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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11230#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 2060 fasta sequence
[AATCTGCCATGTCGCCGCCATGGATCCCCTAATCGAGGACCCCCCCAACCTAGCGGAGACGAAGAAGAACGAGAAGGGAAGCCCACCGCGTCGCCATCATTAACTCCTCCTCTCCTCTCGTCTCCCTCGAAAGCACCACCGGATCCGACGACCCCCTCCTCCCCTTTCTCCCCTCCTCACGAAACCGCCTCGCCTTCCTCTTCTTTTCTTTTTCGCTCGCTTCGCATCGCTCACATGCCCCTGCCTGCCGCCGCAGACGGGGCGCCATGTCGCGTAGCGGGGTGGAGGTGGTCGTGAGCAGGGGTTGCTCCAGGCTCGTCCTCCCCGGGATGCAGCCTTCCTCCGCCTCCGCCGCTTCCTCCTCCTCCTTCTCGCGCGGCGGACATGGCGGCGGCGGCGACCGGAGGCCGCTGCCCG-ATGGCCCCTTCGCCGGATTGGTCATCTG-CGTCACCGGGCTATCCAAAGAGGCGAGGACTCAGGTGAAGGAGGCG-ACTGAGAGGATGGGAGGCGAGTACAGCGGGAGCCTGCATCCCAAGTGCACCCACCTA-GTGGTTCAGAGCTTCGCCGGCCGCAAGTTTGAGCACGCGGTCAAGCATGGCGCGAAGAATGGCCTCTTTGTTGTAACACTTGGTTGGCTTGTGGATTGCGTGCGGAGGAGCATGAGGTTGGATGAATCGTTATATAGCATCAAGAACATTGGGGAGAATGGAATGCCACTCGGGGAGTTCAACCGGCTTGTCGGCGCTCCTGTTAGTGGGAATTCTTGCCTTCCACCGATGATGTTTCAGGAAAAAACATTTTCAGACACGACCGAAAAGCATCGGCTTCAGACATCTAGAAAAGAACATGACCATGATGAATTTCTCTTTACAAACGACTCGATCTACATTGACCCTGGGATATCTGGTGAAATGAGGAAGAAGGTATCTG-ATGCTGCTACTAGAGAAGGTGCAAAATTGTTGGACCACTGGTTTATTGGCTGTCATGCGACATATGTTGTGTGTGAGGACGCTTCTGTCAAGAGATATGTTGGTCATTCAGACAACATTGTAACTCCACTTTGGATATTGAAAACCGCAAAGGAAAAAGGTTTGCAGCGTCTTGTCCATTTGTCTTCGGACCTGGCTAGGCAGGTTGCCACGATTCTTGAAAATGCCCAGACATTTCAAGAGAATAGAAAAATTGGGGATGTTCCTTCTGTCAATTCAAACTCCAGTGGAGTACCATCAACCCAAGGGGAGATAGATGAAATTCATCAAGAGAGGCAAAAATTTGTTGAAGTAGCAAAGAAAAATGTCCGAGATCGCCGTGCTCGCCGTATGCAGTCATGTGAAGTACCAATCCATCCAATCACGCCTGTGAAACTTATGGAATCAATCTGTTGGACCGTATCTGAGCCAACTACGTCCGCATGCATTTATACGGAGTTTTCATGGTCAGACGATGCCTTTGAGCAACAAAGCACTACTTTCTTCGATGCGAATGGGGATGGCAAGGATGATCAGTCAAGCGATAGTTTCACCCGCCCACTAAGAGAAAGTGAGAAGAGTGAAGTGATCTTTAAGAACCACTTCCTTACCGTACTCTTCCCCATTGATCGTTTTGGTGAGCTTGGACCTTCCTCAAGGACATTCTTCAGCAATGGTGGTTTCACACGCATACAAGTGCTTGATCACATCTACAAC-TTCTACCAGGAAAATATGTCTTCCGATGAGATAAATGTAGCCCTGCAAACGGATTCACGACATGCTGATCGACTTCGCTCGCTGTACGCAAGTACTGAATCAGCAGAAAGAGGTTTTGTAACATTCAAAAGAATTGATTTTTTGGGAAGCCGAAGAAGTTTTGAGGGGCT-AAAACGCCTCAGCAGAGAGAACAATAGCAATGTATATGAGCTTGTGATTAGGGCATAAACTGCACCATACTCGGTGTTATTTAGTCAAATTTGTTTGTTGTTTACAGGTTGATAGTGATGTACTACCATGTATGCACGCCGAATAAAATTGTAGGAGATAATGATATATTTATAGATCAATGAAAAAGATCATGTTGGGCAAAAA]
[+] EMBL AK073097 [AATCTGCCATGTCGCCGCCATGGATCCCCTAATCGAGGACCCCCCCAACCTAGCGGAGACGAAGAAGAACGAGAAGGGAAGCCCACCGCGTCGCCATCATTAACTCCTCCTCTCCTCTCGTCTCCCTCGAAAGCACCACCGGATCCGACGACCCCCTCCTCCCCTTTCTCCCCTCCTCACGAAACCGCCTCGCCTTCCTCTTCTTTTCTTTTTCGCTCGCTTCGCATCGCTCACATGCCCCTGCCTGCCGCCGCAGACGGGGCGCCATGTCGCGTAGCGGGGTGGAGGTGGTCGTGAGCAGGGGTTGCTCCAGGCTCGTCCTCCCCGGGATGCAGCCTTCCTCCGCCTCCGCCGCTTCCTCCTCCTCCTTCTCGCGCGGCGGACATGGCGGCGGCGGCGACCGGAGGCCGCTGCCCG ATGGCCCCTTCGCCGGATTGGTCATCTG CGTCACCGGGCTATCCAAAGAGGCGAGGACTCAGGTGAAGGAGGCG ACTGAGAGGATGGGAGGCGAGTACAGCGGGAGCCTGCATCCCAAGTGCACCCACCTA GTGGTTCAGAGCTTCGCCGGCCGCAAGTTTGAGCACGCGGTCAAGCATGGCGCGAAGAATGGCCTCTTTGTTGTAACACTTGGTTGGCTTGTGGATTGCGTGCGGAGGAGCATGAGGTTGGATGAATCGTTATATAGCATCAAGAACATTGGGGAGAATGGAATGCCACTCGGGGAGTTCAACCGGCTTGTCGGCGCTCCTGTTAGTGGGAATTCTTGCCTTCCACCGATGATGTTTCAGGAAAAAACATTTTCAGACACGACCGAAAAGCATCGGCTTCAGACATCTAGAAAAGAACATGACCATGATGAATTTCTCTTTACAAACGACTCGATCTACATTGACCCTGGGATATCTGGTGAAATGAGGAAGAAGGTATCTG ATGCTGCTACTAGAGAAGGTGCAAAATTGTTGGACCACTGGTTTATTGGCTGTCATGCGACATATGTTGTGTGTGAGGACGCTTCTGTCAAGAGATATGTTGGTCATTCAGACAACATTGTAACTCCACTTTGGATATTGAAAACCGCAAAGGAAAAAGGTTTGCAGCGTCTTGTCCATTTGTCTTCGGACCTGGCTAGGCAGGTTGCCACGATTCTTGAAAATGCCCAGACATTTCAAGAGAATAGAAAAATTGGGGATGTTCCTTCTGTCAATTCAAACTCCAGTGGAGTACCATCAACCCAAGGGGAGATAGATGAAATTCATCAAGAGAGGCAAAAATTTGTTGAAGTAGCAAAGAAAAATGTCCGAGATCGCCGTGCTCGCCGTATGCAGTCATGTGAAGTACCAATCCATCCAATCACGCCTGTGAAACTTATGGAATCAATCTGTTGGACCGTATCTGAGCCAACTACGTCCGCATGCATTTATACGGAGTTTTCATGGTCAGACGATGCCTTTGAGCAACAAAGCACTACTTTCTTCGATGCGAATGGGGATGGCAAGGATGATCAGTCAAGCGATAGTTTCACCCGCCCACTAAGAGAAAGTGAGAAGAGTGAAGTGATCTTTAAGAACCACTTCCTTACCGTACTCTTCCCCATTGATCGTTTTGGTGAGCTTGGACCTTCCTCAAGGACATTCTTCAGCAATGGTGGTTTCACACGCATACAAGTGCTTGATCACATCTACAAC