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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11249#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1327 fasta sequence
[TCAGTCCTACCTTGTCTTCCATTTTTCACAAATCGCAAGCAAAGCCCCACACCAAAATCCACCCACGAAGGCCGAAGACGACGAGGCAAGGCAACGTCGGTGTTGTGAGGGGGACACACACAAACACTCGACCTTCGAGAGATTTCCGAGCGGCAGCAATGGATCTCTGGGAGAGGGCGCGGGCCTTCGCCGGGGAGGCGGCGAAGCGGT-CGCAGGAGCTGTCGGCGGAGGCGGCCAAGCGCTCGTCGGCGCTGGTGTCGGAGACGGCGAAGAAGTCCAAGGAGATCTTCTCGGAGACCGCGACCAAGTCGCGGGA-GATCGCGGCCGAGGCCACCAAGCAGGCCGACCTCCTCGCCGGCCAGATCAAGCGCCTCTCCACCGACCTCCCCGTCCCCTCCATCCCCGCGATCCCGCCCATCCCCACCGCCGTCGCGCCGGAGCCGGACGCCGCGGAGCTCGAGCGCTACGGCATCACCGAAGACCTCCGCGAGTTCGTCAAGGGCATGACTATCAGCACCTTCCGCGACTTCCCCTTGCAAGATGAGCCGGAGATGTCGGATGTGCCCACGGTATCGAACGTGCGTCAGGATCTGAATGAGTGGCAGGCCAGGCACGCCACTCTCGTCCTCTCCGCCGTCAAGGAAATTTCAAAGTTCAGATATGAGTTGTGTCCACGATACATGAAAGAGCGTAAATTCTGGAGGGTTTATTTCTTGCTAGTAAACAACTACACATCCCTCTATGAGAACAAAT-ATTTTGAGGAGCTGAAAGTAAAAGCAGAGGAGGAAAAAATGGATGCCA-AGAAGGAAGTAACAGAGACCTCACAAGCTACAACTGCAGAACATAAAGACATGAAGGTGCAAAGCAAGACTTCAACTTCAACAAATCCA-GAGCATGATTTGGATGTTTTCCTTCTGGGAGATCTAGGCAGTGATGA-TGAGGGTCCTGATGGTGATGATGATGGGTTAGATGATGACTTCGATAAGATAGATGGCACTTCAGGCTTAGAGAGTGATGATGATGATGACAAGGAAAAAGCAGCAGGCAAGGCAGAAAGTGCA-AAGGAGTAGCTTGCAGAGCTGGTGATCAATATGATATGAAGTGCTTTCCCAGATCTACACATGCTTATCATGACAACGAAGGCTCTAGCACGCAGCTTACTGCACTAGTCCAGCTGCTATTGTATAATAGATGGTTGCATCTATCCATTCATTTTTCTCCCACTGAAGCAATGCTGCTTTCGTTGTTGCATTTTTCTTGTCCAAGATTTAGAAGGCTCTATTGTTTTTCCGTTTTCTGGAGCCATCTAGGGTGCTTTGCATATGCC]
[+] EMBL AK101892 [TCAGTCCTACCTTGTCTTCCATTTTTCACAAATCGCAAGCAAAGCCCCACACCAAAATCCACCCACGAAGGCCGAAGACGACGAGGCAAGGCAACGTCGGTGTTGTGAGGGGGACACACACAAACACTCGACCTTCGAGAGATTTCCGAGCGGCAGCAATGGATCTCTGGGAGAGGGCGCGGGCCTTCGCCGGGGAGGCGGCGAAGCGGT CGCAGGAGCTGTCGGCGGAGGCGGCCAAGCGCTCGTCGGCGCTGGTGTCGGAGACGGCGAAGAAGTCCAAGGAGATCTTCTCGGAGACCGCGACCAAGTCGCGGGA GATCGCGGCCGAGGCCACCAAGCAGGCCGACCTCCTCGCCGGCCAGATCAAGCGCCTCTCCACCGACCTCCCCGTCCCCTCCATCCCCGCGATCCCGCCCATCCCCACCGCCGTCACGCCGGAGCCGGACGCCGCGGAGCTCGAGCGCTACGGCATCACCGAAGACCTCCGCGAGTTCGTCAAGGGCATGACTATCAGCACCTTCCGCGACTTCCCCTTGCAAGATGAGCCGGAGATGTCGGATGTGCCCACGGTATCGAACGTGCGTCAGGATCTGAATGAGTGGCAGGCCAGGCACGCCACTCTCGTCCTCTCCGCCGTCAAGGAAATTTCAAAGTTCAGATATGAGTTGTGTCCACGATACATGAAAGAGCGTAAATTCTGGAGGGTTTATTTCTTGCTAGTAAACAACTACACATCCCTCTATGAGAACAAAT