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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11237#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1073 fasta sequence
[ATAGCTCCCGGCCTCCGAAGATGGAGACCTCCTCCTTCCTCCGCACCACCCTCCCCACCGCGAAGCCCCTCCCGGCGTTCCAGACCCTCGCACCCCGCCCCCGCCCCCGCCCGCTCCGCCGCTCCACCATCAGCGCGGCCATCACCCGAGGCCGCAAGGAGGACACGGTGGCCGCCGTCCGCGAGCAGCTGGAGGGCTGCTACCTCCTCGCCGGGATCCGCTACGAGGGCCTCACGGTGAAGCAGCTGCAGGGCATCCGCGACACCCTCCCGGAGACCTGCCGGCTGCTGGTGGCGAAGAACACGCTGGTGGGGAAGGCCATCGAGGGCACGCCGTGGGAGGCGCTCAAGCCGTGCATGAAGGGGATGAACGCGTGGCTGTTCGTCCACACCGAGGAGGTCCCCGCCGCGCTCAAGCCCTACCGCGCCTTCCAGAAGGAGGAGCGCCTCGAGGAGACCAACGACTTCGTCGGCGCGGTGTTCGAGGGCAAGTTCTACGCCCCCGGGGACTTCAAGGCGCTCGAGACAATGCCCAGCCGCGCCGAGGTGTACGCCAAGCTGCTCGGCTCGCTGCAGGGGCCCGCGACCTCCGTCGTCACCACGCTGCAGGCGCCGGCCAGGGACGTCGTCTCCGTGCTCTCGGCGTACGTGCGCAAGCTCGAGCAGGAGGTCGGCGCCGCCTGATGGCTGTTGAGAGATGGTTTTGTGGCTTCGTTTCTCTCATCTCACTCATTTCTTGTAGAATTCCTGTACTTTTACTGCCTCACGTTTGAATTGAATCACAAAAGTTTTACCTCTTACAACGCATGCCTACTGGTCTGATTTCATAAGATTACCGAGTTCTGATGTTATTAGGATTACGTTGCGTACTTAGAGGGAATGCTTGTTCCACAACTAGTGTTTTGATAATTTAATTTTACCTGTAGAGACTACAGAGATCAAAGTTTAGTAGGTTGAGGGGCAATGGCAATGCACAATTAGAATGGTCAATAACTACTAGTGCTTGTGTAGTTGTACCATCAATCAGTGTATCCAGGTTTACAACAAAGTTGTTCAGAGCAGTATGATGAGATG]
[+] EMBL AK069064 [ATAGCTCCCGGCCTCCGAAGATGGAGACCTCCTCCTTCCTCCGCACCACCCTCCCCACCGCGAAGCCCCTCCCGGCGTTCCAGACCCTCGCACCCCGCCCCCGCCCCCGCCCGCTCCGCCGCTCCACCATCAGCGCGGCCATCACCCGAGGCCGCAAGGAGGACACGGTGGCCGCCGTCCGCGAGCAGCTGGAGGGCTGCTACCTCCTCGCCGGGATCCGCTACGAGGGCCTCACGGTGAAGCAGCTACAGGGCATCCGCGACACCCTCCCGGAGACCTGCCGGCTGCTGGTGGCGAAGAACACGCTGGTGGGGAAGGCCATCGAGGGCACGCCGTGGGAGGCGCTCAAGCCGTGCATGAAGGGGATGAACGCGTGGCTGTTCGTCCACACCGAGGAGGTCCCCGCCGCGCTCAAGCCCTACCGCGCCTTCCAGAAGGAGGAGCGCCTCGAGGAGACCAACGACTTCGTCGGCGCGGTGTTCGAGGGCAAGTTCTACGCCCCCGGGGACTTCAAGGCGCTCGAGACAATGCCCAGCCGCGCCGAGGTGTACGCCAAGCTGCTCGGCTCGCTGCAGGGGCCCGCGACCTCCGTCGTCACCACGCTGCAGGCGCCGGCCAGGGACGTCGTCTCCGTGCTCTCGGCGTACGTGCGCAAGCTCGAGCAGGAGGTCGGCGCCGCCTGATGGCTGTTGAGAGATGGTTTTGTGGCTTCGTTTCTCTCATCTCACTCATTTCTTGTAGAATTCCTGTACTTTTACTGCCTCACGTTTGAATTGAATCACAAAAGTTTTACCTCTTACAACGCATGCCTACTGGTCTGATTTCATAAGATTACCGAGTTCTGATGTTATTAGGATTACGTTGCGTACTTAGAGGGAATGCTTGTTCCACAACTAGTGTTTTGATAATTTAATTTTACCTGTAGAGACTACAGAGATCAAAGTTTAGTAGGTTGAGGGGCAATGGCAATGCACAATTAGAATGGTCAATAACTACTAGTGCTTGTGTAGTTGTACCATCAATCAGTGTATCCAGGTTTACAACAAAGTTGTTCAGAGCAGTATGATGAGATG]