TTCTACCAGGAAAATATGTCTTCCGATGAGATAAATGTAGCCCTGCAAACGGATTCACGACATGCTGATCGACTTCGCTCGCTGTACGCAAGTACTGAATCAGCAGAAAGAGGTTTTGTAACATTCAAAAGAATTGATTTTTTGGGAAGCCGAAGAAGTTTTGAGGGGCTAAAAACGCCTCAGCAGAGAGAACAATAGCAATGTATATGAGCTTGTGATTAGGGCATAAACTGCACCATACTCGGTGTTATTTAGTCAAATTTGTTTGTTGTTTACAGGTTGATAGTGATGTACTACCATGTATGCACGCCGAATAAAATTGTAGGAGATAATGATATATTTATAGATCAATGAAAAAGAT ]
[+] EMBL CB636917 [ GAAGGGAAGCCCACCGCGTCGCCATCATTAACTCCTCCTCTCCTCTCGTCTCCCTCGAAAGCACCACCGGATCCGACGACCCCCTCCTCCCCTTTCTCCCCTCCTCACGAAACCGCCTCGCCTTCCTCTTCTTTTCTTTTTCGCTCGCTTCGCATCGCTCACATGCCCCTGCCTGCCGCCGCAGACGGGGCGCCATGTCGCGTAGCGGGGTGGAGGTGGTCGTGAGCAGGGGTTGCTCCAGGCTCGTCCTCCCCGGGATGCAGCCTTCCTCCGCCTCCGCCGCTTCCTCCTCCTCCTTCTCGCGCGGCGGACATGGCGGCGGCGGCGACCGGAGGCCGCTGCCCG ATGGCCCCTTCGCCGGATTGGTCATCTG CGTCACCGGGCTATCCAAAGAGGCGAGGACTCAGGTGAAGGAGGCG ACTGANAGGATGGGAGGCGAGTACAGCGGGAGCCTGCATCCCAAGTGCACCCACCTA GTGGTTCAGAGCTTCGCCGGCCGCAAGTTTGAGCACGCGGTCAAGCATGGCGCGAAGAATGGCCTCTTTGTTGTAACACTTGGTTGGCTTGTGGATTGCGTG ]
[+] EMBL CB641255 [ GAAGGGAAGCCCACCGCGTGGCCATCATTAACTCCTCCTCTCCTCTCGTCTCCCTCGAAAGCACCACCGGATCCGACGACCCCCTCCTCCCCTTTCTCCCCTCCTCACGAAACCGCCTCGCCTTCCTCTTCTTTTCTTTTTCGCTCGCTTCGCATCGCTCACATGCCCCTGCCTGCCGCCGCAGACGGGGCGCCATGTCGCGTANCGGGGTGGAGGTGGTCGTGAGCAGGGGTTGCTCCAGGCTCGTCCTCCCCGGGATGCAACCTTCCTCCGCCTCCGCCGCTTCCTCCTCCTCCTTCTCGCGCGGCGGACATGGCGGCGGCGGCGACCGGAGGCCGCTGCCCG ATGGCCCCTTCGCCGGATTGGGCATCTGCCGT ACCGGGCTATCCAAA ]
[+] EMBL OSC190 [ ACCACCGGATCCGACGACCNCCTCCTCCCCTTTNTCCCCTCCTCACGAAACCGCCTCGCCTTCCTCTTCTTTTCTTTTTCGCTCGCTTCGCATCGCTCACATGCCCCTGCCTGCCGCCGCAGACGGGGCGCCATGTCGCGTA GGGNTGGAGGTNGTCGTGAGCAGGGGTTGCTCCAGGCTCGTCCTCCCCGGGATGCAGCCTTCCTNCGCCTCCGCCGCTTCCTCCTCCTCCTTCTCGCGCNGC GACATNGCGGCGGCGGCGACCGGA GCCG TGCCNGAATGGCCCCT ]
