cluster # 11208

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 11208 cluster # 11208 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11208#0 length = 2230 sequences # 6

consensus_11208#1 length = 363 sequences # 1
consensus_11208#2 length = 209 sequences # 1

consensusID : consensus_11208#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 2230
fasta sequence

                              [CCAAAATTGCCAAAATCACCCTCCAATTCCTTTCCCCTCCTCCCTCCCCTCTGCCGCCATGGCCGCCTCCTCCTCCTCCT-CCCCCCTTGACCCACACCACCAATCGCCCCAAATCCATGAGACTCCCCGCGCCACAATCCAGCCCTGCCGCACGAGGATGTCCCAGTCCGACGTTGTCTACAGCTGCGGATCTTGTGGATACCCTCTGAACCTTTCATCTTCTAACCGAAGCACATCTGACGTAGGATCCTCATACCAAAAGTCTGTGAAGAAAGGTCTGATTTCATTCATTACTGTTGATCTGAGCCGATTTACTCAGGTAGACGAGATATCTTGCTTTCCCCTCACCTGGCGTAGCTATCGGCCAAAAACTAAGCTTCTCTGCCGAAAGTGTGGGGCATCTATTGGCTATGGGTATGGTGAACCAGCTGTTCTGTGCAGCTTTGATCCAGCCAGTTCATCATCTAGTACATCCCAAAAGTATTTAATAAAAATCCAGGCTCTCCAGCCTTCGGATAGTACTCAGTAGTCTGTCAACTTCAGCCAAAATTTGGAAAGAGAGGAAATGGATGACAACGTGGAAAACTATATCAATTTCCTATCAGATGATTGCTTGATTTGTATATTTAACAAGCTTGAAAGTGAATCGGACAGGAATGCTTTTGGCTTAACTTGTAAGAATTGGTTTAAGGTTCGAAACATTGCCCGGAAATCAATAATTTTCCATTGTTCTTTTAACCCTAAAGTATATAAGGAGCACGCCAATTGCCTTTCAAAGTTATTGGCCCGCTCACCTTATCTTAACTTGGTCTCCCTCGCTGGGCTTACAGAACTACCTGACACGGCTTTAAATCAGCTGAGAATTTCTGGAGCATCATTGCAGTCCCTTTCTTTCTACTGCTGCTCTGGTATTACGGATGATGGTTTAGAGGTGGTCTCAATCGGATGCCCTAATTTGGTGAGTCTTGAACTCTACCGCTGCTTTAATATTACAGATCATGGTTTGGAAAATCTTTGCAAGGGCTGCCATGCTTTGAAGAGTCTTAACCTGGGTTACTGTGTAGCCATTTCAGATCAAGGGATTGCTGCAATCTTTAGGAATTGCCCGAATATTTCCACAATTATCATAGCATATTGCAGAGGTTTATCCGGTGTTGGATTCAGAGGTTGTCCAGGTACACTTTCTCATCTAGAAGCTGAGTCGTGCATGCTTTCTCCAGATGGTTTGTTGGATGTAGTGAGTGGTGGTGGACTGGAGTATCTAAATTTGTACAATTTGAAAAGCCCAACTGGACTTGATGGCCTGGACAGAGTTGGTTATGCGAGAAGTCTTCGGTTTTTAAACCTCAGGATGTGCCGTTACCTTACCGATGATTCTGTGACGGCAATAGCTAGCGGGTGTCCATTGATTGAGGAATGGAGCCTCGCTGTCTGCCATGGAGTTCGCTTGCCTGGATGGTCTGCGATTGGATTGCTCTGCAACAAGCTGAGAATCTTGCATGTTAACCGTTGCCGAAACATTTGTGACCAAGGTTTGCAGGCTCTAGGGGATGGCTGTGTATGCCTTCAAGTTCTGCATATCCATGGATGTGGCAAGATCACTAATAATGGTCTGGCATCATTTAGCATTGCTAGGCCCAATGTGAAACAAAGGGCTGATGAAGTCATGTGCATTGGCCCCTCCA-TTGAGGATTTATTCCGATTGCAATGATCAGAAACTC-AGAAAGTTTCAGCTAAAGTTTGGGGTTGACAAGATTCAAGCCATTGCCACCAGCATTGTCATTACAAGTCACAAGATATTTGGTTCTGTAACCATTATGCCCTTCTAATTTGCTCAAAAGTGCATACTTATTTATTATAAACAGGA-CCACAAATATACAAATGGATTGCGAGGAGTCAAGTCCATTTGTTCCTGTGGTTATTTGCAAGTTCTGAGTTTATTGGGTGATA-CAGAAAATGGTTGTAGAAGGTTGTTTTTCGTACAATTTGATAGCTAGTTTAAACTTGTAAATTGACATGTTTTAAAACCATCGAAAATTGAATTGGATGGGTTGGTTGTACTACAGCGGTTGAACCGGTGTTTAAACTTTCCGATGGATTGTATTAGGTTAACTCGAGAAGTTCAACTATCAGAATGCCACCATAGCTGAAAACAATTTTTAAGTTTTGATGAAATGTAAACAAAGAAAATCCTGAACTTGTTGACCAATCGAAGTTGTTGACGAATGAT]

