTGAGACTGGAGAA-CTCAGGATTGAATGATAAGTTTACCAATAGGATATAATA-ACCAATCTGTGTTCTCCTAGTAAAGGTACCTTTGCCATCTTCTACTGACGAACAGGAAAAACTGAAGCCTTACAAATGGTTCAGGTGTTGGCTCTGCTCATGGCAAGTGGACTTGCTCCGTTGCTCATAACCGGTGTTTGAAGACCTTGCTTGATTTGGATGGCTGCGTTTCTATTATGTTGGCTAATATATTTCTGGATGGCTTGAGCACATCAAATATGTTGTTCCATCTGGCTCTGTAATCCCCCTACCCTAGTGCTGGCTGCAAATTCAGTCCATTTTTGTTGTTTTCAGCACAAATATATATAGAAAGGAACCGAAAACAAGATTCAACACTCGTGTAACCTTTGGTTGTGTCCACTTATGAATTTGTGGATATAGAGACTGAATTTCTGTCAATAAAAAGA]

[+] EMBL CF325662             [AAGGGATGGCGGCGGCGGCGGCCGGCGGCGGGAGGGGCGGCGGGGCGCACGCCGCGGTGGCGGAGCAGATAGCGCAGGCGGTGCAGTCCACGTCCAACCTCCTCCAGCTCATGGAGGAGTCCTCCCCGGCCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CB684884             [    GATGGCTGCGGCGGCGGCCGGCGGCGGGAGGGGCGGCGGGGCGCAGGCCGCGGTGGCGGAGCAGATAGCGCAGGCGGTGCAGTCCACGTCCAACCTCCTCCAGCTCATGGAGGAGTCCTCCCCGGCCCAGGCTCACCTGGCAAAACTTCCCAAGAAACTCTTGGCAAAAGCATCTCTTGCAAAGAACACAGGGCAGGTCCTGCATCAACTACCTAGTGTAATTTCTTCCTTGGATGCTTATATGGACGCTAGTTTGCAAAGTGCTTCTCAAATTAAGACTGTTACACAGCTCTTGTCAAACATGGAGAATAACCAGCTGAGATCTATCCTGCCTGCCTCTCGGTTAGAGAAAGCACAGAAGAAAACTGAGACTGGAGAA CTCAGGATTGAATGATAAGTTTACCAATAGGATATAATA ACCAATCTGTGTTCTCCTAGTAAAGGTACCTTTGCCATCTTCTACTGACGAACAGGAAAGACTGAAGCCTTACAAATGGTTCAGGTGTTGGCTCTGCTCATGGCAAGTGGACTTGCTCCGTTGCTCATAACCGGTGTTTGAAGACCTTGCTTGATTTGGATGGCTGCGTTTCTATTATGTTGGCTAATATATTTCTGGATGGCTTGAGCACATCAAATATGTTGTTCCATCTGGCTCTGTAATCCCCCTACCCTAGTGCTGGCTGCAAATTCAGTCCATTTTTGTTGTTTTCAGCACAAATATATATAGAAAGGAACCGAAAACAAGATTCAACACTCGTGTAACCTTTGGTTGTGTCCACTTATGAATTTGTGGATATAGAGACTG                    ]
[+] EMBL CB633536             [                            CGGGAGGTGCGGCGGGGCGCAGGCCGCGGTGGCGGAGCAGATAGCGCAGGCGGTGCAGTCCACGTCCAACCTCCTCCAGCTCATGGAGGAGTCCTCCCCGGCCCAGGCTCACCTGGCAAAACTTCCCAAGAAACTCTTGGCAAAAGCATCTCTTGCAAAGAACACAGGGCAGGTCCTGCATCAACTACCTAGTGTAATTTCTTCCTTGGATGCTTATATGGACGCTAGTTTGCAAAGTGCTTCTCAAATTAAGACTGTTACACAGCTCTTGTCAAACATGGAGAATAACCAGCTGAGATCTATCCTGCCTGCCTCTCAGTTAGAGAAAGCACAGAAGAAAACTGAGACTGGAGAA CTCAGGATTGAATGATAAGTTTACCAATAGGATATAATA ACCAATCTGTGTTCTCCTAGTAAAGGTACCTTTGCCATCTTCTACTGACGAACAGGAAAAACTGAAGCCTTACAAATGGTTCAGGTGTTGGCTCTGCTCATGGCAAGTGGACTTGCTCCGTTGCTCATAACCGGTGTTTGAAGACCTTGCTTGATTTGGATGGCTGCGTTTCTATTATGTTGGCTAATATATTTCTGGATGGCTTGAGCACATCAAATATGTTGTTCCATCTGGCTCTGTAATCCCCCTACCCTAGTGCTGGCTGCAAATTCAGTCCATTTTTGTTGTTTTCAGCACAAATATATATAGAAAGGAACCGAAAACAAGATTCAACACTCGTGTAACCTTTGGTTGT                                                    ]
[-] EMBL CB684885             [                                             CGCAGNCCGCGGTGGCGGAGCAGATAGCGCAGGCGGTGCAGTCCACGTCCAACCTCCTCCAGCTCATGGAGGAGTCCTCCCCGGCCCAGGCTCACCTGGCAAAACTTCCCAAGAAACTCTTGGCAAAAGCATCTCTTGCAAAGAACACAGGGCAGGTCCTGCATCAACTACCTAGTGTAATTTCTTCCTTGGATGCTTATATGGACGCTAGTTTGCAAAGTGCTTCTCAAATTAAGACTGTTACACAGCTCTTGTCAAACATGGAGAATAACCAGCTGAGATCTATCCTGCCTGCCTCTCGGTTAGAGAAAGCACAGAAGAAAACTGAGACTGGAGAA CTCAGGATTGAATGATAAGTTTACCAATAGGATATAATA ACCAATCTGTGTTCTCCTAGTAAAGGTACCTTTGCCATCTTCTACTGACGAACAGGAAAGACTGAAGCCTTACAAATGGTTCAGGTGTTGGCTCTGCTCATGGCAAGTGGACTTGCTCCGTTGCTCATAACCGGTGTTTGAAGACCTTGCTTGATTTGGATGGCTGCGTTTCTATTATGTTGGCTAATATATTTCTGGATGGCTTGAGCACATCAAATATGTTGTTCCATCTGGCTCTGTAATCCCCCTACCCTAGTGCTGGCTGCAAATTCAGTCCATTTTTGTTGTTTTCAGCACAAATATATATAGAAAGGAACCGAAAACAAGATTCAACACTCGTGTAACCTTTGGTTGTGTCCACTTAGGAATTTGTGGATATAGAGACTGAATTTCTGTCAATAAAAAGA]
