These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11249#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1327 fasta sequence [TCAGTCCTACCTTGTCTTCCATTTTTCACAAATCGCAAGCAAAGCCCCACACCAAAATCCACCCACGAAGGCCGAAGACGACGAGGCAAGGCAACGTCGGTGTTGTGAGGGGGACACACACAAACACTCGACCTTCGAGAGATTTCCGAGCGGCAGCAATGGATCTCTGGGAGAGGGCGCGGGCCTTCGCCGGGGAGGCGGCGAAGCGGT-CGCAGGAGCTGTCGGCGGAGGCGGCCAAGCGCTCGTCGGCGCTGGTGTCGGAGACGGCGAAGAAGTCCAAGGAGATCTTCTCGGAGACCGCGACCAAGTCGCGGGA-GATCGCGGCCGAGGCCACCAAGCAGGCCGACCTCCTCGCCGGCCAGATCAAGCGCCTCTCCACCGACCTCCCCGTCCCCTCCATCCCCGCGATCCCGCCCATCCCCACCGCCGTCGCGCCGGAGCCGGACGCCGCGGAGCTCGAGCGCTACGGCATCACCGAAGACCTCCGCGAGTTCGTCAAGGGCATGACTATCAGCACCTTCCGCGACTTCCCCTTGCAAGATGAGCCGGAGATGTCGGATGTGCCCACGGTATCGAACGTGCGTCAGGATCTGAATGAGTGGCAGGCCAGGCACGCCACTCTCGTCCTCTCCGCCGTCAAGGAAATTTCAAAGTTCAGATATGAGTTGTGTCCACGATACATGAAAGAGCGTAAATTCTGGAGGGTTTATTTCTTGCTAGTAAACAACTACACATCCCTCTATGAGAACAAAT-ATTTTGAGGAGCTGAAAGTAAAAGCAGAGGAGGAAAAAATGGATGCCA-AGAAGGAAGTAACAGAGACCTCACAAGCTACAACTGCAGAACATAAAGACATGAAGGTGCAAAGCAAGACTTCAACTTCAACAAATCCA-GAGCATGATTTGGATGTTTTCCTTCTGGGAGATCTAGGCAGTGATGA-TGAGGGTCCTGATGGTGATGATGATGGGTTAGATGATGACTTCGATAAGATAGATGGCACTTCAGGCTTAGAGAGTGATGATGATGATGACAAGGAAAAAGCAGCAGGCAAGGCAGAAAGTGCA-AAGGAGTAGCTTGCAGAGCTGGTGATCAATATGATATGAAGTGCTTTCCCAGATCTACACATGCTTATCATGACAACGAAGGCTCTAGCACGCAGCTTACTGCACTAGTCCAGCTGCTATTGTATAATAGATGGTTGCATCTATCCATTCATTTTTCTCCCACTGAAGCAATGCTGCTTTCGTTGTTGCATTTTTCTTGTCCAAGATTTAGAAGGCTCTATTGTTTTTCCGTTTTCTGGAGCCATCTAGGGTGCTTTGCATATGCC] [+] EMBL AK101892 [TCAGTCCTACCTTGTCTTCCATTTTTCACAAATCGCAAGCAAAGCCCCACACCAAAATCCACCCACGAAGGCCGAAGACGACGAGGCAAGGCAACGTCGGTGTTGTGAGGGGGACACACACAAACACTCGACCTTCGAGAGATTTCCGAGCGGCAGCAATGGATCTCTGGGAGAGGGCGCGGGCCTTCGCCGGGGAGGCGGCGAAGCGGT CGCAGGAGCTGTCGGCGGAGGCGGCCAAGCGCTCGTCGGCGCTGGTGTCGGAGACGGCGAAGAAGTCCAAGGAGATCTTCTCGGAGACCGCGACCAAGTCGCGGGA