[+] EMBL AK100924             [CCAAAATTGCCAAAATCACCCTCCAATTCCTTTCCCCTCCTCCCTCCCCTCTGCCGCCATGGCCGCCTCCTCCTCCTCCT CCCCCCTTGACCCACACCACCAATCGCCCCAAATCCATGAGACTCCCCGCGCCACAATCCAGCCCTGCCGCACGAGGATGTCCCAGTCCGACGTTGTCTACAGCTGCGGATCTTGTGGATACCCTCTGAACCTTTCATCTTCTAACCGAAGCACATCTGACGTAGGATCCTCATACCAAAAGTCTGTGAAGAAAGGTCTGATTTCATTCATTACTGTTGATCTGAGCCGATTTACTCAGGTAGACGAGATATCTTGCTTTCCCCTCACCTGGCGTAGCTATCGGCCAAAAACTAAGCTTCTCTGCCGAAAGTGTGGGGCATCTATTGGCTATGGGTATGGTGAACCAGCTGTTCTGTGCAGCTTTGATCCAGCCAGTTCATCATCTAGTACATCCCAAAAGTATTTAATAAAAATCCAGGCTCTCCAGCCTTCGGATAGTACTCAGTAGTCTGTCAACTTCAGCCAAAATTTGGAAAGAGAGGAAATGGATGACAACGTGGAAAACTATATCAATTTCCTATCAGATGATTGCTTGATTTGTATATTTAACAAGCTTGAAAGTGAATCGGACAGGAATGCTTTTGGCTTAACTTGTAAGAATTGGTTTAAGGTTCGAAACATTGCCCGGAAATCAATAATTTTCCATTGTTCTTTTAACCCTAAAGTATATAAGGAGCACGCCAATTGCCTTTCAAAGTTATTGGCCCGCTCACCTTATCTTAACTTGGTCTCCCTCGCTGGGCTTACAGAACTACCTGACACGGCTTTAAATCAGCTGAGAATTTCTGGAGCATCATTGCAGTCCCTTTCTTTCTACTGCTGCTCTGGTATTACGGATGATGGTTTAGAGGTGGTCTCAATCGGATGCCCTAATTTGGTGAGTCTTGAACTCTACCGCTGCTTTAATATTACAGATCATGGTTTGGAAAATCTTTGCAAGGGCTGCCATGCTTTGAAGAGTCTTAACCTGGGTTACTGTGTAGCCATTTCAGATCAAGGGATTGCTGCAATCTTTAGGAATTGCCCGAATATTTCCACAATTATCATAGCATATTGCAGAGGTTTATCCGGTGTTGGATTCAGAGGTTGTCCAGGTACACTTTCTCATCTAGAAGCTGAGTCGTGCATGCTTTCTCCAGATGGTTTGTTGGATGTAGTGAGTGGTGGTGGACTGGAGTATCTAAATTTGTACAATTTGAAAAGCCCAACTGGACTTGATGGCCTGGACAGAGTTGGTTATGCGAGAAGTCTTCGGTTTTTAAACCTCAGGATGTGCCGTTACCTTACCGATGATTCTGTGACGGCAATAGCTAGCGGGTGTCCATTGATTGAGGAATGGAGCCTCGCTGTCTGCCATGGAGTTCGCTTGCCTGGATGGTCTGCGATTGGATTGCTCTGCAACAAGCTGAGAATCTTGCATGTTAACCGTTGCCGAAACATTTGTGACCAAGGTTTGCAGGCTCTAGGGGATGGCTGTGTATGCCTTCAAGTTCTGCATATCCATGGATGTGGCAAGATCACTAATAATGGTCTGGCATCATTTAGCATTGCTAGGCCCAATGTGAAACAAAGGGCTGATGAAGTCATGTGCATTGGCCCCTCCA TTGAGGATTTATTCCGATTGCAATGATCAGAAACTC AGAAAGTTTCAGCTAAAGTTTGGGGTTGACAAGATTCAAGCCATTGCCACCAGCATTGTCATTACAAGTCACAAGATATTTGGTTCTGTAACCATTATGCCCTTCTAATTTGCTCAAAAGTGCATACTTATTTATTATAAACAGGA CCACAAATATACAAATGGATTGCGAGGAGTCAAGTCCATTTGTTCCTGTGGTTATTTGCAAGTTCTGAGTTTATTGGGTGATA CAGAAAATGGTTGTAGAAGGTTGTTTTTCGTACAATTTGATAGCTAGTTTAAACTTGTAAATTGACATGTTTTAAAACCATCGAAAATTGAATTGGATGGGTTGGTTGTACTACAGCGGTTGAACCGGTGTTTAAACTTTCCGATGGATTGTATTAGGTTAACTCGAGAAGTTCAACTATCAGAATGCCACCATAGCTGAAAACAATTTTTAAGTTTTGATGAAATGTAAACAAAGAAAATCCTGAACTTGTTGACCAATCGAAGTTGTTGACGAATGAT]