[+] EMBL AA754462             [                                                                      gagaacnGCGGTGCAGTCCACCTCCAACCTCNTCCAGCTCNTGGAGGAGTCCTCCCCGGCCCAGGCTCACCTGGCAAAACTTCCCAAGAAACTCTTGGCAAAAGCATCTCTTGCAAAGAACACAGGGCA GTCCTGCATCAACTACCTAGTGTAATTTCTTCCTTGGATGCTTATATGGACGCTAGTTTGCAAAGTGCTTCTCAAATTAAGACTGTTACACAGCTCTTGTCAAACATGGAGAATAACCAGCTGAGATCTATCCTGCCTGCCTCTCAGTTAGAGAAAGCACAGAAGAAAACTGAGACTGGAGAA CTCNNGATTGAATGATAAGTTTACCAATAGGATATAATA ACCAATCTGTGTTCTCCTAGTAAAGGTACCTTTGCCATCTTCTACTGACGAACAGGAAAAACTGAAGCCTTACAAATGGTTCAGGTGTTGGCTCTGCTCATGGCAAGTGGACTTGCTCCGTTGCTCATAACCGGTGTTTGAAGAACTTGCTTGATTTGGATGGCTGCGTTTCTATTATGTTGGCTAATATATTTCTGGATGGCTTGAGCACATCAAATATGTTGTTCCATCTGGCTCTGTTAT CCCCTA CCTANTCCTGGCTGCAAATTCA TCCATTTTTGTTGTTTTCNGCCCCAATNTNTTTTGAAAGGAA CGAAAACAANA TC ACCCTCCTGTAnctt                                                            ]
[-] EMBL CB633537             [                                                                                                                                                       TCCCAAGAAACTCTTGGCAAAAGCATCTCTTGCAAAGAACACAGGGCAGGTCCTGCATCAACTACCTAGTGTAATTTCTTCCTTGGATGCTTATATGGACGCTAGTTTGCAAAGTGCTTCTCAAATTAAGACTGTTACACAGCTCTTGTCAAACATGGAGAATAACCAGCTGAGATCTATCCTGCCTGCCTCTCAGTTAGAGAAAGCACAGAAGAAAACTGAGACTGGAGAA CTCAGGATTGAATGATAAGTTTACCAATAGGATATAATA ACCAATCTGTGTTCTCCTAGTAAAGGTACCTTTGCCATAAAAAAATGACGAACAGGAAAAACTGAAGCCTTACAAATGGTTCAGGTGTTGGCTCTGCTCATGGCAAGTGGACTTGCTCCGTTGCTCATAACCGGTGTTTGAAGACCTTGCTTGATTTGGATGGCTGCGTTTCTATTATGTTGGCTAATATATTTCTGGATGGCTTGAGCACATCAAATATGTTGTTCCATCTGGCTCTGTAATCCCCCTACCCTAGTGCTGGAAGAAAATTCAGTCCTTTTTTGAGGATTTCAGCACAAATATATATAGAAAGGAACCGAAAACAAGATTCAACACTCGTGTAACCTTTGGTAAAGTCCACTTATGAATTTGTGGATA                             ]
[+] EMBL BI797663             [                                                                                                                                                                                                                                                                                                                                                     TCTCAGTTAGAGAAAGCACAGAAGAAAACTGAGACTGGAGAAGCTCAGGATTGAATGATAAGTTTACC ATAGGATATAATAGACCAATCTGTGTTCTCCTAGTAAAGGTACCTTTGCCATCTTCTACTGACGAACAGGAAAAACTGAAGCCTTACAAATGGTTCAGGTGTTGGCTCTGCTCATGGCAAGTGGACTTGCTCCGTTGCTCATAACCGGTGTTTGAAGACCTTGCTTGATTTGGATGGCTGCGTTTCTATTATGTTGGCTAATATATTTCTGGATGGCTTGAGCACATCAAATATGTTGTTCCATCTGGCTCTGTAATCCCCCTACCCTAGTGCTGGCT CAAATTCAGTCCATTTTTGTTGTTTTCAGCAC AATATATATAGAAAGGAACCGAAAACAAGATTCAAaaaaa                                                                     ]