[+] EMBL AK061592 [ GGCCTCCGAAGATGGAGACCTCCTCCTTCCTCCGCACCACCCTCCCCACCGCGAAGCCCCTCCCGGCGTTCCAGACCCTCGCACCCCGCCCCCGCCCCCGCCCGCTCCGCCGCTCCACCATCAGCGCGGCCATCACCCGAGGCCGCAAGGAGGACACGGTGGCCGCCGTCCGCGAGCAGCTGGAGGGCTGCTACCTCCTCGCCGGGATCCGCTACGAGGGCCTCACGGTGAAGCAGCTGCAGGGCATCCGCGACACCCTCCCGGAGACCTGCCGGCTGCTGGTGGCGAAGAACACGCTGGTGGGGAAGGCCATCGAGGGCACGCCGTGGGAGGCGCTCAAGCCGTGCATGAAGGGGATGAACGCGTGGCTGTTCGTCCACACCGAGGAGGTCCCCGCCGCGCTCAAGCCCTACCGCGCCTTCCAGAAGGAGGAGCGCCTCGAGGGGACCAACGACTTCGTCGGCGCGGTGTTCGAGGGCAAGTTCTACGCCCCCGGGGACTTCAAGGCGCTCGAGACAATGCCCAGCCGCGCCGAGGTGTACGCCAAGCTGCTCGGCTCGCTGCAGGGGCCCGCGACCTCCGTCGTCACCACGCTGCAGGCGCCGGCCAGGGACGTCGTCTCCGTGCTCTCGGCGTACGTGCGCAAGCTCGAGCAGGAGGTCGGCGCCGCCTGATGGCTGTTGAGAGATGGTTTTGTGGCTTCGTTTCTCTCATCTCACTCATTTCTTGTAGAATTCCTGTACTTTTACTGCCTCACGTTTGAATTGAATCACAAAAGTTT ]
[+] EMBL CA754029 [ GCCTCCGAAGATGGAGACCTCCTCCTTCCTCCGCACCACCCTCCCCACCGCGAAGCCCCTCCCGGCGTTCCAGACCCTCGCACCCCGCCCCCGCCCCCGCCCGCTCCGCCGCTCCACCATCAGCGCGGCCATCACCCGAGGCCGCAAGGAGGACACGGTGGCCGCCGTCCGCGAGCAGCTGGAGGGCTGCTACCTCCTCGCCGGGATCCGCTACGAGGGCCTCACGGTGAAGCAGCTGCAGGGCATCCGCGACACCCTCCCGGAGACCTGCCGGCTGCTGGTGGCGAAGAACACGCTGGTGGGGAAGGCCATCGAGGGCACGCCGTGGGAGGCGCTCAAGCCGTGCATGAAGGGGATGAACGCGTGGCTGTTCGTCCACACCGAGGAGGTCCCCGCCGCGCTCAAGCCCTACCGCGCCTTCCAGAAGGAGGAGCGCCTCGAGGAGACCAACGACTTCGTCGGCGCGGTGTTCGAGGGCAAGTTCTACGCCCCCGGGGACTTCAAGGCGCTCGAGACAATGCCCAGCCGCGCCGAGGTGTACGCCAAGCTGCTCGGCTCGCTGCAGGGGCCCGCGACCTCCGTCGTCACCACGCTGCAGGCGCCG ]
consensusID : consensus_11237#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 836 fasta sequence
[CCTCCGAAGATGGAGACCTCCTCCTTCCTCCGCACCACCCTCCCCACCGCGAAGCCCCTCCCGGCGTTCCAGACCCTCGCACCCCGCCCCCGCCCCCGCCCGCTCCGCCGCTCCACCATCAGCGCGGCCATCACCCGAGGCCGCAAGGAGGACACGGTGGCCGCCGTCCGCGAGCAGCTGGAGGGCTGCTACCTCCTCGCCGGGATCCGCTACGAGGGCCTCACGGTGAAGCAGCTGCAGGGCATCCGCGACACCCTCCCGGAGACCTGCCGGCTGCTGGTGGCGAAGAACACGCTGGTGGGGAAGGCCATCGAGGGCACGCCGTGGGAGGCGCTCAAGCCGTGCATGAAGGGGATGAACGCGTGGCTGTTCGTCCACACCGAGGAGGTCCCCGCCGCGCTCAAGCCCTACCGCGCCTTCCAGAAGGAGGAGCGCCTCGAGGAGACCAACGA-CTTCGTCGGCGCG-GTGTTCGAGGGCAAGTTCTACGCCCCCGGGGACTTCAAGGCGCTCGAGACAATGCCCAGCCGCGCCGAGGTGTACGCCAAGCTGCTCGGCTCGCTGCAGGGGCCCGCGACCTCCGTCGTCACCACGCTGCAGGCGCCGGCCAGGGACGTCGTCTCCGTGCTCTCGGCGTACGTGCGCAAGCTCGAGCAGGAGGTCGGCGCCGCCTGATGGCTGTTGAGAGATGGTTTTGTGGCTTCGTTTCTCTCATCTCACTCATTTCTTGTAGAATTCCTGTACTTTTACTGCCTCACGTTTGAATTGAATCACAAAAGTTTTACCTCTTTAAAAAAAAAAAAAACAAAACGACTCGACTCGGCCGAANTCGGCACGNG]
[+] EMBL AF095709 [CCTCCGAAGATGGAGACCTCCTCCTTCCTCCGCACCACCCTCCCCACCGCGAAGCCCCTCCCGGCGTTCCAGACCCTCGCACCCCGCCCCCGCCCCCGCCCGCTCCGCCGCTCCACCATCAGCGCGGCCATCACCCGAGGCCGCAAGGAGGACACGGTGGCCGCCGTCCGCGAGCAGCTGGAGGGCTGCTACCTCCTCGCCGGGATCCGCTACGAGGGCCTCACGGTGAAGCAGCTGCAGGGCATCCGCGACACCCTCCCGGAGACCTGCCGGCTGCTGGTGGCGAAGAACACGCTGGTGGGGAAGGCCATCGAGGGCACGCCGTGGGAGGCGCTCAAGCCGTGCATGAAGGGGATGAACGCGTGGCTGTTCGTCCACACCGAGGAGGTCCCCGCCGCGCTCAAGCCCTACCGCGCCTTCCAGAAGGAGGAGCGCCTCGAGGAGACCAACGA CTTCGTCGGCGCG GTGTTCGAGGGCAAGTTCTACGCCCCCGGGGACTTCAAGGCGCTCGAGACAATGCCCAGCCGCGCCGAGGTGTACGCCAAGCTGCTCGGCTCGCTGCAGGGGCCCGCGACCTCCGTCGTCACCACGCTGCAGGCGCCGGCCAGGGACGTCGTCTCCGTGCTCTCGGCGTACGTGCGCAAGCTCGAGCAGGAGGTCGGCGCCGCCTGATGGCTGTTGAGAGATGGTTTTGTGGCTTCGTTTCTCTCATCTCACTCATTTCTTGTAGAATTCCTGTACTTTTACTGCCTCACGTTTGAATTGAATCACAAAAGTTTTACCTCTTTAAAAAAAAAAAAAA ]
[+] EMBL CF324831 [ CAGGGCATCCGCGACACCCTCCCGGAGACCTGCCGGCTGCTGGTGGCGAAGAACACGCTGGTGGGGAAGGCCATCGAGGGCACGCCGTGTGA ]
[+] EMBL BI811599 [ ACCGCGCCTTCCAGAAGGAGGAGCGCCTCGAGGAGACC ACGATCTTCGTCGGCTCGTGTGTTCGAGGGCAAGTTCTACGCCCCCGGGGACTTCAAGGCGCTCGAGACAATGCCCAGCCGCTCCGAGGTGTACGCCAA CTGCTCGGCTCGCTGCAGGGGCCC CGACCTCCGTCGTCACCACGCTGCAGGCGCCGGCCAGGGACGTCGTCTCCGTGCTCTCGGCGTACGTGCGCAAGCTCGAGCAGGAGGTCGGCGCCGCCTGATGGCTGTTGAGAGATGGTTTTGTGGCTTCGTTTCTCTCATCTCACTCATTTCTTGTAGAATTCCTGTACTTTTACTGCCTCACGTTTGAATTGAATCAC AAAGTTTTAC ]
[-] EMBL BE228892 [ ccccttnGAGGAGACCAANGA NTTCGTCGGCGCG GTGTTCGAGGGCAAGTTCTACGCCCCCGGGGANTTCAAGGCGTTGGAGACAATGCCCAGCCGCGCGGAGGTGNACGCCAAGCNGCTCGGCTCG TGCAGGGGCCCGCGACNTCTGTNGTCACCACGCTGCAGGCGCCGGCCAGGGANGTTGTCTCCGTGCTCTCGGCGAANGTGCGCAAGCTCGAGCAGGAGGTNGGCGCCGCCTGATGGCTGTTGAGAGATGGTTTAGTGGCTTCGTTTCTCTCATCTCACTCATTTCTNGTAGAATTCCTGNACTTTTACTGCCTNACGNNTGAATTGAATCACAAAAGTT ]