ATTTTGAGGAGCTGAAAGTAAAAGCAGAGGAGGAAAAAATGGATGCCA AGAAGGAAGTAACAGAGACCTCACAAGCTACAACTGCAGAACATAAAGACATGAAGGTGCAAAGCAAGACTTCAACTTCAACAAATCCA GAGCATGATTTGGATGTTTTCCTTCTGGGAGATCTAGGCAGTGATGA TGAGGGTCCTGATGGTGATGATGATGGGTTAGATGATGACTTCGATAAGATAGATGGCACTTCAGGCTTAGAGAGTGATGATGATGATGACAAGGAAAAAGCAGCAGGCAAGGCAGAAAGTGCA AAGGAGTAGCTTGCAGAGCTGGTGATCAATATGATATGAAGTGCTTTCCCAGATCTACACATGCTTATCATGACAACGAAGGCTCTAGCACGCAGCTTACTGCACTAGTCCAGCTGCTATTGTATAATAGATGGTTGCATCTATCCATTCATTTTTCTCCCACTGAAGCAATGCTGCTTTCGTTGTTGCATTTTTCTTGTCCAAGATTTAGAAGGCTCTATTGTTTTTCCGTTTTCTGGAGCCATCTAGGGTGCTTTGCATATGCC]
[+] EMBL AK107913 [ TCTTCCATTTTTCACAAATCGCAAGCAAAGCCCCACACCAAAATCCACCCACGAAGGCCGAAGACGACGAGGCAAGGCAACGTCGGTGTTGTGAGGGGGACACACACAAACACTCGACCTTCGAGAGATTTCCGAGCGGCAGCAATGGATCTCTGGGAGAGGGCGCGGGCCTTCGCCGGGGAGGCGGCGAAGCGGT CGCAGGAGCTGTCGGCGGAGGCGGCCAAGCGCTCGTCGGCGCTGGTGTCGGAGACGGCGAAGAAGTCCAAGGAGATCTTCTCGGAGACCGCGACCAAGTCGCGGGA GATCGCGGCCGAGGCCACCAAGCAGGCCGACCTCCTCGCCGGCCAGATCAAGCGCCTCTCCACCGACCTCCCCGTCCCCTCCATCCCCGCGATCCCGCCCATCCCCACCGCCGTCGCGCCGGAGCCGGACGCCGCGGAGCTCGAGCGCTACGGCATCACCGAAGACCTCCGCGAGTTCGTCAAGGGCATGACTATCAGCACCTTCCGCGACTTCCCCTTGCAAGATGAGCCGGAGATGTCGGATGTGCCCACGGTATCGAACGTGCGTCAGGATCTGAATGAGTGGCAGGCCAGGCACGCCACTCTCGTCCTCTCCGCCGTCAAGGAAATTTCAAAGTTCAGATATGAGTTGTGTCCACGATACATGAAAGAGCGTAAATTCTGGAGGGTTTATTTCTTGCTAGTAAACAACTACACATCCCTCTATGAGAACAAAT ATTTTGAGGAGCTGAAAGTAAAAGCAGAGGAGGAAAAAATGGATGCCA AGAAGGAAGTAACAGAGACCTCACAAG ]
[+] EMBL AU067909 [ ACCCACGAAGGCCGAAGACGACGAGGCAAGGCAACGTCGGTGTTGTGAGGGGGACACACACAAACACTCGACCTTCGAGAGATTTCCGAGCGGCA NAATGGNTCTNTGGGAGAGGGCGCGGGCCTTCGCCGGGGAGGCGGCGAA NGGTNCGCAGGAGCTGTCGGCGGAGGCGGCCAAGCGCTCGTCGGCGCTGGTGTCGGAGA GGCGAAGAAGTCCAAGGAGATCTTTTCGGAGACCGCNACCAANTCG GGGAGGATCGCGGCCGAGGCCACCAAGCAGGCCGACCTCCTCGCCGGCCAGATCAAGCGNCTNTCCA ]
[+] EMBL CF324174 [ GCCGACCTCCTCGCCGGCCAGATCAAGCGCCTCTCCACCGACCTCCCCGTCCCCTCCATCCCCGCGATCCCGCCCATCCCCACCGCCGTCGCGCCGGAGCCGGACGCCGCGGAGCTCGAGCGCTACGGCATCACCGAAGACCTCCGCGAGTTCGTCAAGGGCATGACTATCAGCACCTTCCGCGACTTCCCCTTGCAAGATGAGCCGGAGATGTCGGATGTGCCCACGGTATCGAACGTGCGTCAGGATCTGAATGAGTGGCAGGCCAGGCACGCCACTCTCGTCCTCTCCGCCGTCAAGGAAATTTCAAAGTTCAGATATGAGTTGTGTCCACGATACATGAAAGAGCGTAAATTCTGGAGGGTTTATTTCTTGCTAGTAAACAACTACACATCCCTCTATGAGAACAAAT ATTTTGAGGAGCTGAAAGTAAAAGCAGAGGAGGAAAAAATGGATGCCA AGAAGGAAGTAACAGAGACCTCACAAGCTACAACTGCAGAACATAAAGACATGAAGGTGCAAAGCAAGACTTCAACTTCAACAAATCCA GAGCATGATTTGGATGTTTTCCTTC ]