>consensus_11205#0
AAGGGATGGCGGCGGCGGCGGCCGGCGGCGGGAGGGGCGGCGGGGCGCAGGCCGCGGTGG
CGGAGCAGATAGCGCAGGCGGTGCAGTCCACGTCCAACCTCCTCCAGCTCATGGAGGAGT
CCTCCCCGGCCCAGGCTCACCTGGCAAAACTTCCCAAGAAACTCTTGGCAAAAGCATCTC
TTGCAAAGAACACAGGGCAGGTCCTGCATCAACTACCTAGTGTAATTTCTTCCTTGGATG
CTTATATGGACGCTAGTTTGCAAAGTGCTTCTCAAATTAAGACTGTTACACAGCTCTTGT
CAAACATGGAGAATAACCAGCTGAGATCTATCCTGCCTGCCTCTCAGTTAGAGAAAGCAC
AGAAGAAAACTGAGACTGGAGAACTCAGGATTGAATGATAAGTTTACCAATAGGATATAA
TAACCAATCTGTGTTCTCCTAGTAAAGGTACCTTTGCCATCTTCTACTGACGAACAGGAA
AAACTGAAGCCTTACAAATGGTTCAGGTGTTGGCTCTGCTCATGGCAAGTGGACTTGCTC
CGTTGCTCATAACCGGTGTTTGAAGACCTTGCTTGATTTGGATGGCTGCGTTTCTATTAT
GTTGGCTAATATATTTCTGGATGGCTTGAGCACATCAAATATGTTGTTCCATCTGGCTCT
GTAATCCCCCTACCCTAGTGCTGGCTGCAAATTCAGTCCATTTTTGTTGTTTTCAGCACA
AATATATATAGAAAGGAACCGAAAACAAGATTCAACACTCGTGTAACCTTTGGTTGTGTC
CACTTATGAATTTGTGGATATAGAGACTGAATTTCTGTCAATAAAAAGA

consensusID : consensus_11205#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 562
fasta sequence