[-] EMBL AA753159 [ CCAACGA TTNGTCGGCGCG GTGTTCGAGGGCAA TTNTACGCCCCCGGGGACTTCAAGGCGNNANAGACAATGCCCAGCCGCGCCGAGGTGTACGCCAAGCTGCTCGGCTCGCTGCAGGGGCCCGCGACCTCCGTCGTCACCACGCTGCAGGCGCCGGCCAGGGACGTCGTCTCCGTGCTCTCGGCGTACGTGCGCAAGCTCGAGCAGGAGGTCGGCGCCGCCTGATGGCTGTTGAGAGATGGTTTTGTGGCTTCGTTTCTCTCATCTCACTCATTTCTTGTAGAATTCCTGTACTTTTACTGCCTCACGTGGGAATTGAATCACAAAAGTTTTACCTCTTAAAAAAAAAAAAAAACAAAACGACTCGACTCGGCCGAANTCGGCACGNG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11237#0 ATAGCTCCCGGCCTCCGAAGATGGAGACCTCCTCCTTCCTCCGCACCACCCTCCCCACCG 60
consensus_11237#1 -----------CCTCCGAAGATGGAGACCTCCTCCTTCCTCCGCACCACCCTCCCCACCG 49
*************************************************
consensus_11237#0 CGAAGCCCCTCCCGGCGTTCCAGACCCTCGCACCCCGCCCCCGCCCCCGCCCGCTCCGCC 120
consensus_11237#1 CGAAGCCCCTCCCGGCGTTCCAGACCCTCGCACCCCGCCCCCGCCCCCGCCCGCTCCGCC 109
************************************************************
consensus_11237#0 GCTCCACCATCAGCGCGGCCATCACCCGAGGCCGCAAGGAGGACACGGTGGCCGCCGTCC 180
consensus_11237#1 GCTCCACCATCAGCGCGGCCATCACCCGAGGCCGCAAGGAGGACACGGTGGCCGCCGTCC 169
************************************************************
consensus_11237#0 GCGAGCAGCTGGAGGGCTGCTACCTCCTCGCCGGGATCCGCTACGAGGGCCTCACGGTGA 240
consensus_11237#1 GCGAGCAGCTGGAGGGCTGCTACCTCCTCGCCGGGATCCGCTACGAGGGCCTCACGGTGA 229
************************************************************
consensus_11237#0 AGCAGCTGCAGGGCATCCGCGACACCCTCCCGGAGACCTGCCGGCTGCTGGTGGCGAAGA 300
consensus_11237#1 AGCAGCTGCAGGGCATCCGCGACACCCTCCCGGAGACCTGCCGGCTGCTGGTGGCGAAGA 289
************************************************************
consensus_11237#0 ACACGCTGGTGGGGAAGGCCATCGAGGGCACGCCGTGGGAGGCGCTCAAGCCGTGCATGA 360
consensus_11237#1 ACACGCTGGTGGGGAAGGCCATCGAGGGCACGCCGTGGGAGGCGCTCAAGCCGTGCATGA 349
************************************************************
consensus_11237#0 AGGGGATGAACGCGTGGCTGTTCGTCCACACCGAGGAGGTCCCCGCCGCGCTCAAGCCCT 420
consensus_11237#1 AGGGGATGAACGCGTGGCTGTTCGTCCACACCGAGGAGGTCCCCGCCGCGCTCAAGCCCT 409
************************************************************
consensus_11237#0 ACCGCGCCTTCCAGAAGGAGGAGCGCCTCGAGGAGACCAACGACTTCGTCGGCGCGGTGT 480