[+] EMBL CA766004 [ TCTTGCTAGTAAACAACTACACATCCCTCTATGAGAACAAAT ATTTTGAGGAGCTGAAAGTAAAATCAGAGGAGGAAAAAATGGATGCCA AGAAGGAAGTAACAGAGACCTCACAAGCTACAACTGCAGAACATAAAGACATGAAGGTGCAAAGCAAGACTTCAACTTCAACAAATCCA GAGCATGATTTGGATGTTTTCCTTCTGGGAGATCTAGGCAGTGATGA TGAGGGTCCTGATGGTGATGATGATGGGTTAGATGATGACTTCGATAAGATAGATGGCACTTCAGGCTTAGAGAGTGATGATGATGATGACAAGGAAAAAGCAGCAGGCAAGGCAGAAAGTGCA AAGGAGTAGCTTGCAGAGCTGGTGATCAATATGATATGAAGTGCTTTCCCAGATCTACACATGCTTATCATGACAACGAAGGCTCTAGCACGCAGCTTACTGCACTAGTCCAGCTGCTATTGTATAATAGATGGTTGCATCTATCCATTCATTTTTCTCC ]
[+] EMBL AA750567 [ ACACATCCCTCTATGAGAACAAAT ATTTTGAGGAGCTGAAAGTAAAATCAGAGGAGGAAAAAATGGATGCCA AGAAGGAAGTAACAGAGACCTCACAAGCTACAACTGCAGGACATAAAGACATGAAGGTGCAAAGCAAGACTTCAACTTCAACAAATCCA GTGCATGATTTGGATGTTTTCCTACTGGGAGATCTAGGCAGTGATTATTGAGGGTCCTAATtg ]
[+] EMBL BI795901 [ CTATGAGAACAAATGATTTTGAGGAGCTGTAAGTAAAATCAGAGGAGGAAAAAATGGATGCCACAGAAGGAAGTAACAGAGACCTCACAAGCTACAACTGCAGAACATAAAGACATGAAGGTGCAAAGCAAGACTTCAACTTCAACCAATCCACGAGCATGATTTGGATGTTTTCCTTCTGGGAGATCTAGGCAGTGATGA TGAGGGTCCTGATGGTGATGATGATGGGTTAGATGATGACTTCGATAAGATAGATGGCACTTCAGGCTTAGAGAGTGATGATGATGATGACAAGGAAAAAGCAGCAGGCAAGGCAGAAAGTGCACAAGGAGTAGCTTGCAGAGCTGGTGATC ATATGATATGAAGTGCTTTCCCAGATCTACACATGCTTATCATGAC ACGAAGGCTCTAGCACGCAGCTTACTGCACTAGTCCAGCTGCTATTGTATAATAGATGGTTGC ]
consensusID : consensus_11249#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence
[GGATTCGGCACGAGCTCNTGCNGCNNAACATANNGACATGANGGTGCAAAGCAAGACTTCAACTTCAACNAATCCAGANCATGATTTGGATGTTTTCCTTCTGGGAGATCTAGGCAGTGATGATGAGGGTCCTGATGGTGATGATGATGGGTTNGATGATGACTNCGATAAGATNNATGGCACTTCAGGCTTAGNGAGTGATGATGNTGATGACNNGGANNAAGCNGCNGGCNAGGCNCAAAGTGCNANGGAGTAGCTTGCACCAGCTGGTNATCNATNTGATNTTNTTTGNTTTCCCAGATCTNCACATGCTTATCATGACAACNAACGCTCTAGCNCGCTGCTTNCTGCACTAGTCCNGCTGCTNTTGTTTCATAGATGGTTGCATCTNTCCATNCNTTTTTCTCCCCCTGAAGCNATGCTGCTNTCGTCGTTGCATTTTTCTNGTCCNAGATTTANAANGCCTNTTGTNTTTCCGNNTTCTGGAGCCNCCTNNGGTGCTGTCGCCTNTNCC]