                              [CAGTATTTNCCGGGGGAAGGGAGTGTCAANGTTTAAAAANATTAAAAGTTTNTNAAAAANGGGGGAAAACCAGNGGAATTTTCNNCCCCCTTTTTGGGAAAGGGGAAACAANNGAGGAAATGGGGATGGGGGAATNGGGGTTGATGAAAGTTACCNAATGGGGAANAANAACCCAATTNGTGTTTTNCTAGTAAGGAACCTTTGCNNTTTTTTTAACNGGANGAACAGGGAAAGACGGAACCTAACAAATGGTTCAGGTGTGGGTTTGCTCATGGCAAGTGGATTGCTCCGTTGCTCATAACCGGTGTTTGGAAGACCTTGCTTGATTTGGATGGCTGCGTTTCTATTATGTTGGCTAATATATTTCTGGATGGCTTGAGCACATCAAATATGTTGTTCCATCTGGCTCTGTAATCCCCCTACCCTAGTGCTGGCTGCAAATTCAGTCCATTTTTGTTGTTTTCAGCACAAATATATATAGAAAGGAACCGAAAACAAGATTCAACACTCGTGTAACCTTTGGTTGTGTCCACTTATGAATTTGTGGATATAGAGACTGAAT]

[-] EMBL BE229039             [CAGTATTTNCCGGGGGAAGGGAGTGTCAANGTTTAAAAANATTAAAAGTTTNTNAAAAANGGGGGAAAACCAGNGGAATTTTCNNCCCCCTTTTTGGGAAAGGGGAAACAANNGAGGAAATGGGGATGGGGGAATNGGGGTTGATGAAAGTTACCNAATGGGGAANAANAACCCAATTNGTGTTTTNCTAGTAAGGAACCTTTGCNNTTTTTTTAACNGGANGAACAGGGAAAGACGGAACCTAACAAATGGTTCAGGTGTGGGTTTGCTCATGGCAAGTGGATTGCTCCGTTGCTCATAACCGGTGTTTGGAAGACCTTGCTTGATTTGGATGGCTGCGTTTCTATTATGTTGGCTAATATATTTCTGGATGGCTTGAGCACATCAAATATGTTGTTCCATCTGGCTCTGTAATCCCCCTACCCTAGTGCTGGCTGCAAATTCAGTCCATTTTTGTTGTTTTCAGCACAAATATATATAGAAAGGAACCGAAAACAAGATTCAACACTCGTGTAACCTTTGGTTGTGTCCACTTATGAATTTGTGGATATAGAGACTGAAT]




>consensus_11205#1
CAGTATTTNCCGGGGGAAGGGAGTGTCAANGTTTAAAAANATTAAAAGTTTNTNAAAAAN
GGGGGAAAACCAGNGGAATTTTCNNCCCCCTTTTTGGGAAAGGGGAAACAANNGAGGAAA
TGGGGATGGGGGAATNGGGGTTGATGAAAGTTACCNAATGGGGAANAANAACCCAATTNG
TGTTTTNCTAGTAAGGAACCTTTGCNNTTTTTTTAACNGGANGAACAGGGAAAGACGGAA
CCTAACAAATGGTTCAGGTGTGGGTTTGCTCATGGCAAGTGGATTGCTCCGTTGCTCATA
ACCGGTGTTTGGAAGACCTTGCTTGATTTGGATGGCTGCGTTTCTATTATGTTGGCTAAT
ATATTTCTGGATGGCTTGAGCACATCAAATATGTTGTTCCATCTGGCTCTGTAATCCCCC
TACCCTAGTGCTGGCTGCAAATTCAGTCCATTTTTGTTGTTTTCAGCACAAATATATATA
GAAAGGAACCGAAAACAAGATTCAACACTCGTGTAACCTTTGGTTGTGTCCACTTATGAA
TTTGTGGATATAGAGACTGAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11205#0      AAGGGATGGCGGCGGCGGCGGCCGGCGGCGGGAGGGGCGGCGGGGCGCAGGCCGCGGTGG 60
consensus_11205#1      ------------------------------------------------------------
                                                                                   

consensus_11205#0      CGGAGCAGATAGCGCAGGCGGTGCAGTCCACGTCCAACCTCCTCCAGCTCATGGAGGAGT 120
consensus_11205#1      ------------------------------------------------------------
                                                                                   