[+] EMBL AY224539 [ GCGGCGACCGGAGGCCGCTGCCCG ATGGCCCCTTCGCCGGATTGGTCATCTG CGTCACCGGGCTATCCAAAGA GCGAGGACTCAGGTGAAGGAGGCGAACTGAGAGGATGGGAGGCGAGTACAGCGGGAGCCTGCATCCCAAGTGCACCCACCTACGCGCAGCACAGCTTCGCCGGCCGCAAGTTTGAGCACGCGGTCAAGCATGGCGCGAAGAATGGCCTCTTTGTTGTAACACTTGGTTGGCTTGTGGATTGCGTGCGGAGGAGCATGAGGTTGGATGAATCGTTATATAGCATCAAGAACATTGGGGAGAATGGAATGCCACTCGGGGAGTTCAACCGGCTTGTCGGCGCTCCTGTTAGTGGGAATTCTTGCCTTCCACCGATGATGTTTCAGGAAAAAACATTTTCAGACACGACCGAAAAGCATCGGCTTCAGACATCTAGAAAAGAACATGACCATGATGAATTTCTCTTTACAAACGACTCGATCTACATTGACCCTGGGATATCTGGTGAAATGAGGAAGAA GTATCTGAATGCTGCTACTAGAGAAGGTGCAAAATTGTTGGACCACTGGTTTATTGGCTGTCATGCGACATATGTTGTGTGTGAGGACGCTTCTGTCAAGAGATATGTTGGTCATTCAGACAACATTGTAACTCCACTTTGGATATTGAAAACCGCAAAGGAAAAAGGTTTGCAGCGTCTTGTCCATTTGTCTTCGGACCTGGCTAGGCAGGTTGCCACGATTCTTGAAAATGCCCAGACATTTCAAGAGAATAGAAAAATTGGGGATGTTCCTTCTGTCAATTCAAACTCCAGTGGAGTACCATCAACCCAAGGGGAGATAGATGAAATTCATCAAGAGAGGCAAAAATTTGTTGAAGTAGCAAAGAAAAATGTCCGAGATCGCCGTGCTCGCCGTATGCAGTCATGTGAAGTACCAATCCATCCAATCACGCCTGTGAAACTTATGGAATCAATCTGTTGGACCGTATCTGAGCCAACTACGTCCGCATGCATTTATACGGAGTTTTCATGGTCAGACGATGCCTTTGAGCAACAAAGCACTACTTTCTTCGATGCGAATGGGGATGGCAAGGATGATCAGTCAAGCGATAGTTTCACCCGCCCACTAAGAGAAAGTGAGAAGAGTGAAGTGATCTTTAAGAACCACTTCCTTACCGTACTCTTCCCCATTGATCGTTTTGGTGAGCTTGGACCTTCCTCAAGGACATTCTTCAGCAATGGTGGTTTCACACGCATACAAGTGCTTGATCACATCTACAAC TTCTACCAGGAAAATATGTCTTCCGATGAGATAAATGTAGCCCTGCAAACGGATTCACGACATGCTGATCGACTTCGCTCGCTGTACGCAAGTACTGAATCAGCAGAAAGAGGTTTTGTAACATTCAAAAGAATTGATTTTTTGGGAAGCCGAAGAAGTTTTGAGGGGCT AAAACGCCTCAGCAGAGAGAACAATAGCAATGTATATGAGCTTGTGAT ]
[+] EMBL AK063852 [ AACATTTTCAGACACGACCGAAAAGCATCGGCTTCAGACATCTAGAAAAGAACATGACCATGATGAATTTCTCTTTACAAACGACTCGATCTACATTGACCCTGGGATATCTGGTGAAATGAGGAAGAAGGTATCTG ATGCTGCTACTAGAGAAGGTGCAAAATTGTTGGACCACTGGTTTATTGGCTGTCATGCGACATATGTTGTGTGTGAGGACGCTTCTGTCAAGAGATATGTTGGTCATTCAGACAACATTGTAACTCCACTTTGGATATTGAAAACCGCAAAGGAAAAAGGTTTGCAGCGTCTTGTCCATTTGTCTTCGGACCTGGCTAGGCAGGTTGCCACGATTCTTGAAAATGCCCAGACATTTCAAGAGAATAGAAAAATTGGGGATGTTCCTTCTGTCAATTCAAACTCCAGTGGAGTACCATCAACCCAAGGGGAGATAGATGAAATTCATCAAGAGAGGCAAAAATTTGTTGAAGTAGCAAAGAAAAATGTCCGAGATCGCCGTGCTCGCCGTATGCAGTCATGTGAAGTACCAATCCATCCAATCACGCCTGTGAAACTTATGGAATCAATCTGTTGGACCGTATCTGAGCCAACTACGTCCGCATGCATTTATACGGAGTTTTCATGGTCAGACGATGCCTTTGAGCAACAAAGCACTACTTTCTTCGATGCGAATGGGGATGGCAAGGATGATCAGTCAAGCGATAGTTTCACCCGCCCACTAAGAGAAAGTGAGAAGAGTGAAGTGATCTTTAAGAACCACTTCCTTACCGTACTCTTCCCCATTGATCGTTTTGGTGAGCTTGGACCTTCCTCAAGGACATTCTTCAGCAATGGTGGTTTCACACGCATACAAGTGCTTGATCACATCTACAAC TTCTACCAGGAAAATATGTCTTCCGATGAGATAAATGTAGCCCTGCAAACGGATTCACGACATGCTGATCGACTTCGCTCGCTGTACGCAAGTACTGAATCAGCAGAAAGAGGTTTTGTAACATTCAAAAGAATTGATTTTTTGGGAAGCCGAAGAAGTTTTGAGGGGCT AAAACGCCTCAGCAGAGAGAACAATAGCAATGTATATGAGCTTGTGATTAGGGCATAAACTGCACCATACTCGGTGTTATTTAGTCAAATTTGTTTGTTGTTTACAGGTTGATAGTGATGTACTACCATGTATGCACGCCGAATAAAATTGTAGGAGATAATGATATATTTATAGATCAATGAAAAAGATCATGTTGGGCA ]
[-] EMBL CB636918 [ GAACCACTTCTTTACCGTACTTTTCCCCATTGATCGTTTTGGTGAGCTTGGACTTTCCTCAAGGACATTCTTCAGCAATGGTGGTTTCACACGCATACAAGTGCTTGATCACATCTACAAC TTCTACCAGGAAAATATGTCTTCCGATGAGATAAATGTAGCCCTGCAAACGGATTCACGACATGCTGATCGACTTCGCTCGCTGTACGCAAGTATTGAATCAGCAGAAAGAGGTTTTGTAACATTCAAAAGAATTGATTTTTTGGGAAGCCGAAGAAGTTTTGAGGGGTT AAAACGCCTCAGCAGAGAGACCAATAGCAATGTATATGAGCTTGTGATTAGGGCATAAACTGCACCATACTCGGTGTTATTTAGTCAAATTTGTTTGTTGTTTACAGGTTGATAGTGATGTACTACCATGTATGCACGCCGAATAAAATTGTAGGAGATAATGATATATTTATAGATCAATGAAAAAGATC ]
[+] EMBL AU094371 [ CTTCCTCAAGGACATTCTTCAGCAATGGTGGTTTCACACGCATACAAGTGCTTGATCACATCTACAACTTTCTACCAGGAAAATATGTCTTCCGATGAGATAAATGTAGCCCTGCAAACGGATTCACGACATGCTGATCGACTTCGCTCGCTGTACGCAAGTACTGAATCAGCAGAAAGAGGTTTTGTAACATTCAAAAGAATTGATTTTTTGGGAAGCCGAAGAAGTTTTGAGGGGCT AAAACGCCTCAGCAGAGAGAACAATAGCAATGTATATGAGCTTGTGATTAGGGCATAAACTGCACCATACTCGGTGTTATTTAGTCAAATTTGTTTGTTGTTTACAGGTTGATAGTGATGTACTACCATGTATGCACGCCGAATAAAATTGTAGGAGATAATGATATATTTATAGATCAATGAAAAAGATCATGTTGGGCAAAAA]
clustalw multiple alignements is not computed in this case |
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||