[+] EMBL AK100912             [CCAAAATTGCCAAAATCACCCTCCAATTCCTTTCCCCTCCTCCCTCCCCTCTGCCGCCATGGCCGCCTCCTCCTCCTCCT CCCCCCTTGACCCACACCACCAATCGCCCCAAATCCATGAGACTCCCCGCGCCACAATCCAGCCCTGCCGCACGAGGATGTCCCAGTCCGACGTTGTCTACAGCTGCGGATCTTGTGGATACCCTCTGAACCTTTCATCTTCTAACCGAAGCACATCTGACGTAGGATCCTCATACCAAAAGTCTGTGAAGAAAGGTCTGATTTCATTCATTACTGTTGATCTGAGCCGATTTACTCAGGTAGACGAGATATCTTGCTTTCCCCTCACCTGGCGTAGCTATCGGCCAAAAACTAAGCTTCTCTGCCGAAAGTGTGGGGCATCTATTGGCTATGGGTATGGTGAACCAGCTGTTCTGTGCAGCTTTGATCCAGCCAGTTCATCATCTAGTACATCCCAAAAGTATTTAATAAAAATCCAGGCTCTCCAGCCTTCGGATAGTACTCAGTAGTCTGTCAACTTCAGCCAAAATTTGGAAAGAGAGGAAATGGATGACAACGTGGAAAACTATATCAATTTCCTATCAGATGATTGCTTGATTTGTATATTTAACAAGCTTGAAAGTGAATCGGACAGGAATGCTTTTGGCTTAACTTGTAAGAATTGGTTTAAGGTTCGAAACATTGCCCGGAAATCAATAATTTTCCATTGTTCTTTTAACCCTAAAGTATATAAGGAGCACGCCAATTGCCTTTCAAAGTTATTGGCCCGCTCACCTTATCTTAACTTGGTCTCCCTCGCTGGGCTTACAGAACTACCTGACACGGCTTTAAATCAGCTGAGAATTTCTGGAGCATCATTGCAGTCCCTTTCTTTCTACTGCTGCTCTGGTATTACGGATGATGGTTTAGAGGTGGTCTCAATCGGATGCCCTAATTTGGTGAGTCTTGAACTCTACCGCTGCTTTAATATTACAGATCATGGTTTGGAAAATCTTTGCAAGGGCTGCCATGCTTTGAAGAGTCTTAACCTGGGTTACTGTGTAGCCATTTCAGATCAAGGGATTGCTGCAATCTTTAGGAATTGCCCGAATATTTCCACAATTATCATAGCATATTGCAGAGGTTTATCCGGTGTTGGATTCAGAGGTTGTCCAGGTACACTTTCTCATCTAGAAGCTGAGTCGTGCATGCTTTCTCCAGATGGTTTGTTGGATGTAGTGAGTGGTGGTGGACTGGAGTATCTAAATTTGTACAATTTGAAAAGCCCAACTGGACTTGATGGCCTGGACAGAGTTGGTTATGCGAGAAGTCTTCGGTTTTTAAACCTCAGGATGTGCCGTTACCTTACCGATGATTCTGTGACGGCAATAGCTAGCGGGTGTCCATTGATTGAGGAATGGAGCCTCGCTGTCTGCCATGGAGTTCGCTTGCCTGGATGGTCTGCGATTGGATTGCTCTGCAACAAGCTGAGAATCTTGCATGTTAACCGTTGCCGAAACATTTGTGACCAAGGTTTGCAGGCTCTAGGGGATGGCTGTGTATGCCTTCAAGTTCTGCATATCCATGGATGTGGCAAGATCACTAATAATGGTCTGGCATCATTTAGCATTGCTAGGCCCAATGTGAAACAAAGGGCTGATGAAGTCATGTGCATTGGCCCCTCCA TTGAGGATTTATTCCGATTGCAATGATCAGAAACTC AGAAAGTTTCAGCTAAAGTTTGGGGTTGACAAGATTCAAGCCATTGCCACCAGCATTGTCATTACAAGTCACAAGATATTTGGTTCTGTAACCATTATGCCCTTCTAATTTGCTCAAAAGTGCATACTTATTTATTATAAACAGGA CCACAAATATACAAATGGATTGCGAGGAGTCAAGTCCATTTGTTCCTGTGGTTATTTGCAAGTTCTGAGTTTATTGGGTGATA CAGAAAATGGTTGTAGAAGGTTGTTTTTCGTACAATTTGATAGCTAGTTTAAACTTGTAAATTGACATGTTTTAAAACCATCGAAAATTGAATTGGATGGGTTGGTTGTACTACAGCGGTTGAACCGGTGTTTAAACTTTCCGATGGATTGTATTAGGTTAACTCGAGAAGTTCAACTATCAGAATGCCACCATAGCTGAAAACAATTTTTAAGTTTTGATGAAATGTAAACAAAGAAAATCCTGAACTTGTTGACCAATCGAAGTTGTTGACGAATGAT]
[+] EMBL AK100855             [CCAAAATTGCCAAAATCACCCTCCAATTCCTTTCCCCTCCTCCCTCCCCTCTGCCGCCATGGCCGCCTCCTCCTCCTCCTCCCCCCCTTGACCCACACCACCAATCGCCCCAAATCCATGAGACTCCCCGCGCCACAATCCAGCCCTGCCGCACGAGGATGTCCCAGTCCGACGTTGTCTACAGCTGCGGATCTTGTGGATACCCTCTGAACCTTTCATCTTCTAACCGAAGCACATCTGACGTAGGATCCTCATACCAAAAGTCTGTGAAGAAAGGTCTGATTTCATTCATTACTGTTGATCTGAGCCGATTTACTCAGGTAGACGAGATATCTTGCTTTCCCCTCACCTGGCGTAGCTATCGGCCAAAAACTAAGCTTCTCTGCCGAAAGTGTGGGGCATCTATTGGCTATGGGTATGGTGAACCAGCTGTTCTGTGCAGCTTTGATCCAGCCAGTTCATCATCTAGTACATCCCAAAAGTATTTAATAAAAATCCAGGCTCTCCAGCCTTCGGATAGTACTCAGTAGTCTGTCAACTTCAGCCAAAATTTGGAAAGAGAGGAAATGGATGACAACGTGGAAAACTATATCAATTTCCTATCAGATGATTGCTTGATTTGTATATTTAACAAGCTTGAAAGTGAATCGGACAGGAATGCTTTTGGCTTAACTTGTAAGAATTGGTTTAAGGTTCGAAACATTGCCCGGAAATCAATAATTTTCCATTGTTCTTTTAACCCTAAAGTATATAAGGAGCACGCCAATTGCCTTTCAAAGTTATTGGCCCGCTCACCTTATCTTAACTTGGTCTCCCTCGCTGGGCTTACAGAACTACCTGACACGGCTTTAAATCAGCTGAGAATTTCTGGAGCATCATTGCAGTCCCTTTCTTTCTACTGCTGCTCTGGTATTACGGATGATGGTTTAGAGGTGGTCTCAATCGGATGCCCTAATTTGGTGAGTCTTGAACTCTACCGCTGCTTTAATATTACAGATCATGGTTTGGAAAATCTTTGCAAGGGCTGCCATGCTTTGAAGAGTCTTAACCTGGGTTACTGTGTAGCCATTTCAGATCAAGGGATTGCTGCAATCTTTAGGAATTGCCCGAATATTTCCACAATTATCATAGCATATTGCAGAGGTTTATCCGGTGTTGGATTCAGAGGTTGTCCAGGTACACTTTCTCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL OSS2085A             [                         ATTCCTTTCCCCTCCTCCCTCCCCTCTGCCGCCATGGCCGCCTCCTCCTCCTCCTCCCCCCCTTGACCCACACCACCAATCGCCCCAAATCCATGAGACTCCCCGCGCCACAATCCAGCCCTGCCGCACGAGGATGTCCCAGTCCGACGTTGTCTACAGCTGCGGATCTTGTGGATACCCTCTGAACCTTTCATCTTCTAACCGAAGCACATCTGACGTAGGATCCTCATACCAAAAGTCTGTGAAGAAAGGTCTGATTTCATTCATTACTGTTGATCTGAGCCGATTTACTCAGGTAGACGGGATATCTTGCTTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BM038433             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        gcCAAGATCACTAATAATGGTCTGGCATCATTTAGCATTGCTA GCCCAATGTGAAACAAAGGGCTGATGAAGTCATGTGCATTGCCCCCTCCACTTGAGGATTTATTCCGATTGC ATGATCAGAAACTCTAGAAAGTTTCAGCTAAAGTTTGGGGTTGACAAGATTCAA CCATT CCACCA CATTGTCATTACAAGTCACAAGATATTTGGTTCTGTAACCCTTAT CCCTTCTAATTTGCTCAAAAGTGCATACTTATTTATTATAAACAGGACCCACAAATATAC AATGGATTGCGAGGAGTCAAGTCCATTTGTTCCTGTGGTTATTT CAAGTTCTGAGTTTATTGGGTGATACCAGAAAATGGTTGTAGAA GTTGTTTTTCG NCCATTTGATAGCTAGTTTAAACTTGTAAATTGACATGTTTTAAAACCCTCGAAAATTGAATTGGATGGGTTGGTTGTACTAaaaaaaaaa                                                                                                                                                              ]
[+] EMBL BM419758             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AAGGGCTGATGAAGTCATGTGCATTGGCCCCTCCA TTGAGGATTTATTCCGATTGCAATGATCAGAAACTC AGAAAGTTTCAGCTAAAGTTTGGGGTTGACAAGATTCAAGCCATTGCCACCAGCATTGTCATTACAAGTCACAAGATATTTGGTTCTGTAACCATTATGCCCTTCTAATTTGCTCAAAAGTGCATACTTATTTATTATAAACAGGA CCACAAATATACAAATGGATTGCGAGGAGTCAAGTCCATTTGTTCCTGTGGTTATTTGCAAGTTCTGAGTTTATTGGGTGATA CAGAAAATGGTTGTAGAAGGTTGTTTTTCGTAC ATTTGATAGCTAGTTTAAACTTGTAAATTGACATGTTTTAAAAaaaaa                                                                                                                                                                                                      ]




