|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11246#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1376 fasta sequence
[TGTGGCCACCTATTTCGTCAAGTGGTTGGGGCGCAGCACGCTGGGCTTGTCGTACGGGCTCGCCATCAGCGAGGCATGCATCGCGCCGGCGATGCCCAGCACCACGGCGAGGGCCGGTGGGGTGTTCCTTCCAATAGTCAAGTCGCTATCTCTTTCGGCTGGCAGCAAGCCGAACGACCCATCGGCGAGGAAGCTGGGCTCCTACCTTGTGCAGTCTCAGTTACAGGCATCTGGTAACTCAAGTGCTCTCTTCCTGACTGCTGCAGCACAAAATCTCTTGTGTCTGAAGTTAGCTGAGGAGATTGGTGTTAAGATTGCAAACCCATGGATATCTTGGTTTAAGGTTGCTAGTTTGCCTGCCATCATTTCTCTCTTAGCGACACCTTATTTGTTATACAAAATATTCCCACCTGAAATAAAGGACACTCCTGAGGCCCCTGCAATAGCTGCACAAAAACTGAAGAACATGGGACCAGTAACAAGAAATGAATGGATCATGGTTGCTACAATGATTCTTGCTGTTTCACTGTGGATTTTTGGGGATACTATCGGTGTGTCAAGTGTTGTTGCTGCGATGATTGGTCTTTCAATTCTTCTTCTGCTTGGGGTTCTGAACTGGGAAGATTGCCTGAATGAAAAATCTGCATGGGACACATTAGCTTGGTTTGCTATTCTAGTTGGAATGGCAGGGCAGCTCACGAACCTTGGAATTGTATCATGGATGTCAAATTGTGTTGCAAAAGTTCTCCAGTCTTTCTCATTGAGTTGGCCTGCAGCATTTGGTGTTCTTCAGGCCTCCTATTTCTTTATTCACTATCTCTTTGCAAGCCAAACAGCACATGTTGGAGCTTTGTATTCAGCATTTCTTGCGATGCATTTAGCAGCTGGCGTTCCAGCTATACTGTCGGCACTTGCTTTGACATACAATTCAAATCTCTTTGGTGCACTGACACATTATAGTAGTGGGCAGTCTGCAGTATACTATGGAGCGGGGTATGTTGATCTTCCTGATGTATTC-AAACTGGGTTTTACAACAGCAGCAATCAATGCTGTGATATGGGGAGTCGTCGGTACATTTTGGTGGAAGTTTTTAGGGCTTTATTGAGTCATTGCAAGTGTTAAGTTGACCAAAAGTGTTCCTTACTACACCTGTAATTCATGGCTCCCTTTCTGGAGTGGTAGTCATTTTTTCTTCAGAGGAGTTTGATGAGTGCATAATAATGGAACGATGTTCCTCATTAGAAGTCTTGAACATGATACACTTGTACAACCCAGAAGGGTTCTCATAGGCGTTTTGTACAACTCCCATGCATTTCTCATGAACGAAATTAACTGCAGGAATGAGTCTTGATTCCTTGAGCATATTGTTCATGTAC]
[+] EMBL BF430574 [TGTGGCCACCTATTTCGTCAAGTGGTTGGGGCGCAGCACGCTGGGCTTGTCGTACGGGCTCGCCATCAGCGAGGCATGCATCGCGCCGGCGATGCCCAGCACCACGGCGAGGGCCGGTGGGGTGTTCCTTCCAATAGTCAAGTCGCTATCTCTTTCGGCTGGCAGCAAGCCGAACGACCCATCGGCGAGGAAGCTGGGCTCCTACCTTGTGCAGTCTCAGTTACAGGCATCTGGTAACTCAAGTGCTCTCTTCCTGACTGCTGCAGCACAAAATCTCTTGTGTCTGAAGTTAGCTGAGGAGATTGGTGTTAAGATTGCAAACCCATGGATATCTTGGTTTAAGGTTGCTAGTTTGCCTGCCATCATTTCTCTCTTAGCGACACCTTATTTGTTATACAAAATATTCCCACCTGAAATAAAGGACACTCCTGAGGCCCCTGCAATAGCTGCACAAAAACTGAAGAACATGGGACCAGTAACAAGAAATGAATGGATCATGGTTGCTACAATGATTCTTGCTGTTTCACTGTGGATTTTTGGGGATACTATCGGTGTGTCAAGTGTTGTTGCTGCGATGATTGGTCTTTCAATTCTTCTTCTGCTTGGGGTTCTGAACTGGGAAGATTGCCTGAATGAAAAATCTGCATGGGACACATTAGCTTGGTTTGCTATTCTAGTTGG ]