GATCGCGGCCGAGGCCACCAAGCAGGCCGACCTCCTCGCCGGCCAGATCAAGCGCCTCTCCACCGACCTCCCCGTCCCCTCCATCCCCGCGATCCCGCCCATCCCCACCGCCGTCACGCCGGAGCCGGACGCCGCGGAGCTCGAGCGCTACGGCATCACCGAAGACCTCCGCGAGTTCGTCAAGGGCATGACTATCAGCACCTTCCGCGACTTCCCCTTGCAAGATGAGCCGGAGATGTCGGATGTGCCCACGGTATCGAACGTGCGTCAGGATCTGAATGAGTGGCAGGCCAGGCACGCCACTCTCGTCCTCTCCGCCGTCAAGGAAATTTCAAAGTTCAGATATGAGTTGTGTCCACGATACATGAAAGAGCGTAAATTCTGGAGGGTTTATTTCTTGCTAGTAAACAACTACACATCCCTCTATGAGAACAAAT ATTTTGAGGAGCTGAAAGTAAAAGCAGAGGAGGAAAAAATGGATGCCA AGAAGGAAGTAACAGAGACCTCACAAGCTACAACTGCAGAACATAAAGACATGAAGGTGCAAAGCAAGACTTCAACTTCAACAAATCCA GAGCATGATTTGGATGTTTTCCTTCTGGGAGATCTAGGCAGTGATGA TGAGGGTCCTGATGGTGATGATGATGGGTTAGATGATGACTTCGATAAGATAGATGGCACTTCAGGCTTAGAGAGTGATGATGATGATGACAAGGAAAAAGCAGCAGGCAAGGCAGAAAGTGCA AAGGAGTAGCTTGCAGAGCTGGTGATCAATATGATATGAAGTGCTTTCCCAGATCTACACATGCTTATCATGACAACGAAGGCTCTAGCACGCAGCTTACTGCACTAGTCCAGCTGCTATTGTATAATAGATGGTTGCATCTATCCATTCATTTTTCTCCCACTGAAGCAATGCTGCTTTCGTTGTTGCATTTTTCTTGTCCAAGATTTAGAAGGCTCTATTGTTTTTCCGTTTTCTGGAGCCATCTAGGGTGCTTTGCATATGCC] [+] EMBL AK107913 [ TCTTCCATTTTTCACAAATCGCAAGCAAAGCCCCACACCAAAATCCACCCACGAAGGCCGAAGACGACGAGGCAAGGCAACGTCGGTGTTGTGAGGGGGACACACACAAACACTCGACCTTCGAGAGATTTCCGAGCGGCAGCAATGGATCTCTGGGAGAGGGCGCGGGCCTTCGCCGGGGAGGCGGCGAAGCGGT CGCAGGAGCTGTCGGCGGAGGCGGCCAAGCGCTCGTCGGCGCTGGTGTCGGAGACGGCGAAGAAGTCCAAGGAGATCTTCTCGGAGACCGCGACCAAGTCGCGGGA GATCGCGGCCGAGGCCACCAAGCAGGCCGACCTCCTCGCCGGCCAGATCAAGCGCCTCTCCACCGACCTCCCCGTCCCCTCCATCCCCGCGATCCCGCCCATCCCCACCGCCGTCGCGCCGGAGCCGGACGCCGCGGAGCTCGAGCGCTACGGCATCACCGAAGACCTCCGCGAGTTCGTCAAGGGCATGACTATCAGCACCTTCCGCGACTTCCCCTTGCAAGATGAGCCGGAGATGTCGGATGTGCCCACGGTATCGAACGTGCGTCAGGATCTGAATGAGTGGCAGGCCAGGCACGCCACTCTCGTCCTCTCCGCCGTCAAGGAAATTTCAAAGTTCAGATATGAGTTGTGTCCACGATACATGAAAGAGCGTAAATTCTGGAGGGTTTATTTCTTGCTAGTAAACAACTACACATCCCTCTATGAGAACAAAT ATTTTGAGGAGCTGAAAGTAAAAGCAGAGGAGGAAAAAATGGATGCCA AGAAGGAAGTAACAGAGACCTCACAAG ] [+] EMBL AU067909 [ ACCCACGAAGGCCGAAGACGACGAGGCAAGGCAACGTCGGTGTTGTGAGGGGGACACACACAAACACTCGACCTTCGAGAGATTTCCGAGCGGCA