>consensus_11208#0
CCAAAATTGCCAAAATCACCCTCCAATTCCTTTCCCCTCCTCCCTCCCCTCTGCCGCCAT
GGCCGCCTCCTCCTCCTCCTCCCCCCTTGACCCACACCACCAATCGCCCCAAATCCATGA
GACTCCCCGCGCCACAATCCAGCCCTGCCGCACGAGGATGTCCCAGTCCGACGTTGTCTA
CAGCTGCGGATCTTGTGGATACCCTCTGAACCTTTCATCTTCTAACCGAAGCACATCTGA
CGTAGGATCCTCATACCAAAAGTCTGTGAAGAAAGGTCTGATTTCATTCATTACTGTTGA
TCTGAGCCGATTTACTCAGGTAGACGAGATATCTTGCTTTCCCCTCACCTGGCGTAGCTA
TCGGCCAAAAACTAAGCTTCTCTGCCGAAAGTGTGGGGCATCTATTGGCTATGGGTATGG
TGAACCAGCTGTTCTGTGCAGCTTTGATCCAGCCAGTTCATCATCTAGTACATCCCAAAA
GTATTTAATAAAAATCCAGGCTCTCCAGCCTTCGGATAGTACTCAGTAGTCTGTCAACTT
CAGCCAAAATTTGGAAAGAGAGGAAATGGATGACAACGTGGAAAACTATATCAATTTCCT
ATCAGATGATTGCTTGATTTGTATATTTAACAAGCTTGAAAGTGAATCGGACAGGAATGC
TTTTGGCTTAACTTGTAAGAATTGGTTTAAGGTTCGAAACATTGCCCGGAAATCAATAAT
TTTCCATTGTTCTTTTAACCCTAAAGTATATAAGGAGCACGCCAATTGCCTTTCAAAGTT
ATTGGCCCGCTCACCTTATCTTAACTTGGTCTCCCTCGCTGGGCTTACAGAACTACCTGA
CACGGCTTTAAATCAGCTGAGAATTTCTGGAGCATCATTGCAGTCCCTTTCTTTCTACTG
CTGCTCTGGTATTACGGATGATGGTTTAGAGGTGGTCTCAATCGGATGCCCTAATTTGGT
GAGTCTTGAACTCTACCGCTGCTTTAATATTACAGATCATGGTTTGGAAAATCTTTGCAA
GGGCTGCCATGCTTTGAAGAGTCTTAACCTGGGTTACTGTGTAGCCATTTCAGATCAAGG
GATTGCTGCAATCTTTAGGAATTGCCCGAATATTTCCACAATTATCATAGCATATTGCAG
AGGTTTATCCGGTGTTGGATTCAGAGGTTGTCCAGGTACACTTTCTCATCTAGAAGCTGA
GTCGTGCATGCTTTCTCCAGATGGTTTGTTGGATGTAGTGAGTGGTGGTGGACTGGAGTA
TCTAAATTTGTACAATTTGAAAAGCCCAACTGGACTTGATGGCCTGGACAGAGTTGGTTA
TGCGAGAAGTCTTCGGTTTTTAAACCTCAGGATGTGCCGTTACCTTACCGATGATTCTGT
GACGGCAATAGCTAGCGGGTGTCCATTGATTGAGGAATGGAGCCTCGCTGTCTGCCATGG
AGTTCGCTTGCCTGGATGGTCTGCGATTGGATTGCTCTGCAACAAGCTGAGAATCTTGCA
TGTTAACCGTTGCCGAAACATTTGTGACCAAGGTTTGCAGGCTCTAGGGGATGGCTGTGT
ATGCCTTCAAGTTCTGCATATCCATGGATGTGGCAAGATCACTAATAATGGTCTGGCATC
ATTTAGCATTGCTAGGCCCAATGTGAAACAAAGGGCTGATGAAGTCATGTGCATTGGCCC
CTCCATTGAGGATTTATTCCGATTGCAATGATCAGAAACTCAGAAAGTTTCAGCTAAAGT
TTGGGGTTGACAAGATTCAAGCCATTGCCACCAGCATTGTCATTACAAGTCACAAGATAT
TTGGTTCTGTAACCATTATGCCCTTCTAATTTGCTCAAAAGTGCATACTTATTTATTATA
AACAGGACCACAAATATACAAATGGATTGCGAGGAGTCAAGTCCATTTGTTCCTGTGGTT
ATTTGCAAGTTCTGAGTTTATTGGGTGATACAGAAAATGGTTGTAGAAGGTTGTTTTTCG
TACAATTTGATAGCTAGTTTAAACTTGTAAATTGACATGTTTTAAAACCATCGAAAATTG
AATTGGATGGGTTGGTTGTACTACAGCGGTTGAACCGGTGTTTAAACTTTCCGATGGATT
GTATTAGGTTAACTCGAGAAGTTCAACTATCAGAATGCCACCATAGCTGAAAACAATTTT
TAAGTTTTGATGAAATGTAAACAAAGAAAATCCTGAACTTGTTGACCAATCGAAGTTGTT
GACGAATGAT

