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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11215#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 976 fasta sequence
[CTCCTCCCCGTCGTCGACCTCGTGCTCGGCTGCCTGGAGTCTCCCGGTGGCGACGTCGGCCGGCAGGAGGGGGCTGCTCGCGCTGGGCGCGGGGTTCCTGGCTTCCCCTGGGCTTCTGTGCCCCGCCGGCGACGCCGGAGCGACGCGCATCGAGTACTACGCGACGGTGGGGGACAAGCTGTGCGACATGAACGTCGTCAAGTCGGGGCTCGGCTACTGCGACGTCGAAGTCGGCACCGGCGCCCAGCCCCCGCGCGGCCAGCTCATAAATGTACACTACACTGCAAGATTTACTGACGGGATAGTGTTCGACAGCACCTACAAGCGAGGACGGCCACT-GACAATGCGCCTTGGCGCAG-GCAAGATCCTCCGAGGGCTTGAACAGGGAATCAGTGGTGGCGGTGGTGTGCCACCCATGCTCGTTGGTG-GAAAGCGCAAGCTTATGATACCTGCAACTTTGGCATACGGACCTGAACCAGCAGGTTGCTTCTCAGGAGACTGTAATATTCCCGGCAACACCACACTCCTATACGACATCTTCCTGGTTGGATTTTACAAGTGAGCATATGATGAAAAGGAATATGCATGACTTGAACAGACTAGGTGCAAACAAGATTTTCGAGTAAATTTTGGCGTTTCATACAAGAGGCGGGACTACGGACAGATGAAGAGAAAGGGTGCGACATGCCTAAGCCCAGACGCCGAAAGCAAATGCGTCACCGGAGCTCCTTGGGTCTCCAATACGCAGAGTACTACATTTGCAATCTGTACCAAGAAGTGAAAGGATATATAACAAACCGGTCCTCTGATATACTATCAAATTGGTCTTATGTTTTCTAGAGAAGAAAAGTCTTGTGTTTGTGTAAGTATAACGTTGTAAAGACATGTCTCATTATTCATACTGTCATTGGTACAGCCAAACACAACAAAAATTCCCATCCTTTGTGGCAAGTCCTAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK060441 [CTCCTCCCCGTCGTCGACCTCGTGCTCGGCTGCCTGGAGTCTCCCGGTGGCGACGTCGGCCGGCAGGAGGGGGCTGCTCGCGCTGGGCGCGGGGTTCCTGGCTTCCCCTGGGCTTCTGTGCCCCGCCGGCGACGCCGGAGCGACGCGCATCGAGTACTACGCGACGGTGGGGGACAAGCTGTGCGACATGAACGTCGTCAAGTCGGGGCTCGGCTACTGCGACGTCGAAGTCGGCACCGGCGCCCAGCCCCCGCGCGGCCAGCTCATAAATGTACACTACACTGCAAGATTTACTGACGGGATAGTGTTCGACAGCACCTACAAGCGAGGACGGCCACT GACAATGCGCCTTGGCGCAG GCAAGATCCTCCGAGGGCTTGAACAGGGAATCAGTGGTGGCGGTGGTGTGCCACCCATGCTCGTTGGTG GAAAGCGCAAGCTTATGATACCTGCAACTTTGGCATACGGACCTGAACCAGCAGGTTGCTTCTCAGGAGACTGTAATATTCCCGGCAACACCACACTCCTATACGACATCTTCCTGGTTGGATTTTACAAGTGAGCATATGATGAAAAGGAATATGCATGACTTGAACAGACTAGGTGCAAACAAGATTTTCGAGTAAATTTTGGCGTTTCATACAAGAGGCGGGACTACGGACAGATGAAGAGAAAGGGTGCGACATGCCTAAGCCCAGACGCCGAAAGCAAATGCGTCACCGGAGCTCCTTGGGTCTCCAATACGCAGAGTACTACATTTGCAATCTGTACCAAGAAGTGAAAGGATATATAACAAACCGGTCCTCTGATATACTATCAAATTGGTCTTATGTTTTCTAGAGAAGAAAAGTCTTGTGTTTGTGTAAGTATAACGTTGTAAAGACATGTCTCATTATTCATACTGTCATTGGTACAGCCAAACACAACAAAAATTCCCAT ]