consensus_11237#1 ACCGCGCCTTCCAGAAGGAGGAGCGCCTCGAGGAGACCAACGACTTCGTCGGCGCGGTGT 469
************************************************************
consensus_11237#0 TCGAGGGCAAGTTCTACGCCCCCGGGGACTTCAAGGCGCTCGAGACAATGCCCAGCCGCG 540
consensus_11237#1 TCGAGGGCAAGTTCTACGCCCCCGGGGACTTCAAGGCGCTCGAGACAATGCCCAGCCGCG 529
************************************************************
consensus_11237#0 CCGAGGTGTACGCCAAGCTGCTCGGCTCGCTGCAGGGGCCCGCGACCTCCGTCGTCACCA 600
consensus_11237#1 CCGAGGTGTACGCCAAGCTGCTCGGCTCGCTGCAGGGGCCCGCGACCTCCGTCGTCACCA 589
************************************************************
consensus_11237#0 CGCTGCAGGCGCCGGCCAGGGACGTCGTCTCCGTGCTCTCGGCGTACGTGCGCAAGCTCG 660
consensus_11237#1 CGCTGCAGGCGCCGGCCAGGGACGTCGTCTCCGTGCTCTCGGCGTACGTGCGCAAGCTCG 649
************************************************************
consensus_11237#0 AGCAGGAGGTCGGCGCCGCCTGATGGCTGTTGAGAGATGGTTTTGTGGCTTCGTTTCTCT 720
consensus_11237#1 AGCAGGAGGTCGGCGCCGCCTGATGGCTGTTGAGAGATGGTTTTGTGGCTTCGTTTCTCT 709
************************************************************
consensus_11237#0 CATCTCACTCATTTCTTGTAGAATTCCTGTACTTTTACTGCCTCACGTTTGAATTGAATC 780
consensus_11237#1 CATCTCACTCATTTCTTGTAGAATTCCTGTACTTTTACTGCCTCACGTTTGAATTGAATC 769
************************************************************
consensus_11237#0 ACAAAAGTTTTACCTCTTACAACGCATGCCTACTGGTCTGATTTCATAAGATTACCGAGT 840
consensus_11237#1 ACAAAAGTTTTACCTCTTTAAAAAAAAAAAAAACAAAACGACTCGACTCGG---CCGAAN 826
****************** ** * * ** * * * ****
consensus_11237#0 TCTG-ATGTTATTAGGATTACGTTGCGTACTTAGAGGGAATGCTTGTTCCACAACTAGTG 899
consensus_11237#1 TCGGCACGNG-------------------------------------------------- 836
** * * *
consensus_11237#0 TTTTGATAATTTAATTTTACCTGTAGAGACTACAGAGATCAAAGTTTAGTAGGTTGAGGG 959
consensus_11237#1 ------------------------------------------------------------
consensus_11237#0 GCAATGGCAATGCACAATTAGAATGGTCAATAACTACTAGTGCTTGTGTAGTTGTACCAT 1019
consensus_11237#1 ------------------------------------------------------------
consensus_11237#0 CAATCAGTGTATCCAGGTTTACAACAAAGTTGTTCAGAGCAGTATGATGAGATG 1073
consensus_11237#1 ------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||