These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11246#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1376 fasta sequence [TGTGGCCACCTATTTCGTCAAGTGGTTGGGGCGCAGCACGCTGGGCTTGTCGTACGGGCTCGCCATCAGCGAGGCATGCATCGCGCCGGCGATGCCCAGCACCACGGCGAGGGCCGGTGGGGTGTTCCTTCCAATAGTCAAGTCGCTATCTCTTTCGGCTGGCAGCAAGCCGAACGACCCATCGGCGAGGAAGCTGGGCTCCTACCTTGTGCAGTCTCAGTTACAGGCATCTGGTAACTCAAGTGCTCTCTTCCTGACTGCTGCAGCACAAAATCTCTTGTGTCTGAAGTTAGCTGAGGAGATTGGTGTTAAGATTGCAAACCCATGGATATCTTGGTTTAAGGTTGCTAGTTTGCCTGCCATCATTTCTCTCTTAGCGACACCTTATTTGTTATACAAAATATTCCCACCTGAAATAAAGGACACTCCTGAGGCCCCTGCAATAGCTGCACAAAAACTGAAGAACATGGGACCAGTAACAAGAAATGAATGGATCATGGTTGCTACAATGATTCTTGCTGTTTCACTGTGGATTTTTGGGGATACTATCGGTGTGTCAAGTGTTGTTGCTGCGATGATTGGTCTTTCAATTCTTCTTCTGCTTGGGGTTCTGAACTGGGAAGATTGCCTGAATGAAAAATCTGCATGGGACACATTAGCTTGGTTTGCTATTCTAGTTGGAATGGCAGGGCAGCTCACGAACCTTGGAATTGTATCATGGATGTCAAATTGTGTTGCAAAAGTTCTCCAGTCTTTCTCATTGAGTTGGCCTGCAGCATTTGGTGTTCTTCAGGCCTCCTATTTCTTTATTCACTATCTCTTTGCAAGCCAAACAGCACATGTTGGAGCTTTGTATTCAGCATTTCTTGCGATGCATTTAGCAGCTGGCGTTCCAGCTATACTGTCGGCACTTGCTTTGACATACAATTCAAATCTCTTTGGTGCACTGACACATTATAGTAGTGGGCAGTCTGCAGTATACTATGGAGCGGGGTATGTTGATCTTCCTGATGTATTC-AAACTGGGTTTTACAACAGCAGCAATCAATGCTGTGATATGGGGAGTCGTCGGTACATTTTGGTGGAAGTTTTTAGGGCTTTATTGAGTCATTGCAAGTGTTAAGTTGACCAAAAGTGTTCCTTACTACACCTGTAATTCATGGCTCCCTTTCTGGAGTGGTAGTCATTTTTTCTTCAGAGGAGTTTGATGAGTGCATAATAATGGAACGATGTTCCTCATTAGAAGTCTTGAACATGATACACTTGTACAACCCAGAAGGGTTCTCATAGGCGTTTTGTACAACTCCCATGCATTTCTCATGAACGAAATTAACTGCAGGAATGAGTCTTGATTCCTTGAGCATATTGTTCATGTAC] [+] EMBL BF430574 [TGTGGCCACCTATTTCGTCAAGTGGTTGGGGCGCAGCACGCTGGGCTTGTCGTACGGGCTCGCCATCAGCGAGGCATGCATCGCGCCGGCGATGCCCAGCACCACGGCGAGGGCCGGTGGGGTGTTCCTTCCAATAGTCAAGTCGCTATCTCTTTCGGCTGGCAGCAAGCCGAACGACCCATCGGCGAGGAAGCTGGGCTCCTACCTTGTGCAGTCTCAGTTACAGGCATCTGGTAACTCAAGTGCTCTCTTCCTGACTGCTGCAGCACAAAATCTCTTGTGTCTGAAGTTAGCTGAGGAGATTGGTGTTAAGATTGCAAACCCATGGATATCTTGGTTTAAGGTTGCTAGTTTGCCTGCCATCATTTCTCTCTTAGCGACACCTTATTTGTTATACAAAATATTCCCACCTGAAATAAAGGACACTCCTGAGGCCCCTGCAATAGCTGCACAAAAACTGAAGAACATGGGACCAGTAACAAGAAATGAATGGATCATGGTTGCTACAATGATTCTTGCTGTTTCACTGTGGATTTTTGGGGATACTATCGGTGTGTCAAGTGTTGTTGCTGCGATGATTGGTCTTTCAATTCTTCTTCTGCTTGGGGTTCTGAACTGGGAAGATTGCCTGAATGAAAAATCTGCATGGGACACATTAGCTTGGTTTGCTATTCTAGTTGG ] [+] EMBL CB679474 [ TGTGCAGTCTCAGTTACAGGCATCTGGTAACTCAAGTGCTCTCTTCCTGACTGCTGCAGCACAAAATCTCTTGTGTCTGAAGTTAGCTGAGGAGATTGGTGTTAAGATTGCAAACCCATGGATATCTTGGTTTAAGGTTGCTAGTTTGCCTGCCATCATTTCTCTCTTAGCGACACCTTATTTGTTATACAAAATATTCCCACCTGAAATAAAGGACACTCCTGAGGCCCCTGCAATAGCTGCACAAAAACTGAAGAACATGGGACCAGTAACAAGAAATGAATGGATCATGGTTGCTACAATGATTCTTGCTGTTTCACTGTGGATTTTTGGGGATACTATCGGTGTGTCAAGTGTTGTTGCTGCGATGATTGGTCTTTCAATTCTTCTTCTGCTTGGGGTTCTGAACTGGGAAGATTGCCTGAATGAAAAATCTGCATGGGACACATTAGCTTGGTTTGCTATTCTAGTTGGAATGGCAGGGCAGCTCACGAACCTTGGAATTGTATCATGGATGTCAAATTGTGTTGCAAAAGTTCTCCAGTCTTTCTCATTGAGTTGGCCTGCAGCATTTGGTGTTCTTCAGGCCTCCTATTTCTTTATTCACTATCTCTTTGCAAGCCAAACAGCACATGTTGGAGCTTTGTATTCAGCATTTCTTGCGATGCATTTAGCAGCTGGCGTTCCAGCTATACTGTCGGCACTTGCTTTGACATACAATTCAAATCTCTTTGGTGCACTGACACATTATAGTAGTGGGCAGTCTGCAGTATACTATGGAGCGGGGTATGTTGATCTTCCTGATGTATTC AAACTGGGTTT ] [+] EMBL CF324535 [ TCTTAGCGACACCTTATTTGTTATACAAAATATTCCCACCTGAAATAAAGGACACTCCTGAGGCCCCTGCAATAGCTGCACAAAAACTGAAGAACATGGGACCAGTAACAAGAAATGAATGGATCATGGTTGCTACAATGATTCTTGCTGTTTCACTGTGGATTTTTGGGGATACTATCGGTGTGTCAAGTGTTGTTGCTGCGATGATTGGTCTTTCAATTCTTCTTCTGCTTGGGGTTCTGAACTGGGAAGATTGCCTGAATGAAAAATCTGCATGGGACACATTAGCTTGGTTTGCTATTCTAGTTGGAATGGCAGGGCAGCTCACGAACCTTGGAATTGTATCATGGATGTCAAATTGTGTTGCAAAAGTTCTCCAGTCTTTCTCATTGAGTTGGCCTGCAGCATTTGGTGTTCTTCAGGCCTCCTATTTCTTTAT ] [+] EMBL AK060342 [ TATACAGAATATTCCCACCTGAAATAAAGGACACTCCTGAGGCCCCTGCAATAGCTGCACAAAAACTGAAGAACATGGGACCAGTAACAAGAAATGAATGGATCATGGTTGCTACAATGATTCTTGCTGTTTCACTGTGGATTTTTGGGGATACTATCGGTGTGTCAAGTGTTGTTGCTGCGATGATTGGTCTTTCAATTCTTCTTCTGCTTGGGGTTCTGAACTGGGAAGATTGCCTGAATGAAAAATCTGCATGGGACACATTAGCTTGGTTTGCTATTCTAGTTGGAATGGCAGGGCAGCTCACGAACCTTGGAATTGTATCATGGATGTCAAATTGTGTTGCAAAAGTTCTCCAGTCTTTCTCATTGAGTTGGCCTGCAGCATTTGGTGTTCTTCAGGCCTCCTATTTCTTTATTCACTATCTCTTTGCAAGCCAAACAGCACATGTTGGAGCTTTGTATTCAGCATTTCTTGCGATGCATTTAGCAGCTGGCGTTCCAGCTATACTGTCGGCACTTGCTTTGACATACAATTCAAATCTCTTTGGTGCACTGACACATTATAGTAGTGGGCAGTCTGCAGTATACTATGGAGCGGGGTATGTTGATCTTCCTGATGTATTC AAACTGGGTTTTACAACAGCAGCAATCAATGCTGTGATATGGGGAGTCGTCGGTACATTTTGGTGGAAGTTTTTAGGGCTTTATTGAGTCATTGCAAGTGTTAAGTTGACCAAAAGTGTTCCTTACTACACCTGTAATTCATGGCTCCCTTTCTGGAGTGGTAGTCATTTTTTCTTCAGAGGAGTTTGATGAGTGCATAATAATGGAACGATGTTCCTCATTAGAAGTCTTGAACATGATACACTTGTACAACCCAGAAGGGTTCTCATAGGCGTTTTGTACAACTCCCATGCATTTCTCATGAACGAAATTAACTGCAGGAATGAGTCTTGA ] [+] EMBL CA767479 [ AACTGGGAAGATTGCCTGAATGAAAAATCTGCATGGGACACATTAGCTTGGTTTGCTATTCTAGTTGGAATGGCAGGGCAGCTCACGAACCTTGGAATTGTATCATGGATGTCAAATTGTGTTGCAAAAGTTCTCCAGTCTTTCTCATTGAGTTGGCCTGCAGCATTTGGTGTTCTTCAGGCCTCCTATTTCTTTATTCACTATCTCTTTGCAAGCCAAACAGCACATGTTGGAGCTTTGTATTCAGCATTTCTTGCGATGCATTTAGCAGCTGGCATTCCAGCTATACTGTCGGCACTTGCTTTGGCATACAATTCAAATCTCTTTGGTGCACTGACACATTATAGTAGTGGGCAGTCTGCAGTATACTATGGAGCGGGGTATGTTGATCTTCCTGATGTATTC AAACTGGGTTTTACAACAGCAGCAATCAATGCTGTGATATGGGGAGTCGTCGGTACATTTTGGTGGAAGTTTTTAGGGCTTTATTGAGTCATTGCAAGTGTTAAGTTGACCAAAAGTGTTCCTTACTACACCTGTAATTCATGGCTCCCTTTCTGGAGTGGTAGTCATTTTTTCTTCAGAGGAGTTTGATGAGTGCATAATAATGGAACGATGTTCCTCATTAGAAGTCTTGAACATGATACACTTGTACAACCCAGAANGGTTCTCATAGGCGTTTTGTACAACTCCCATGCATTTCTCATGAACGAAATTAACTGCAGGAATGAGTCTTGATTC ] [-] EMBL CB640546 [ GCGGGGTATGTTGATCTTCCTGATGTATTCAAAACTGGGTTTTACAACAGCAGCAATCAATGCTGTGATATGGGGAGTCGTCGGTACATTTTGGTGGAAGTTTTTAGGGCTTTATTGAGTCATTGCAAGTGTTAAGTTGACCAAAAGTGTTCCTTACTACACCTGTAATTCATGGCTCCCTTTCTGGAGTGGTAGTCATTTTTTCTTCAGAGGAGTTTGATGAGTGCATAATAATGGAACGATGTTCCTCATTAGAAGTCTTGAACATGATACACTTGTACAACCCAGAAGGGTTCTCATAGGCGTTTTGTACAACTCCCATGCATTTCTCATGAACGAAATTAACTGCAGGAATGAGTCTTGATTCCTTGAGCATATTGTTCATGTAC] [+] EMBL BI811718 [ AATCAATGCTGTGATATGGGGAGTCGTCGGTACATTTTGGTGGAAGTTTTTAGGGCTTTATTGAGTCATTGCAAGTGTTAAGTTGACCCAAAGTGTTCCTTACTACACCTGTAATTCATGGCTCCCTTTCTGGAGTGGTAGTCATTTTTTCTTCAGAGGAGTTTGATGAGTGCATAATAATGGAACGATGTTCCTCATTAGAAGTCTTGAACATGATACACTTGTAC ACCCAGAAGGGTTCTCATAGGCGTTTTGTAC ACTCCCATGCATTTCTCATGAACGAAATTAA ] consensusID : consensus_11246#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 149 fasta sequence [GCCACCTATTTCGTCAGTGGTTGGGGCGCNNNACGCTGGGCTTGTCNNACGGGCTCGCCATCAGCGAGGCATGCATCGCGNCGGCGATGCNNNGCACCACNGCGAGGGCCGGTGGGGTGTTCCTTCCAATAGTCAAGTCGNTATCTCTT] [+] EMBL CF195864 [GCCACCTATTTCGTCAGTGGTTGGGGCGCNNNACGCTGGGCTTGTCNNACGGGCTCGCCATCAGCGAGGCATGCATCGCGNCGGCGATGCNNNGCACCACNGCGAGGGCCGGTGGGGTGTTCCTTCCAATAGTCAAGTCGNTATCTCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11246#0 TGTGGCCACCTATTTCGTCAAGTGGTTGGGGCGCAGCACGCTGGGCTTGTCGTACGGGCT 60 consensus_11246#1 ----GCCACCTATTTCGTCA-GTGGTTGGGGCGCNNNACGCTGGGCTTGTCNNACGGGCT 55 **************** ************* ************** ******* consensus_11246#0 CGCCATCAGCGAGGCATGCATCGCGCCGGCGATGCCCAGCACCACGGCGAGGGCCGGTGG 120 consensus_11246#1 CGCCATCAGCGAGGCATGCATCGCGNCGGCGATGCNNNGCACCACNGCGAGGGCCGGTGG 115 ************************* ********* ******* ************** consensus_11246#0 GGTGTTCCTTCCAATAGTCAAGTCGCTATCTCTTTCGGCTGGCAGCAAGCCGAACGACCC 180 consensus_11246#1 GGTGTTCCTTCCAATAGTCAAGTCGNTATCTCTT-------------------------- 149 ************************* ******** consensus_11246#0 ATCGGCGAGGAAGCTGGGCTCCTACCTTGTGCAGTCTCAGTTACAGGCATCTGGTAACTC 240 consensus_11246#1 ------------------------------------------------------------ consensus_11246#0 AAGTGCTCTCTTCCTGACTGCTGCAGCACAAAATCTCTTGTGTCTGAAGTTAGCTGAGGA 300 consensus_11246#1 ------------------------------------------------------------ consensus_11246#0 GATTGGTGTTAAGATTGCAAACCCATGGATATCTTGGTTTAAGGTTGCTAGTTTGCCTGC 360 consensus_11246#1 ------------------------------------------------------------ consensus_11246#0 CATCATTTCTCTCTTAGCGACACCTTATTTGTTATACAAAATATTCCCACCTGAAATAAA 420 consensus_11246#1 ------------------------------------------------------------ consensus_11246#0 GGACACTCCTGAGGCCCCTGCAATAGCTGCACAAAAACTGAAGAACATGGGACCAGTAAC 480 consensus_11246#1 ------------------------------------------------------------ consensus_11246#0 AAGAAATGAATGGATCATGGTTGCTACAATGATTCTTGCTGTTTCACTGTGGATTTTTGG 540 consensus_11246#1 ------------------------------------------------------------ consensus_11246#0 GGATACTATCGGTGTGTCAAGTGTTGTTGCTGCGATGATTGGTCTTTCAATTCTTCTTCT 600 consensus_11246#1 ------------------------------------------------------------ consensus_11246#0 GCTTGGGGTTCTGAACTGGGAAGATTGCCTGAATGAAAAATCTGCATGGGACACATTAGC 660 consensus_11246#1 ------------------------------------------------------------ consensus_11246#0 TTGGTTTGCTATTCTAGTTGGAATGGCAGGGCAGCTCACGAACCTTGGAATTGTATCATG 720 consensus_11246#1 ------------------------------------------------------------ consensus_11246#0 GATGTCAAATTGTGTTGCAAAAGTTCTCCAGTCTTTCTCATTGAGTTGGCCTGCAGCATT 780 consensus_11246#1 ------------------------------------------------------------ consensus_11246#0 TGGTGTTCTTCAGGCCTCCTATTTCTTTATTCACTATCTCTTTGCAAGCCAAACAGCACA 840 consensus_11246#1 ------------------------------------------------------------ consensus_11246#0 TGTTGGAGCTTTGTATTCAGCATTTCTTGCGATGCATTTAGCAGCTGGCGTTCCAGCTAT 900 consensus_11246#1 ------------------------------------------------------------ consensus_11246#0 ACTGTCGGCACTTGCTTTGACATACAATTCAAATCTCTTTGGTGCACTGACACATTATAG 960 consensus_11246#1 ------------------------------------------------------------ consensus_11246#0 TAGTGGGCAGTCTGCAGTATACTATGGAGCGGGGTATGTTGATCTTCCTGATGTATTCAA 1020 consensus_11246#1 ------------------------------------------------------------ consensus_11246#0 ACTGGGTTTTACAACAGCAGCAATCAATGCTGTGATATGGGGAGTCGTCGGTACATTTTG 1080 consensus_11246#1 ------------------------------------------------------------ consensus_11246#0 GTGGAAGTTTTTAGGGCTTTATTGAGTCATTGCAAGTGTTAAGTTGACCAAAAGTGTTCC 1140 consensus_11246#1 ------------------------------------------------------------ consensus_11246#0 TTACTACACCTGTAATTCATGGCTCCCTTTCTGGAGTGGTAGTCATTTTTTCTTCAGAGG 1200 consensus_11246#1 ------------------------------------------------------------ consensus_11246#0 AGTTTGATGAGTGCATAATAATGGAACGATGTTCCTCATTAGAAGTCTTGAACATGATAC 1260 consensus_11246#1 ------------------------------------------------------------ consensus_11246#0 ACTTGTACAACCCAGAAGGGTTCTCATAGGCGTTTTGTACAACTCCCATGCATTTCTCAT 1320 consensus_11246#1 ------------------------------------------------------------ consensus_11246#0 GAACGAAATTAACTGCAGGAATGAGTCTTGATTCCTTGAGCATATTGTTCATGTAC 1376 consensus_11246#1 -------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||