consensusID : consensus_11208#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 363
fasta sequence

                              [AATTGCCAAAATCACCCTCCAATTCCTTTCCCCTCCTCCCTCCCCTCTGCCGCCATGGCCGCCTCCTCCTCCTCCTCCCCCCCTTGACCCACACCACCAATCGCCCCAAATCCATGAGACTCCCCGCGCCACAATCCAGCCCTGCCGCACGAGGATGTCCCAGTCCGACGTTGTCTACAGCTGCGGATCTTGTGGATACCCTCTGAACCTTTCATCTTCTAACCGAAGCACATCTGACGTAGGATCCTCATACCAAAAGTCTGTGAAGAAAGAAACTACCTGACACGGCTTTAAATCAGCTGAGAATTTCTGGAGCATCATTGCAGTCCCTTTCTTTCTACTGGCTGCTCTGGTATTACGGAT]

[+] EMBL CF325574             [AATTGCCAAAATCACCCTCCAATTCCTTTCCCCTCCTCCCTCCCCTCTGCCGCCATGGCCGCCTCCTCCTCCTCCTCCCCCCCTTGACCCACACCACCAATCGCCCCAAATCCATGAGACTCCCCGCGCCACAATCCAGCCCTGCCGCACGAGGATGTCCCAGTCCGACGTTGTCTACAGCTGCGGATCTTGTGGATACCCTCTGAACCTTTCATCTTCTAACCGAAGCACATCTGACGTAGGATCCTCATACCAAAAGTCTGTGAAGAAAGAAACTACCTGACACGGCTTTAAATCAGCTGAGAATTTCTGGAGCATCATTGCAGTCCCTTTCTTTCTACTGGCTGCTCTGGTATTACGGAT]




>consensus_11208#1
AATTGCCAAAATCACCCTCCAATTCCTTTCCCCTCCTCCCTCCCCTCTGCCGCCATGGCC
GCCTCCTCCTCCTCCTCCCCCCCTTGACCCACACCACCAATCGCCCCAAATCCATGAGAC
TCCCCGCGCCACAATCCAGCCCTGCCGCACGAGGATGTCCCAGTCCGACGTTGTCTACAG
CTGCGGATCTTGTGGATACCCTCTGAACCTTTCATCTTCTAACCGAAGCACATCTGACGT
AGGATCCTCATACCAAAAGTCTGTGAAGAAAGAAACTACCTGACACGGCTTTAAATCAGC
TGAGAATTTCTGGAGCATCATTGCAGTCCCTTTCTTTCTACTGGCTGCTCTGGTATTACG
GAT

consensusID : consensus_11208#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 209
fasta sequence

                              [CAATGATCAGAAACTCAGAAAGTTTCAGCTAAAGTTTGGGGTNGACAAGATTCAAGCCATTGCCACCAAATATCTTGTGACTTGTAATGACAATGCTGGTGGCAATGGCTTGAATCTTGTCACAAGATATTNGGNTCTGTAACCATTATGCCCTTNTAATTTGCTCAAAAGTGCATACTTATTTATTATAAACAGGACCACAAATATAC]

[+] EMBL AU181291             [CAATGATCAGAAACTCAGAAAGTTTCAGCTAAAGTTTGGGGTNGACAAGATTCAAGCCATTGCCACCAAATATCTTGTGACTTGTAATGACAATGCTGGTGGCAATGGCTTGAATCTTGTCACAAGATATTNGGNTCTGTAACCATTATGCCCTTNTAATTTGCTCAAAAGTGCATACTTATTTATTATAAACAGGACCACAAATATAC]




>consensus_11208#2
CAATGATCAGAAACTCAGAAAGTTTCAGCTAAAGTTTGGGGTNGACAAGATTCAAGCCAT
TGCCACCAAATATCTTGTGACTTGTAATGACAATGCTGGTGGCAATGGCTTGAATCTTGT
CACAAGATATTNGGNTCTGTAACCATTATGCCCTTNTAATTTGCTCAAAAGTGCATACTT
ATTTATTATAAACAGGACCACAAATATAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11208#0      CCAAAATTGCCAAAATCACCCTCCAATTCCTTTCCCCTCCTCCCTCCCCTCTGCCGCCAT 60
consensus_11208#2      ------------------------------------------------------------
consensus_11208#1      ------------------------------------------------------------
                                                                                   

consensus_11208#0      GGCCGCCTCCTCCTCCTCCTCCCCCCTTGACCCACACCACCAATCGCCCCAAATCCATGA 120
consensus_11208#2      ------------------------------------------------------------
consensus_11208#1      ------------------------------------------------------------
                                                                                   

consensus_11208#0      GACTCCCCGCGCCACAATCCAGCCCTGCCGCACGAGGATGTCCCAGTCCGACGTTGTCTA 180
consensus_11208#2      ------------------------------------------------------------
consensus_11208#1      ------------------------------------------------------------
                                                                                   

consensus_11208#0      CAGCTGCGGATCTTGTGGATACCCTCTGAACCTTTCATCTTCTAACCGAAGCACATCTGA 240
consensus_11208#2      ------------------------------------------------------------
consensus_11208#1      ------------------------------------------------------------
                                                                                   

consensus_11208#0      CGTAGGATCCTCATACCAAAAGTCTGTGAAGAAAGGTCTGATTTCATTCATTACTGTTGA 300
consensus_11208#2      ------------------------------------------------------------
consensus_11208#1      ------------------------------------------------------------
                                                                                   

consensus_11208#0      TCTGAGCCGATTTACTCAGGTAGACGAGATATCTTGCTTTCCCCTCACCTGGCGTAGCTA 360
consensus_11208#2      ------------------------------------------------------------
consensus_11208#1      ------------------------------------------------------------
                                                                                   

