cluster # 11245

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 11245 cluster # 11245 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11245#0 length = 336 sequences # 7

consensus_11245#1 length = 251 sequences # 1

consensusID : consensus_11245#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 336
fasta sequence

                              [TGGAACAACGGCGGCAACAACACGAGGCTGATCGTGCGCGCCGGGTACC-G-GCCATCGTCTCGTCGGCGTCGTTCTACTACCTCGACTGCGGCCACGGCGACTTCGCCGGCAACGACTCCGCCTACGACGACCCGAGGAGCGACTACGGCACCAGCGGCGGGTCGTGGTGCGGACCGTACAAGACGTGGCAGCGGGTGTACGAC-TACGACGTCGCGGGCGGGCTCACCGCCGAGGAGGCCAGGCTGGTGGTCGGCGGGGAGGTGGCGATGTGGACGGAGCAGGTGGACGCGGCGGTGC-TCGACGGCAAGGGTNTNGCCGAGGGCGTCGGCGATTGCG]

[+] EMBL OSS3420A             [TGGAACAACGGCGGCAACAACACGAGGCTGATCGTGCGCGCCGGGTACC G GCCATCGTCTCGTCGGCGTCGTTCTACTACCTCGACTGCGGCCACGGCGACTTCGCCGGCAACGACTCCGCCTACGACGACCCGAGGAGCGACTACGGCACCAGCGGCGGGTCGTGGTGCGGACCGTACAAGACGTGGCAGCGGGTGTACGAC TACGACGTCGCGGGCGGGCTCACCGCCGAGGAGGCCAGGCTGGTGGTCGGCGGGGAGGTGGCGATGTGGACGGAGCAGGTGGACGCGGCGGTGC TCGACGGCAAGGGTNTNGCCGAGGGCGTCGGCGATTGCG]
[+] EMBL OSS1612A             [TGGAACAACGGCGGCAACAACACGAGGCTGATCGTGCGCGCCGGGTACCGG GCCATCGTCTCGTCGGCGTCGTTCTACTACCTCGACTGCGGCCACGGCGACTTCGCCGGCAACGACTCCGCCTACGACGACCCGAGGAGCGACTACGGCACCAGCGGCGGGTCGTGGTGCGGACCGTACAAGACGTGGCAGCGGGTGTACGAC TACNACGTCGCGGGCGGGCTCACCGCCGAGGAGGCCAGGCTGGTGGTCGGCGGGGAGGTGGCGATGTGGACGGAGCAGGTGGACGCGGCGGTGCTTCGACGGCAGGGTTTTNGCCGAGGG              ]
[+] EMBL OSS2448A             [TGGAACAACGGCGGCAACAACACGAGGCTGATCGTGCGCGCCGGGTACC G GCCATCGTCTCGTCGGCGTCGTTCTACTACCTCGACTGCGGCCACGGCGACTTCGCCGGCAACGACTCCGCCTACGACGACCCGAGGAGCGACTACGGCACCAGCGGCGGGTCGTGGTGCGGACCGTACAAGACGTGGCAGCGGGTGTACGAC TACGACGTCGCGGGCGGGCTCACCGCCGAGGAGGCCAGGCTGGTGGTCGGCGNGGAGGTGGCGATGTGGACGGAGCAGGTGGA                                                   ]
[+] EMBL OSS1721A             [TGGAACAACGGCGGCAACAACACGAGGCTGATCGTGCGCGCCGGGTACC G GCCATCGTCTCGTCGGCGTCGTTCTACTACCTCGACTGCGGCCACGGCGACTTCGCNGGCAACGACTCCGCCTACGACGACCCGAGGAGCGACTACGGCACCANCGGCGGGTCGTGGTGCGGACCGTACAANACGTTGCANCGGGTNTACGAC TACNACGTCGCGGGNGGGNTCAACG CGAGGAGGCCAAGNTTGTNGTCGGCGGGGAng                                                                            ]
[+] EMBL OSS3276A             [TGGAACAACGGCGGCAACAACACGAGGCTGATCGTGCGCGCCGGGTACCGG GCCATCGTCTCGTCGGCGTCGTTCTACTACCTCGACTGCGGCCACGGCGACTTCGCCGGCAACGACTCCGNCTACGACGACCCGAGGAGCGACTACGGCACCAGCGGCGNGTCGTGGTGCGGACCGTACAAGACGTGGCAGCGGGTGTACGAC TACGACGTCGCGGGCGGGCTCACCGCCGAGGAGGNCAGG                                                                                               ]
[+] EMBL OSS1546A             [TGGAACAACGGCGGCAACAACACGAGGCTGATCGTGCGCGCCGGGTACC G GCCATCGTCTCGTCGGCGTCGTTCTACTACCTCGACTGCGGCCACGGCGACTTCGCCGGCAACGACTCCGCCTACGACGACCCGAGGAGCGACTACGGCACCAGCGGCGGGTCGTGGTGCGGACCGTACAAGACGTTGCAACGGGTTTACGACTTACGACGTCGCGGGCGGGCTNANCGCC                                                                                                           ]
[+] EMBL OSS2356A             [TGGAACAACGGCGGCAACAACACGAGGCTGATCGTGCGCGCCGGGTACC GNGCCATCGTCTCGTCGGCGTCGTTCTACTACCTCGACTGCGGCCACGGCGACTTCGCCGGCAACGACTCCGCCTACGACGACCCGAGGAGCGACTACGGCACCAGCGGCGGGTCGTGGTGCGGACCGTACAAGACGTGGCAGCGGGT                                                                                                                                              ]