[+] EMBL AA753119 [GGATTCGGCACGAGCTCNTGCNGCNNAACATANNGACATGANGGTGCAAAGCAAGACTTCAACTTCAACNAATCCAGANCATGATTTGGATGTTTTCCTTCTGGGAGATCTAGGCAGTGATGATGAGGGTCCTGATGGTGATGATGATGGGTTNGATGATGACTNCGATAAGATNNATGGCACTTCAGGCTTAGNGAGTGATGATGNTGATGACNNGGANNAAGCNGCNGGCNAGGCNCAAAGTGCNANGGAGTAGCTTGCACCAGCTGGTNATCNATNTGATNTTNTTTGNTTTCCCAGATCTNCACATGCTTATCATGACAACNAACGCTCTAGCNCGCTGCTTNCTGCACTAGTCCNGCTGCTNTTGTTTCATAGATGGTTGCATCTNTCCATNCNTTTTTCTCCCCCTGAAGCNATGCTGCTNTCGTCGTTGCATTTTTCTNGTCCNAGATTTANAANGCCTNTTGTNTTTCCGNNTTCTGGAGCCNCCTNNGGTGCTGTCGCCTNTNCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11249#0 TCAGTCCTACCTTGTCTTCCATTTTTCACAAATCGCAAGCAAAGCCCCACACCAAAATCC 60
consensus_11249#1 ------------------------------------------------------------
consensus_11249#0 ACCCACGAAGGCCGAAGACGACGAGGCAAGGCAACGTCGGTGTTGTGAGGGGGACACACA 120
consensus_11249#1 ------------------------------------------------------------
consensus_11249#0 CAAACACTCGACCTTCGAGAGATTTCCGAGCGGCAGCAATGGATCTCTGGGAGAGGGCGC 180
consensus_11249#1 ------------------------------------------------------------
consensus_11249#0 GGGCCTTCGCCGGGGAGGCGGCGAAGCGGTCGCAGGAGCTGTCGGCGGAGGCGGCCAAGC 240
consensus_11249#1 ------------------------------------------------------------
consensus_11249#0 GCTCGTCGGCGCTGGTGTCGGAGACGGCGAAGAAGTCCAAGGAGATCTTCTCGGAGACCG 300
consensus_11249#1 ------------------------------------------------------------
consensus_11249#0 CGACCAAGTCGCGGGAGATCGCGGCCGAGGCCACCAAGCAGGCCGACCTCCTCGCCGGCC 360
consensus_11249#1 ------------------------------------------------------------
consensus_11249#0 AGATCAAGCGCCTCTCCACCGACCTCCCCGTCCCCTCCATCCCCGCGATCCCGCCCATCC 420
consensus_11249#1 ------------------------------------------------------------
consensus_11249#0 CCACCGCCGTCGCGCCGGAGCCGGACGCCGCGGAGCTCGAGCGCTACGGCATCACCGAAG 480
consensus_11249#1 ------------------------------------------------------------
consensus_11249#0 ACCTCCGCGAGTTCGTCAAGGGCATGACTATCAGCACCTTCCGCGACTTCCCCTTGCAAG 540
consensus_11249#1 ------------------------------------------------------------
consensus_11249#0 ATGAGCCGGAGATGTCGGATGTGCCCACGGTATCGAACGTGCGTCAGGATCTGAATGAGT 600
consensus_11249#1 ------------------------------------------------------------
consensus_11249#0 GGCAGGCCAGGCACGCCACTCTCGTCCTCTCCGCCGTCAAGGAAATTTCAAAGTTCAGAT 660
consensus_11249#1 ------------------------------------------------------------
consensus_11249#0 ATGAGTTGTGTCCACGATACATGAAAGAGCGTAAATTCTGGAGGGTTTATTTCTTGCTAG 720
consensus_11249#1 ------------------------------------------------------------