NAATGGNTCTNTGGGAGAGGGCGCGGGCCTTCGCCGGGGAGGCGGCGAA NGGTNCGCAGGAGCTGTCGGCGGAGGCGGCCAAGCGCTCGTCGGCGCTGGTGTCGGAGA GGCGAAGAAGTCCAAGGAGATCTTTTCGGAGACCGCNACCAANTCG GGGAGGATCGCGGCCGAGGCCACCAAGCAGGCCGACCTCCTCGCCGGCCAGATCAAGCGNCTNTCCA ] [+] EMBL CF324174 [ GCCGACCTCCTCGCCGGCCAGATCAAGCGCCTCTCCACCGACCTCCCCGTCCCCTCCATCCCCGCGATCCCGCCCATCCCCACCGCCGTCGCGCCGGAGCCGGACGCCGCGGAGCTCGAGCGCTACGGCATCACCGAAGACCTCCGCGAGTTCGTCAAGGGCATGACTATCAGCACCTTCCGCGACTTCCCCTTGCAAGATGAGCCGGAGATGTCGGATGTGCCCACGGTATCGAACGTGCGTCAGGATCTGAATGAGTGGCAGGCCAGGCACGCCACTCTCGTCCTCTCCGCCGTCAAGGAAATTTCAAAGTTCAGATATGAGTTGTGTCCACGATACATGAAAGAGCGTAAATTCTGGAGGGTTTATTTCTTGCTAGTAAACAACTACACATCCCTCTATGAGAACAAAT ATTTTGAGGAGCTGAAAGTAAAAGCAGAGGAGGAAAAAATGGATGCCA AGAAGGAAGTAACAGAGACCTCACAAGCTACAACTGCAGAACATAAAGACATGAAGGTGCAAAGCAAGACTTCAACTTCAACAAATCCA GAGCATGATTTGGATGTTTTCCTTC ] [+] EMBL CA766004 [ TCTTGCTAGTAAACAACTACACATCCCTCTATGAGAACAAAT ATTTTGAGGAGCTGAAAGTAAAATCAGAGGAGGAAAAAATGGATGCCA AGAAGGAAGTAACAGAGACCTCACAAGCTACAACTGCAGAACATAAAGACATGAAGGTGCAAAGCAAGACTTCAACTTCAACAAATCCA GAGCATGATTTGGATGTTTTCCTTCTGGGAGATCTAGGCAGTGATGA TGAGGGTCCTGATGGTGATGATGATGGGTTAGATGATGACTTCGATAAGATAGATGGCACTTCAGGCTTAGAGAGTGATGATGATGATGACAAGGAAAAAGCAGCAGGCAAGGCAGAAAGTGCA AAGGAGTAGCTTGCAGAGCTGGTGATCAATATGATATGAAGTGCTTTCCCAGATCTACACATGCTTATCATGACAACGAAGGCTCTAGCACGCAGCTTACTGCACTAGTCCAGCTGCTATTGTATAATAGATGGTTGCATCTATCCATTCATTTTTCTCC ] [+] EMBL AA750567 [ ACACATCCCTCTATGAGAACAAAT ATTTTGAGGAGCTGAAAGTAAAATCAGAGGAGGAAAAAATGGATGCCA AGAAGGAAGTAACAGAGACCTCACAAGCTACAACTGCAGGACATAAAGACATGAAGGTGCAAAGCAAGACTTCAACTTCAACAAATCCA GTGCATGATTTGGATGTTTTCCTACTGGGAGATCTAGGCAGTGATTATTGAGGGTCCTAATtg ] [+] EMBL BI795901 [ CTATGAGAACAAATGATTTTGAGGAGCTGTAAGTAAAATCAGAGGAGGAAAAAATGGATGCCACAGAAGGAAGTAACAGAGACCTCACAAGCTACAACTGCAGAACATAAAGACATGAAGGTGCAAAGCAAGACTTCAACTTCAACCAATCCACGAGCATGATTTGGATGTTTTCCTTCTGGGAGATCTAGGCAGTGATGA