consensus_11208#0      TCGGCCAAAAACTAAGCTTCTCTGCCGAAAGTGTGGGGCATCTATTGGCTATGGGTATGG 420
consensus_11208#2      ------------------------------------------------------------
consensus_11208#1      ------------------------------------------------------------
                                                                                   

consensus_11208#0      TGAACCAGCTGTTCTGTGCAGCTTTGATCCAGCCAGTTCATCATCTAGTACATCCCAAAA 480
consensus_11208#2      ------------------------------------------------------------
consensus_11208#1      ------------------------------------------------------------
                                                                                   

consensus_11208#0      GTATTTAATAAAAATCCAGGCTCTCCAGCCTTCGGATAGTACTCAGTAGTCTGTCAACTT 540
consensus_11208#2      ------------------------------------------------------------
consensus_11208#1      ------------------------------------------------------------
                                                                                   

consensus_11208#0      CAGCCAAAATTTGGAAAGAGAGGAAATGGATGACAACGTGGAAAACTATATCAATTTCCT 600
consensus_11208#2      ------------------------------------------------------------
consensus_11208#1      ------------------------------------------------------------
                                                                                   

consensus_11208#0      ATCAGATGATTGCTTGATTTGTATATTTAACAAGCTTGAAAGTGAATCGGACAGGAATGC 660
consensus_11208#2      ------------------------------------------------------------
consensus_11208#1      ------------------------------------------------------------
                                                                                   

consensus_11208#0      TTTTGGCTTAACTTGTAAGAATTGGTTTAAGGTTCGAAACATTGCCCGGAAATCAATAAT 720
consensus_11208#2      ------------------------------------------------------------
consensus_11208#1      ------------------------------------------------------------
                                                                                   

consensus_11208#0      TTTCCATTGTTCTTTTAACCCTAAAGTATATAAGGAGCACGCCAATTGCCTTTCAAAGTT 780
consensus_11208#2      ------------------------------------------------------------
consensus_11208#1      ------------------------------------------------------------
                                                                                   

consensus_11208#0      ATTGGCCCGCTCACCTTATCTTAACTTGGTCTCCCTCGCTGGGCTTACAGAACTACCTGA 840
consensus_11208#2      ------------------------------------------------------------
consensus_11208#1      ------------------------------------------------------------
                                                                                   

consensus_11208#0      CACGGCTTTAAATCAGCTGAGAATTTCTGGAGCATCATTGCAGTCCCTTTCTTTCTACTG 900
consensus_11208#2      ------------------------------------------------------------
consensus_11208#1      ------------------------------------------------------------
                                                                                   

consensus_11208#0      CTGCTCTGGTATTACGGATGATGGTTTAGAGGTGGTCTCAATCGGATGCCCTAATTTGGT 960
consensus_11208#2      ------------------------------------------------------------
consensus_11208#1      ------------------------------------------------------------
                                                                                   

consensus_11208#0      GAGTCTTGAACTCTACCGCTGCTTTAATATTACAGATCATGGTTTGGAAAATCTTTGCAA 1020
consensus_11208#2      ------------------------------------------------------------
consensus_11208#1      ------------------------------------------------------------
                                                                                   

consensus_11208#0      GGGCTGCCATGCTTTGAAGAGTCTTAACCTGGGTTACTGTGTAGCCATTTCAGATCAAGG 1080
consensus_11208#2      ------------------------------------------------------------
consensus_11208#1      ------------------------------------------------------------
                                                                                   

consensus_11208#0      GATTGCTGCAATCTTTAGGAATTGCCCGAATATTTCCACAATTATCATAGCATATTGCAG 1140
consensus_11208#2      ------------------------------------------------------------
consensus_11208#1      ------------------------------------------------------------
                                                                                   

consensus_11208#0      AGGTTTATCCGGTGTTGGATTCAGAGGTTGTCCAGGTACACTTTCTCATCTAGAAGCTGA 1200
consensus_11208#2      ------------------------------------------------------------
consensus_11208#1      ------------------------------------------------------------
                                                                                   

consensus_11208#0      GTCGTGCATGCTTTCTCCAGATGGTTTGTTGGATGTAGTGAGTGGTGGTGGACTGGAGTA 1260
consensus_11208#2      ------------------------------------------------------------
consensus_11208#1      ------------------------------------------------------------
                                                                                   

consensus_11208#0      TCTAAATTTGTACAATTTGAAAAGCCCAACTGGACTTGATGGCCTGGACAGAGTTGGTTA 1320
consensus_11208#2      ------------------------------------------------------------
consensus_11208#1      ------------------------------------------------------------
                                                                                   

consensus_11208#0      TGCGAGAAGTCTTCGGTTTTTAAACCTCAGGATGTGCCGTTACCTTACCGATGATTCTGT 1380
consensus_11208#2      ------------------------------------------------------------
consensus_11208#1      ------------------------------------------------------------
                                                                                   

consensus_11208#0      GACGGCAATAGCTAGCGGGTGTCCATTGATTGAGGAATGGAGCCTCGCTGTCTGCCATGG 1440
consensus_11208#2      ------------------------------------------------------------
consensus_11208#1      ------------------------------------------------------------
                                                                                   