consensus_11249#0 TAAACAACTACACATCCCTCTATGAGAACAAATATTTTGAGGAGCTGAAAGTAAAAGCAG 780
consensus_11249#1 ------------------------------------------------------------
consensus_11249#0 AGGAGGAAAAAATGGATGCCAAGAAGGAAGTAACAGAGACCTCACAAGCTACAACTGCAG 840
consensus_11249#1 ----------------------------------GGATTCGGCACGAGCTCNTGCNGCNN 26
** * *** **** * **
consensus_11249#0 AACATAAAGACATGAAGGTGCAAAGCAAGACTTCAACTTCAACAAATCCAGAGCATGATT 900
consensus_11249#1 AACATANNGACATGANGGTGCAAAGCAAGACTTCAACTTCAACNAATCCAGANCATGATT 86
****** ******* *************************** ******** *******
consensus_11249#0 TGGATGTTTTCCTTCTGGGAGATCTAGGCAGTGATGATGAGGGTCCTGATGGTGATGATG 960
consensus_11249#1 TGGATGTTTTCCTTCTGGGAGATCTAGGCAGTGATGATGAGGGTCCTGATGGTGATGATG 146
************************************************************
consensus_11249#0 ATGGGTTAGATGATGACTTCGATAAGATAGATGGCACTTCAGGCTTAGAGAGTGATGATG 1020
consensus_11249#1 ATGGGTTNGATGATGACTNCGATAAGATNNATGGCACTTCAGGCTTAGNGAGTGATGATG 206
******* ********** ********* ****************** ***********
consensus_11249#0 ATGATGACAAGGAAAAAGCAGCAGGCAAGGCAGAAAGTGCAAAGGAGTAGCTTGCAG-AG 1079
consensus_11249#1 NTGATGACNNGGANNAAGCNGCNGGCNAGGCNCAAAGTGCNANGGAGTAGCTTGCACCAG 266
******* *** **** ** *** **** ******* * ************* **
consensus_11249#0 CTGGTGATCAATATGATATGAAGTGCTTTCCCAGATCTACACATGCTTATCATGACAACG 1139
consensus_11249#1 CTGGTNATCNATNTGATNTTNTTTGNTTTCCCAGATCTNCACATGCTTATCATGACAACN 326
***** *** ** **** * ** ************ ********************
consensus_11249#0 AAGGCTCTAGCACGCAGCTTACTGCACTAGTCCAGCTGCTATTGTATAATAGATGGTTGC 1199
consensus_11249#1 AACGCTCTAGCNCGCTGCTTNCTGCACTAGTCCNGCTGCTNTTGTTTCATAGATGGTTGC 386
** ******** *** **** ************ ****** **** * ************
consensus_11249#0 ATCTATCCATTCATTTTTCTCCCACTGAAGCAATGCTGCTTTCGTTGTTGCATTTTTCTT 1259
consensus_11249#1 ATCTNTCCATNCNTTTTTCTCCCCCTGAAGCNATGCTGCTNTCGTCGTTGCATTTTTCTN 446
**** ***** * ********** ******* ******** **** *************
consensus_11249#0 GTCCAAGATTTAGAAGGCTCTATTGTTTTTCCGTTTTCTGGAGCCATCTAGGGTGCT-TT 1318
consensus_11249#1 GTCCNAGATTTANAANGC-CTNTTGTNTTTCCGNNTTCTGGAGCCNCCTNNGGTGCTGTC 505
**** ******* ** ** ** **** ****** ********** ** ****** *
consensus_11249#0 GCATATGCC 1327
consensus_11249#1 GCCTNTNCC 514
** * * **
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||