[+] EMBL CB679474 [ TGTGCAGTCTCAGTTACAGGCATCTGGTAACTCAAGTGCTCTCTTCCTGACTGCTGCAGCACAAAATCTCTTGTGTCTGAAGTTAGCTGAGGAGATTGGTGTTAAGATTGCAAACCCATGGATATCTTGGTTTAAGGTTGCTAGTTTGCCTGCCATCATTTCTCTCTTAGCGACACCTTATTTGTTATACAAAATATTCCCACCTGAAATAAAGGACACTCCTGAGGCCCCTGCAATAGCTGCACAAAAACTGAAGAACATGGGACCAGTAACAAGAAATGAATGGATCATGGTTGCTACAATGATTCTTGCTGTTTCACTGTGGATTTTTGGGGATACTATCGGTGTGTCAAGTGTTGTTGCTGCGATGATTGGTCTTTCAATTCTTCTTCTGCTTGGGGTTCTGAACTGGGAAGATTGCCTGAATGAAAAATCTGCATGGGACACATTAGCTTGGTTTGCTATTCTAGTTGGAATGGCAGGGCAGCTCACGAACCTTGGAATTGTATCATGGATGTCAAATTGTGTTGCAAAAGTTCTCCAGTCTTTCTCATTGAGTTGGCCTGCAGCATTTGGTGTTCTTCAGGCCTCCTATTTCTTTATTCACTATCTCTTTGCAAGCCAAACAGCACATGTTGGAGCTTTGTATTCAGCATTTCTTGCGATGCATTTAGCAGCTGGCGTTCCAGCTATACTGTCGGCACTTGCTTTGACATACAATTCAAATCTCTTTGGTGCACTGACACATTATAGTAGTGGGCAGTCTGCAGTATACTATGGAGCGGGGTATGTTGATCTTCCTGATGTATTC AAACTGGGTTT ]
[+] EMBL CF324535 [ TCTTAGCGACACCTTATTTGTTATACAAAATATTCCCACCTGAAATAAAGGACACTCCTGAGGCCCCTGCAATAGCTGCACAAAAACTGAAGAACATGGGACCAGTAACAAGAAATGAATGGATCATGGTTGCTACAATGATTCTTGCTGTTTCACTGTGGATTTTTGGGGATACTATCGGTGTGTCAAGTGTTGTTGCTGCGATGATTGGTCTTTCAATTCTTCTTCTGCTTGGGGTTCTGAACTGGGAAGATTGCCTGAATGAAAAATCTGCATGGGACACATTAGCTTGGTTTGCTATTCTAGTTGGAATGGCAGGGCAGCTCACGAACCTTGGAATTGTATCATGGATGTCAAATTGTGTTGCAAAAGTTCTCCAGTCTTTCTCATTGAGTTGGCCTGCAGCATTTGGTGTTCTTCAGGCCTCCTATTTCTTTAT ]
[+] EMBL AK060342 [ TATACAGAATATTCCCACCTGAAATAAAGGACACTCCTGAGGCCCCTGCAATAGCTGCACAAAAACTGAAGAACATGGGACCAGTAACAAGAAATGAATGGATCATGGTTGCTACAATGATTCTTGCTGTTTCACTGTGGATTTTTGGGGATACTATCGGTGTGTCAAGTGTTGTTGCTGCGATGATTGGTCTTTCAATTCTTCTTCTGCTTGGGGTTCTGAACTGGGAAGATTGCCTGAATGAAAAATCTGCATGGGACACATTAGCTTGGTTTGCTATTCTAGTTGGAATGGCAGGGCAGCTCACGAACCTTGGAATTGTATCATGGATGTCAAATTGTGTTGCAAAAGTTCTCCAGTCTTTCTCATTGAGTTGGCCTGCAGCATTTGGTGTTCTTCAGGCCTCCTATTTCTTTATTCACTATCTCTTTGCAAGCCAAACAGCACATGTTGGAGCTTTGTATTCAGCATTTCTTGCGATGCATTTAGCAGCTGGCGTTCCAGCTATACTGTCGGCACTTGCTTTGACATACAATTCAAATCTCTTTGGTGCACTGACACATTATAGTAGTGGGCAGTCTGCAGTATACTATGGAGCGGGGTATGTTGATCTTCCTGATGTATTC AAACTGGGTTTTACAACAGCAGCAATCAATGCTGTGATATGGGGAGTCGTCGGTACATTTTGGTGGAAGTTTTTAGGGCTTTATTGAGTCATTGCAAGTGTTAAGTTGACCAAAAGTGTTCCTTACTACACCTGTAATTCATGGCTCCCTTTCTGGAGTGGTAGTCATTTTTTCTTCAGAGGAGTTTGATGAGTGCATAATAATGGAACGATGTTCCTCATTAGAAGTCTTGAACATGATACACTTGTACAACCCAGAAGGGTTCTCATAGGCGTTTTGTACAACTCCCATGCATTTCTCATGAACGAAATTAACTGCAGGAATGAGTCTTGA ]
[+] EMBL CA767479 [ AACTGGGAAGATTGCCTGAATGAAAAATCTGCATGGGACACATTAGCTTGGTTTGCTATTCTAGTTGGAATGGCAGGGCAGCTCACGAACCTTGGAATTGTATCATGGATGTCAAATTGTGTTGCAAAAGTTCTCCAGTCTTTCTCATTGAGTTGGCCTGCAGCATTTGGTGTTCTTCAGGCCTCCTATTTCTTTATTCACTATCTCTTTGCAAGCCAAACAGCACATGTTGGAGCTTTGTATTCAGCATTTCTTGCGATGCATTTAGCAGCTGGCATTCCAGCTATACTGTCGGCACTTGCTTTGGCATACAATTCAAATCTCTTTGGTGCACTGACACATTATAGTAGTGGGCAGTCTGCAGTATACTATGGAGCGGGGTATGTTGATCTTCCTGATGTATTC AAACTGGGTTTTACAACAGCAGCAATCAATGCTGTGATATGGGGAGTCGTCGGTACATTTTGGTGGAAGTTTTTAGGGCTTTATTGAGTCATTGCAAGTGTTAAGTTGACCAAAAGTGTTCCTTACTACACCTGTAATTCATGGCTCCCTTTCTGGAGTGGTAGTCATTTTTTCTTCAGAGGAGTTTGATGAGTGCATAATAATGGAACGATGTTCCTCATTAGAAGTCTTGAACATGATACACTTGTACAACCCAGAANGGTTCTCATAGGCGTTTTGTACAACTCCCATGCATTTCTCATGAACGAAATTAACTGCAGGAATGAGTCTTGATTC ]