>consensus_11245#0
TGGAACAACGGCGGCAACAACACGAGGCTGATCGTGCGCGCCGGGTACCGGCCATCGTCT
CGTCGGCGTCGTTCTACTACCTCGACTGCGGCCACGGCGACTTCGCCGGCAACGACTCCG
CCTACGACGACCCGAGGAGCGACTACGGCACCAGCGGCGGGTCGTGGTGCGGACCGTACA
AGACGTGGCAGCGGGTGTACGACTACGACGTCGCGGGCGGGCTCACCGCCGAGGAGGCCA
GGCTGGTGGTCGGCGGGGAGGTGGCGATGTGGACGGAGCAGGTGGACGCGGCGGTGCTCG
ACGGCAAGGGTNTNGCCGAGGGCGTCGGCGATTGCG

consensusID : consensus_11245#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 251
fasta sequence

                              [TGGAACAACGGCGGCAACAACACGAGNCTGATCGTGCGCNCCGGGTACCGCCAATCGTCTCGTNGGCATCNTTNTACNACCTCGACTGCGGCCACGGCGACTTCGCNCNANACGACTCCGCCTACGACGACCCGAGGAGCGACTACGGCACCAGCGGCGGGTCGTGGTGCGGACCGTACAAGACGTGGCAGCGGGTNTACGACTACGACGTCGCGGGCNGGCTCACCCGAAGGAGGCCAGGATGGTGGTCG]

[+] EMBL OS1321787            [TGGAACAACGGCGGCAACAACACGAGNCTGATCGTGCGCNCCGGGTACCGCCAATCGTCTCGTNGGCATCNTTNTACNACCTCGACTGCGGCCACGGCGACTTCGCNCNANACGACTCCGCCTACGACGACCCGAGGAGCGACTACGGCACCAGCGGCGGGTCGTGGTGCGGACCGTACAAGACGTGGCAGCGGGTNTACGACTACGACGTCGCGGGCNGGCTCACCCGAAGGAGGCCAGGATGGTGGTCG]




>consensus_11245#1
TGGAACAACGGCGGCAACAACACGAGNCTGATCGTGCGCNCCGGGTACCGCCAATCGTCT
CGTNGGCATCNTTNTACNACCTCGACTGCGGCCACGGCGACTTCGCNCNANACGACTCCG
CCTACGACGACCCGAGGAGCGACTACGGCACCAGCGGCGGGTCGTGGTGCGGACCGTACA
AGACGTGGCAGCGGGTNTACGACTACGACGTCGCGGGCNGGCTCACCCGAAGGAGGCCAG
GATGGTGGTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11245#0      TGGAACAACGGCGGCAACAACACGAGGCTGATCGTGCGCGCCGGGTACCGGCCATCGTCT 60
consensus_11245#1      TGGAACAACGGCGGCAACAACACGAGNCTGATCGTGCGCNCCGGGTACCGCCAATCGTCT 60
                       ************************** ************ ********** * *******

consensus_11245#0      CGTCGGCGTCGTTCTACTACCTCGACTGCGGCCACGGCGACTTCGCCGGCAACGACTCCG 120
consensus_11245#1      CGTNGGCATCNTTNTACNACCTCGACTGCGGCCACGGCGACTTCGCNCNANACGACTCCG 120
                       *** *** ** ** *** ****************************     *********

consensus_11245#0      CCTACGACGACCCGAGGAGCGACTACGGCACCAGCGGCGGGTCGTGGTGCGGACCGTACA 180
consensus_11245#1      CCTACGACGACCCGAGGAGCGACTACGGCACCAGCGGCGGGTCGTGGTGCGGACCGTACA 180
                       ************************************************************

consensus_11245#0      AGACGTGGCAGCGGGTGTACGACTACGACGTCGCGGGCGGGCTCACCGCCGAGGAGGCCA 240
consensus_11245#1      AGACGTGGCAGCGGGTNTACGACTACGACGTCGCGGGCNGGCTCACC-CGAAGGAGGCCA 239
                       **************** ********************* ******** *  *********

consensus_11245#0      GGCTGGTGGTCGGCGGGGAGGTGGCGATGTGGACGGAGCAGGTGGACGCGGCGGTGCTCG 300
consensus_11245#1      GGATGGTGGTCG------------------------------------------------ 251
                       ** *********                                                

consensus_11245#0      ACGGCAAGGGTNTNGCCGAGGGCGTCGGCGATTGCG 336
consensus_11245#1      ------------------------------------