consensus_11208#0      AGTTCGCTTGCCTGGATGGTCTGCGATTGGATTGCTCTGCAACAAGCTGAGAATCTTGCA 1500
consensus_11208#2      ------------------------------------------------------------
consensus_11208#1      ------------------------------------------------------------
                                                                                   

consensus_11208#0      TGTTAACCGTTGCCGAAACATTTGTGACCAAGGTTTGCAGGCTCTAGGGGATGGCTGTGT 1560
consensus_11208#2      ------------------------------------------------------------
consensus_11208#1      ------------------------------------------------------------
                                                                                   

consensus_11208#0      ATGCCTTCAAGTTCTGCATATCCATGGATGTGGCAAGATCACTAATAATGGTCTGGCATC 1620
consensus_11208#2      ------------------------------------------------------------
consensus_11208#1      ------------------------------------------------AATTGCCAAAAT 12
                                                                                   

consensus_11208#0      ATTTAGCATTGCTAGGCCCAATGTGAAACAAAGGGCTGATGAAGTCATGTGCATTGGCCC 1680
consensus_11208#2      ------------------------------------------------------------
consensus_11208#1      CACCCTCCAATTCCTTTCCCCTCCTCCCTCCCCTCTGCCGCCATGGCCGCCTCCTCCTCC 72
                                                                                   

consensus_11208#0      CTCCATTGAGGATTTATTCCGATTGCAATGATCAGAAACTCAGAAAGTTTCA---GCTAA 1737
consensus_11208#2      -------------------------CAATGATCAGAAACTCAGAAAGTTTCA---GCTAA 32
consensus_11208#1      TCCTCCCCCCCTTGACCCACACCACCAATCGCCCCAAATCCATGAGACTCCCCGCGCCAC 132
                                                ****   *  ***  **  *   * *    ** * 

consensus_11208#0      AGTTTGGGGTTGAC-----AAGAT---TCAAGCCATTGCCACCA----------GCATTG 1779
consensus_11208#2      AGTTTGGGGTNGAC-----AAGAT---TCAAGCCATTGCCACCAAATATCTTGTGACTTG 84
consensus_11208#1      AATCCAGCCCTGCCGCACGAGGATGTCCCAGTCCGACGTTGTCTACAGCTGCGGATCTTG 192
                       * *   *    * *     * ***    **  **   *    *              ***

consensus_11208#0      TCATTACAA-------------------------GTCACAA--GATATTTGGTTCTGTAA 1812
consensus_11208#2      TAATGACAATGCTGGTGGCAATGGCTTGAATCTTGTCACAA--GATATTNGGNTCTGTAA 142
consensus_11208#1      TGGATACCCTCTGAACCTTTCATCTTCTAACCGAAGCACATCTGACGTAGGATCCTCATA 252
                       *    **                             ****   **  *  *   **   *

consensus_11208#0      CCA-----TTATGCCCTTCTAATTTGCTCAAAAGTGCAT--ACTTATTTATTATAAACAG 1865
consensus_11208#2      CCA-----TTATGCCCTTNTAATTTGCTCAAAAGTGCAT--ACTTATTTATTATAAACAG 195
consensus_11208#1      CCAAAAGTCTGTGAAGAAAGAAACTACCTGACACGGCTTTAAATCAGCTGAGAATTTCTG 312
                       ***      * **       **  * *   * *  ** *  * * *  *   *    * *

consensus_11208#0      GACCACAAATATACAAATGGATTGCGAGGAGTCAAGTCCATTTGTTCCTGTGGTTATTTG 1925
consensus_11208#2      GACCACAAATATAC---------------------------------------------- 209
consensus_11208#1      GAGCATCATTGCAGTCCCTTTCTTTCTACTGGCTGCTCTGGTATTACGGAT--------- 363
                       ** **  * *  *                                               

consensus_11208#0      CAAGTTCTGAGTTTATTGGGTGATACAGAAAATGGTTGTAGAAGGTTGTTTTTCGTACAA 1985
consensus_11208#2      ------------------------------------------------------------
consensus_11208#1      ------------------------------------------------------------
                                                                                   

consensus_11208#0      TTTGATAGCTAGTTTAAACTTGTAAATTGACATGTTTTAAAACCATCGAAAATTGAATTG 2045
consensus_11208#2      ------------------------------------------------------------
consensus_11208#1      ------------------------------------------------------------
                                                                                   

consensus_11208#0      GATGGGTTGGTTGTACTACAGCGGTTGAACCGGTGTTTAAACTTTCCGATGGATTGTATT 2105
consensus_11208#2      ------------------------------------------------------------
consensus_11208#1      ------------------------------------------------------------
                                                                                   

consensus_11208#0      AGGTTAACTCGAGAAGTTCAACTATCAGAATGCCACCATAGCTGAAAACAATTTTTAAGT 2165
consensus_11208#2      ------------------------------------------------------------
consensus_11208#1      ------------------------------------------------------------
                                                                                   

consensus_11208#0      TTTGATGAAATGTAAACAAAGAAAATCCTGAACTTGTTGACCAATCGAAGTTGTTGACGA 2225
consensus_11208#2      ------------------------------------------------------------
consensus_11208#1      ------------------------------------------------------------
                                                                                   

consensus_11208#0      ATGAT 2230
consensus_11208#2      -----
consensus_11208#1      -----