[-] EMBL CB640546 [ GCGGGGTATGTTGATCTTCCTGATGTATTCAAAACTGGGTTTTACAACAGCAGCAATCAATGCTGTGATATGGGGAGTCGTCGGTACATTTTGGTGGAAGTTTTTAGGGCTTTATTGAGTCATTGCAAGTGTTAAGTTGACCAAAAGTGTTCCTTACTACACCTGTAATTCATGGCTCCCTTTCTGGAGTGGTAGTCATTTTTTCTTCAGAGGAGTTTGATGAGTGCATAATAATGGAACGATGTTCCTCATTAGAAGTCTTGAACATGATACACTTGTACAACCCAGAAGGGTTCTCATAGGCGTTTTGTACAACTCCCATGCATTTCTCATGAACGAAATTAACTGCAGGAATGAGTCTTGATTCCTTGAGCATATTGTTCATGTAC]
[+] EMBL BI811718 [ AATCAATGCTGTGATATGGGGAGTCGTCGGTACATTTTGGTGGAAGTTTTTAGGGCTTTATTGAGTCATTGCAAGTGTTAAGTTGACCCAAAGTGTTCCTTACTACACCTGTAATTCATGGCTCCCTTTCTGGAGTGGTAGTCATTTTTTCTTCAGAGGAGTTTGATGAGTGCATAATAATGGAACGATGTTCCTCATTAGAAGTCTTGAACATGATACACTTGTAC ACCCAGAAGGGTTCTCATAGGCGTTTTGTAC ACTCCCATGCATTTCTCATGAACGAAATTAA ]
consensusID : consensus_11246#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 149 fasta sequence
[GCCACCTATTTCGTCAGTGGTTGGGGCGCNNNACGCTGGGCTTGTCNNACGGGCTCGCCATCAGCGAGGCATGCATCGCGNCGGCGATGCNNNGCACCACNGCGAGGGCCGGTGGGGTGTTCCTTCCAATAGTCAAGTCGNTATCTCTT]
[+] EMBL CF195864 [GCCACCTATTTCGTCAGTGGTTGGGGCGCNNNACGCTGGGCTTGTCNNACGGGCTCGCCATCAGCGAGGCATGCATCGCGNCGGCGATGCNNNGCACCACNGCGAGGGCCGGTGGGGTGTTCCTTCCAATAGTCAAGTCGNTATCTCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11246#0 TGTGGCCACCTATTTCGTCAAGTGGTTGGGGCGCAGCACGCTGGGCTTGTCGTACGGGCT 60
consensus_11246#1 ----GCCACCTATTTCGTCA-GTGGTTGGGGCGCNNNACGCTGGGCTTGTCNNACGGGCT 55
**************** ************* ************** *******
consensus_11246#0 CGCCATCAGCGAGGCATGCATCGCGCCGGCGATGCCCAGCACCACGGCGAGGGCCGGTGG 120
consensus_11246#1 CGCCATCAGCGAGGCATGCATCGCGNCGGCGATGCNNNGCACCACNGCGAGGGCCGGTGG 115
************************* ********* ******* **************
consensus_11246#0 GGTGTTCCTTCCAATAGTCAAGTCGCTATCTCTTTCGGCTGGCAGCAAGCCGAACGACCC 180
consensus_11246#1 GGTGTTCCTTCCAATAGTCAAGTCGNTATCTCTT-------------------------- 149
************************* ********
consensus_11246#0 ATCGGCGAGGAAGCTGGGCTCCTACCTTGTGCAGTCTCAGTTACAGGCATCTGGTAACTC 240
consensus_11246#1 ------------------------------------------------------------
consensus_11246#0 AAGTGCTCTCTTCCTGACTGCTGCAGCACAAAATCTCTTGTGTCTGAAGTTAGCTGAGGA 300
consensus_11246#1 ------------------------------------------------------------
consensus_11246#0 GATTGGTGTTAAGATTGCAAACCCATGGATATCTTGGTTTAAGGTTGCTAGTTTGCCTGC 360
consensus_11246#1 ------------------------------------------------------------
consensus_11246#0 CATCATTTCTCTCTTAGCGACACCTTATTTGTTATACAAAATATTCCCACCTGAAATAAA 420
consensus_11246#1 ------------------------------------------------------------