[+] EMBL AK072946 [CTCCTCCCCGTCGTCGACCTCGTGCTCGGCTGCCTGGAGTCTCCCGGTGGCGACGTCGGCCGGCAGGAGGGGGCTGCTCGCGCTGGGCGCGGGGTTCCTGGCTTCCCCTGGGCTTCTGTGCCCCGCCGGCGACGCCGGAGCGACGCGCATCGAGTACTACGCGACGGTGGGGGACAAGCTGTGCGACATGAACGTCGTCAAGTCGGGGCTCGGCTACTGCGACGTCGAAGTCGGCACCGGCGCCCAGCCCCCGCGCGGCCAGCTCATAAATGTACACTACACTGCAAGATTTACTGACGGGATAGTGTTCGACAGCACCTACAAGCGAGGACGGCCACT GACAATGCGCCTTGGCGCAG GCAAGATCCTCCGAGGGCTTGAACAGGGAATCAGTGGTGGCGGTGGTGTGCCACCCATGCTCGTTGGTG GAAAGCGCAAGCTTATGATACCTGCAACTTTGGCATACGGACCTGAACCAGCAGGTTGCTTCTCAGGAGACTGTAATATTCCCGGCAACACCACACTCCTATACGACATCTTCCTGGTTGGATTTTACAAGTGAGCATATGATGAAAAGGAATATGCATGACTTGAACAGACTAGGTGCAAACAAGATTTTCGAGTAAATTTTGGCGTTTCATACAAGAGGCGGGACTACGGACAGATGAAGAGAAAGGGTGCGACATGCCTAAGCCCAGACGCCGAAGGCAAATGCGTCACCGGAGCTCCTTGGGTCTCCAATACGCAGAGTACTACATTTGCAATCTGTACCAAGAAGTGAAAGGATATATAACAAACCGGTCCTCTGATATACTATCAAATTGGTCTTATGTTTTCTAGAGAAGAAAAGTCTTGTGTTTGTGTAAGTATAACGTTGTAAAGACATGTCTCATTATTCATACTGTCATTGGTAGAGCCAAACACAACAAA ]
[+] EMBL AK061027 [CTCCTCCCCGTCGTCGACCTCGTGCTCGGCTGCCTGGAGTCTCCCGGTGGCGACGTCGGCCGGCAGGAGGGGGCTGCTCGCGCTGGGCGCGGGGTTCCTGGCTTCCCCTGGGCTTCTGTGCCCCGCCGGCGACGCCGGAGCGACGCGCATCGAGTACTACGCGACGGTGGGGGACAAGCTGTGCGACATGAACGTCGTCAAGTCGGGGCTCGGCTACTGCGACGTCGAAGTCGGCACCGGCGCCCAGCCCCCGCGCGGCCAGCTCATAAATGTACACTACACTGCAAGATTTACTGACGGGATAGTGTTCGACAGCACCTACAAGCGAGGACGGCCACT GACAATGCGCCTTGGCGCAG GCAAGATCCTCCGAGGGCTTGAACAGGGAATCAGTGGTGGCGGTGGTGTGCCACCCATGCTCGTTGGTG GAAAGCGCAAGCTTATGATACCTGCAACTTTGGCATACGGACCTGAACCAGCAGGTTGCTTCTCAGGAGACTGTAATATTCCCGGCAACACCACACTCCTATACGACATCTTCCTGGTTGGATTTTACAAGTGAGCATATGATGAAAAGGAATATGCATGACTTGAACAGACTAGGTGCAAACAAGATTTTCGAGTAAATTTTGGCGTTTCATACAAGAGGCGGGACTACGGACAGATGAAGAGAAAGGGTGCGACATGCCTAAGCCCAGACGCCGAAAGCAAATGCGTCACCGGAGCTCCTTGGGTCTCCAATACGCAGAGTACTACATTTGCAATCTGTACCAAGAAGTGAAAGGATATATAACAAACCGGTCCTCTGATATACTATCAAATTGGTCTTATGTTTTCTAGAGAAGAAAAGTCTTGTGTTTGTGTAAGTATAACGTTGTAAAGACATGTCTCATTATTCATACTGTCATTGGTACAGC ]
[+] EMBL AK104401 [CTCCTCCCCGTCGTCGACCTCGTGCTCGGCTGCCTGGAGTCTCCCGGTGGCGACGTCGGCCGGCAGGAGGGGGCTGCTCGCGCTGGGCGCGGGGTTCCTGGCTTCCCCTGGGCTTCTGTGCCCCGCCGGCGACGCCGGAGCGACGCGCATCGAGTACTACGCGACGGTGGGGGACAAGCTGTGCGACATGAACGTCGTCAAGTCGGGGCTCGGCTACTGCGACGTCGAAGTCGGCACCGGCGCCCAGCCCCCGCGCGGCCAGCTCATAAATGTACACTACACTGCAAGATTTACTGACGGGATAGTGTTCGACAGCACCTACAAGCGAGGACGGCCACT GACAATGCGCCTTGGCGCAG GCAAGATCCTCCGAGGGCTTGAACAGGGAATCAGTGGTGGCGGTGGTGTGCCACCCATGCTCGTTGGTG GAAAGCGCAAGCTTATGATACCTGCAACTTTGGCATACGGACCTGAACCAGCAGGTTGCTTCTCAGGAGACTGTAATATTCCCGGCAACACCACACTCCTATACGACATCTTCCTGGTTGGATTTTACAAGTGAGCATATGATGAAAAGGAATATGCATGACTTGAGCAGACTAGGTGCAAACAAGATTTTCGAGTAAATTTTGGCGTTTCATACAAGAGGCGGGACTACGGACAGATGAAGAGAAAGGGTGCGACATGCCTAAGCCCAGACGCCGAAAGCAAATGCGTCACCGGAGCTCCTTGGGTCTCCAATACGCAGAGTACTACATTTGCAATCTGTACCAAGAAGTGAAAGGATATATAACAAACCGGTCCTCTGATATACTATCAAATTGGTCTTATGTTTTCTAGAGAAGAAAAGTCTTGTGTTTGTGTAAGTATAACGTTGTAAAGACATGTCTCATTATTCATACTGTCATTGGTAC ]