consensus_11205#0      CCTCCCCGGCCCAGGCTCACCTGGCAAAACTTCCCAAGAAACTCTTGGCAAAAGCATCTC 180
consensus_11205#1      ------------------------------------------------------------
                                                                                   

consensus_11205#0      TTGCAAAGAACACAGGGCAGGTCCTGCATCAACTACCTAGTGTAATTTCTTCCTTGGATG 240
consensus_11205#1      ------------------------------------------------------------
                                                                                   

consensus_11205#0      CTTATATGGACGCTAGTTTGCAAAGTGCTTCTCAAA--TTAAGACTGTTACACAGCTCTT 298
consensus_11205#1      ------CAGTATTTNCCGGGGGAAGGGAGTGTCAANGTTTAAAAANATTAAAAG---TTT 51
                               *    *     *  *** *  * ****   **** *   *** *      **

consensus_11205#0      GTCAAACATGGAGAATAACCAGCTGAGATCTATCCTGCCTGCCTCTCAGTTAGAGAAAGC 358
consensus_11205#1      NTNAAAAANGGGGGAAAACCAGNGGAATTTTCNNCCCCCT--TTTTGGGAAAGGGGAAAC 109
                        * *** * ** * * ******  **  * *   *  ***   * *  *  ** * ** *

consensus_11205#0      ACAGAAGAAAACTGAGACTGGAGAACTCAGGATTGAATGATAAGTTTACCAATAGGATAT 418
consensus_11205#1      AANNGAGGAAATGGGGA-TGGGGGAATNGGGGTTGA-TGA-AAGTTACCNAATGGGGAAN 166
                       *    ** ***  * ** *** * * *  ** **** *** *****  * *** **  * 

consensus_11205#0      AATAACC-AATCTGTGTTCTCCTAGTAAAGGTACCTTTGCCATCTTCT--ACTG-ACGAA 474
consensus_11205#1      AANAACCCAATTNGTGTTTTNCTAGTAAGGA-ACCTTTGCNNTTTTTTTAACNGGANGAA 225
                       ** **** ***  ***** * ******* *  ********  * ** *  ** * * ***

consensus_11205#0      CAGGAAAAACTGAAGCCTTACAAATGGTTCAGGTGTTGGCTCTGCTCATGGCAAGTGGAC 534
consensus_11205#1      CAGGGAAAGACGGAACCTAACAAATGGTTCAGGTGTGGGTT-TGCTCATGGCAAGTGGA- 283
                       **** ***   * * *** ***************** ** * ***************** 

consensus_11205#0      TTGCTCCGTTGCTCATAACCGGTGTTTG-AAGACCTTGCTTGATTTGGATGGCTGCGTTT 593
consensus_11205#1      TTGCTCCGTTGCTCATAACCGGTGTTTGGAAGACCTTGCTTGATTTGGATGGCTGCGTTT 343
                       **************************** *******************************

consensus_11205#0      CTATTATGTTGGCTAATATATTTCTGGATGGCTTGAGCACATCAAATATGTTGTTCCATC 653
consensus_11205#1      CTATTATGTTGGCTAATATATTTCTGGATGGCTTGAGCACATCAAATATGTTGTTCCATC 403
                       ************************************************************

consensus_11205#0      TGGCTCTGTAATCCCCCTACCCTAGTGCTGGCTGCAAATTCAGTCCATTTTTGTTGTTTT 713
consensus_11205#1      TGGCTCTGTAATCCCCCTACCCTAGTGCTGGCTGCAAATTCAGTCCATTTTTGTTGTTTT 463
                       ************************************************************

consensus_11205#0      CAGCACAAATATATATAGAAAGGAACCGAAAACAAGATTCAACACTCGTGTAACCTTTGG 773
consensus_11205#1      CAGCACAAATATATATAGAAAGGAACCGAAAACAAGATTCAACACTCGTGTAACCTTTGG 523
                       ************************************************************

consensus_11205#0      TTGTGTCCACTTATGAATTTGTGGATATAGAGACTGAATTTCTGTCAATAAAAAGA 829
consensus_11205#1      TTGTGTCCACTTATGAATTTGTGGATATAGAGACTGAAT----------------- 562
                       ***************************************