consensus_11246#0 GGACACTCCTGAGGCCCCTGCAATAGCTGCACAAAAACTGAAGAACATGGGACCAGTAAC 480
consensus_11246#1 ------------------------------------------------------------
consensus_11246#0 AAGAAATGAATGGATCATGGTTGCTACAATGATTCTTGCTGTTTCACTGTGGATTTTTGG 540
consensus_11246#1 ------------------------------------------------------------
consensus_11246#0 GGATACTATCGGTGTGTCAAGTGTTGTTGCTGCGATGATTGGTCTTTCAATTCTTCTTCT 600
consensus_11246#1 ------------------------------------------------------------
consensus_11246#0 GCTTGGGGTTCTGAACTGGGAAGATTGCCTGAATGAAAAATCTGCATGGGACACATTAGC 660
consensus_11246#1 ------------------------------------------------------------
consensus_11246#0 TTGGTTTGCTATTCTAGTTGGAATGGCAGGGCAGCTCACGAACCTTGGAATTGTATCATG 720
consensus_11246#1 ------------------------------------------------------------
consensus_11246#0 GATGTCAAATTGTGTTGCAAAAGTTCTCCAGTCTTTCTCATTGAGTTGGCCTGCAGCATT 780
consensus_11246#1 ------------------------------------------------------------
consensus_11246#0 TGGTGTTCTTCAGGCCTCCTATTTCTTTATTCACTATCTCTTTGCAAGCCAAACAGCACA 840
consensus_11246#1 ------------------------------------------------------------
consensus_11246#0 TGTTGGAGCTTTGTATTCAGCATTTCTTGCGATGCATTTAGCAGCTGGCGTTCCAGCTAT 900
consensus_11246#1 ------------------------------------------------------------
consensus_11246#0 ACTGTCGGCACTTGCTTTGACATACAATTCAAATCTCTTTGGTGCACTGACACATTATAG 960
consensus_11246#1 ------------------------------------------------------------
consensus_11246#0 TAGTGGGCAGTCTGCAGTATACTATGGAGCGGGGTATGTTGATCTTCCTGATGTATTCAA 1020
consensus_11246#1 ------------------------------------------------------------
consensus_11246#0 ACTGGGTTTTACAACAGCAGCAATCAATGCTGTGATATGGGGAGTCGTCGGTACATTTTG 1080
consensus_11246#1 ------------------------------------------------------------
consensus_11246#0 GTGGAAGTTTTTAGGGCTTTATTGAGTCATTGCAAGTGTTAAGTTGACCAAAAGTGTTCC 1140
consensus_11246#1 ------------------------------------------------------------
consensus_11246#0 TTACTACACCTGTAATTCATGGCTCCCTTTCTGGAGTGGTAGTCATTTTTTCTTCAGAGG 1200
consensus_11246#1 ------------------------------------------------------------
consensus_11246#0 AGTTTGATGAGTGCATAATAATGGAACGATGTTCCTCATTAGAAGTCTTGAACATGATAC 1260
consensus_11246#1 ------------------------------------------------------------
consensus_11246#0 ACTTGTACAACCCAGAAGGGTTCTCATAGGCGTTTTGTACAACTCCCATGCATTTCTCAT 1320
consensus_11246#1 ------------------------------------------------------------
consensus_11246#0 GAACGAAATTAACTGCAGGAATGAGTCTTGATTCCTTGAGCATATTGTTCATGTAC 1376
consensus_11246#1 --------------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||