[+] EMBL CA754530 [CTCCTCCCCGTCGTCGACCTCGTGCTCGGCTGCCTGGAGTCTCCCGGTGGCGACGTCGGCCGGCAGGAGGGGGCTGCTCGCGCTGGGCGCGGGGTTCCTGGCTTCCCCTGGGCTTCTGTGCCCCGGCGGCGACGCCGGAGCGACGCGCATCGAGTACTACGCGACGGTGGGGGACAAGCTGTGCGACATGAACGTCGTCAAGTCGGGGATCGGTTACTGCGACGTCGAAGTCGGCACCGGCGCCCAGCCCCCGCGCGGACAGCTCATAAATGTACACTACACTGCAAGATTTACTGACGGGATAGTGTTCGACAGCACCTACAAGCGAGGACGGGCACTAGAC ATGCGCCTTGGCGCAA GCAAGATCCTCCGAGGGCTTGTACAGGGAATCACTGGTGGCGGTGGTGTGCCACCCATGCTCGTTGGTGCGAA ]
[+] EMBL OSS14958A [ ACGTCGTCAAGTCGGGGCTCGGCTACTGCGACGTCGAAGTCGGCACCGGCGCCCAGCCNCCGCGCGGCCAGCTCATAAATGTACACTACACTGCAAGATTTACTGACGGGATAGTGTTCGACAGCACCTACAAGCGAGGACGGCCACT GACAATGCGCCTTGGCG AGNGCAAGATCCTCCGAGGGCTTGAACAGGGAATCAGTGGTGTCNNTGGcctgt ]
[-] EMBL CF325422 [ ACCACACTCCTATACGACATCTTCCTGGTTGGATTTTACAAGTGAGCATATGATGAAAAGGAATATGCATGACTTGAACAGACTAGGTGCAAACAAGATTTTCGAGTAAATTTTGGCGTTTCATACAAGAGGCGGGACTACGGACAGATGAAGAGAAAGGGTGCGACATGCCTAAGCCCAGACGCCGAAAGCAAATGCGTCACCGGAGCTCCTTGGGTCTCCAATACGCAGAGTACTACATTTGCAATCTGTACCAAGAAGTGAAAGGATATATAACAAACCGGTCCTCTGATATACTATCAAATTGGTCTTATGTTTTCTAGAGAAGAAAAGTCTTGTGTTTGTGTAAGTATAACGTTGTAAAGACATGTCTCATTATTCATACTGTCATTGGTACAGCCAAACACAACAAAAATTCCCATCCTTTGTGGCAAGTCCTAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_11215#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 270 fasta sequence
[GCGTCACCGGAGCTCCTTGGGTCTCCAATACGCAGAGTACTACATTTGCAATCTGTACCAAGAAGTGAAAGGATATATAACAAACCGGTCCTCTGATATACTATCAAATTGGTCTTATGTTTTCTAGAGAAGAAAAGTCTTGTGTTTGTGTAAGTATAACGTTGTAAAGACATGTCTCATTATTCATACTGTCATTGGTACAGCCAAACACAACAAAAATTCCCATCCTTTGTGGCAAGTCCTAACTAAATGAAGTTGAACTCTGACTGA]
[+] EMBL AU075519 [GCGTCACCGGAGCTCCTTGGGTCTCCAATACGCAGAGTACTACATTTGCAATCTGTACCAAGAAGTGAAAGGATATATAACAAACCGGTCCTCTGATATACTATCAAATTGGTCTTATGTTTTCTAGAGAAGAAAAGTCTTGTGTTTGTGTAAGTATAACGTTGTAAAGACATGTCTCATTATTCATACTGTCATTGGTACAGCCAAACACAACAAAAATTCCCATCCTTTGTGGCAAGTCCTAACTAAATGAAGTTGAACTCTGACTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11215#0 CTCCTCCCCGTCGTCGACCTCGTGCTCGGCTGCCTGGAGTCTCCCGGTGGCGACGTCGGC 60
consensus_11215#1 ------------------------------------------------------------
consensus_11215#0 CGGCAGGAGGGGGCTGCTCGCGCTGGGCGCGGGGTTCCTGGCTTCCCCTGGGCTTCTGTG 120
consensus_11215#1 ------------------------------------------------------------
consensus_11215#0 CCCCGCCGGCGACGCCGGAGCGACGCGCATCGAGTACTACGCGACGGTGGGGGACAAGCT 180
consensus_11215#1 ------------------------------------------------------------
consensus_11215#0 GTGCGACATGAACGTCGTCAAGTCGGGGCTCGGCTACTGCGACGTCGAAGTCGGCACCGG 240
consensus_11215#1 ------------------------------------------------------------
consensus_11215#0 CGCCCAGCCCCCGCGCGGCCAGCTCATAAATGTACACTACACTGCAAGATTTACTGACGG 300
consensus_11215#1 ------------------------------------------------------------
consensus_11215#0 GATAGTGTTCGACAGCACCTACAAGCGAGGACGGCCACTGACAATGCGCCTTGGCGCAGG 360
consensus_11215#1 ------------------------------------------------------------
consensus_11215#0 CAAGATCCTCCGAGGGCTTGAACAGGGAATCAGTGGTGGCGGTGGTGTGCCACCCATGCT 420
consensus_11215#1 ------------------------------------------------------------
consensus_11215#0 CGTTGGTGGAAAGCGCAAGCTTATGATACCTGCAACTTTGGCATACGGACCTGAACCAGC 480
consensus_11215#1 ------------------------------------------------------------
consensus_11215#0 AGGTTGCTTCTCAGGAGACTGTAATATTCCCGGCAACACCACACTCCTATACGACATCTT 540
consensus_11215#1 ------------------------------------------------------------
consensus_11215#0 CCTGGTTGGATTTTACAAGTGAGCATATGATGAAAAGGAATATGCATGACTTGAACAGAC 600
consensus_11215#1 ------------------------------------------------------------
consensus_11215#0 TAGGTGCAAACAAGATTTTCGAGTAAATTTTGGCGTTTCATACAAGAGGCGGGACTACGG 660
consensus_11215#1 ------------------------------------------------------------
consensus_11215#0 ACAGATGAAGAGAAAGGGTGCGACATGCCTAAGCCCAGACGCCGAAAGCAAATGCGTCAC 720
consensus_11215#1 -----------------------------------------------------GCGTCAC 7
*******
consensus_11215#0 CGGAGCTCCTTGGGTCTCCAATACGCAGAGTACTACATTTGCAATCTGTACCAAGAAGTG 780
consensus_11215#1 CGGAGCTCCTTGGGTCTCCAATACGCAGAGTACTACATTTGCAATCTGTACCAAGAAGTG 67
************************************************************
consensus_11215#0 AAAGGATATATAACAAACCGGTCCTCTGATATACTATCAAATTGGTCTTATGTTTTCTAG 840
consensus_11215#1 AAAGGATATATAACAAACCGGTCCTCTGATATACTATCAAATTGGTCTTATGTTTTCTAG 127
************************************************************
consensus_11215#0 AGAAGAAAAGTCTTGTGTTTGTGTAAGTATAACGTTGTAAAGACATGTCTCATTATTCAT 900
consensus_11215#1 AGAAGAAAAGTCTTGTGTTTGTGTAAGTATAACGTTGTAAAGACATGTCTCATTATTCAT 187
************************************************************
consensus_11215#0 ACTGTCATTGGTACAGCCAAACACAACAAAAATTCCCATCCTTTGTGGCAAGTCCTAAAA 960
consensus_11215#1 ACTGTCATTGGTACAGCCAAACACAACAAAAATTCCCATCCTTTGTGGCAAGTCCTAACT 247
**********************************************************
consensus_11215#0 AAAAAAAAAAAAAAAA------- 976
consensus_11215#1 AAATGAAGTTGAACTCTGACTGA 270
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||