TGAGGGTCCTGATGGTGATGATGATGGGTTAGATGATGACTTCGATAAGATAGATGGCACTTCAGGCTTAGAGAGTGATGATGATGATGACAAGGAAAAAGCAGCAGGCAAGGCAGAAAGTGCACAAGGAGTAGCTTGCAGAGCTGGTGATC ATATGATATGAAGTGCTTTCCCAGATCTACACATGCTTATCATGAC ACGAAGGCTCTAGCACGCAGCTTACTGCACTAGTCCAGCTGCTATTGTATAATAGATGGTTGC ] consensusID : consensus_11249#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence [GGATTCGGCACGAGCTCNTGCNGCNNAACATANNGACATGANGGTGCAAAGCAAGACTTCAACTTCAACNAATCCAGANCATGATTTGGATGTTTTCCTTCTGGGAGATCTAGGCAGTGATGATGAGGGTCCTGATGGTGATGATGATGGGTTNGATGATGACTNCGATAAGATNNATGGCACTTCAGGCTTAGNGAGTGATGATGNTGATGACNNGGANNAAGCNGCNGGCNAGGCNCAAAGTGCNANGGAGTAGCTTGCACCAGCTGGTNATCNATNTGATNTTNTTTGNTTTCCCAGATCTNCACATGCTTATCATGACAACNAACGCTCTAGCNCGCTGCTTNCTGCACTAGTCCNGCTGCTNTTGTTTCATAGATGGTTGCATCTNTCCATNCNTTTTTCTCCCCCTGAAGCNATGCTGCTNTCGTCGTTGCATTTTTCTNGTCCNAGATTTANAANGCCTNTTGTNTTTCCGNNTTCTGGAGCCNCCTNNGGTGCTGTCGCCTNTNCC] [+] EMBL AA753119 [GGATTCGGCACGAGCTCNTGCNGCNNAACATANNGACATGANGGTGCAAAGCAAGACTTCAACTTCAACNAATCCAGANCATGATTTGGATGTTTTCCTTCTGGGAGATCTAGGCAGTGATGATGAGGGTCCTGATGGTGATGATGATGGGTTNGATGATGACTNCGATAAGATNNATGGCACTTCAGGCTTAGNGAGTGATGATGNTGATGACNNGGANNAAGCNGCNGGCNAGGCNCAAAGTGCNANGGAGTAGCTTGCACCAGCTGGTNATCNATNTGATNTTNTTTGNTTTCCCAGATCTNCACATGCTTATCATGACAACNAACGCTCTAGCNCGCTGCTTNCTGCACTAGTCCNGCTGCTNTTGTTTCATAGATGGTTGCATCTNTCCATNCNTTTTTCTCCCCCTGAAGCNATGCTGCTNTCGTCGTTGCATTTTTCTNGTCCNAGATTTANAANGCCTNTTGTNTTTCCGNNTTCTGGAGCCNCCTNNGGTGCTGTCGCCTNTNCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11249#0 TCAGTCCTACCTTGTCTTCCATTTTTCACAAATCGCAAGCAAAGCCCCACACCAAAATCC 60 consensus_11249#1 ------------------------------------------------------------ consensus_11249#0 ACCCACGAAGGCCGAAGACGACGAGGCAAGGCAACGTCGGTGTTGTGAGGGGGACACACA 120 consensus_11249#1 ------------------------------------------------------------ consensus_11249#0 CAAACACTCGACCTTCGAGAGATTTCCGAGCGGCAGCAATGGATCTCTGGGAGAGGGCGC 180 consensus_11249#1 ------------------------------------------------------------ consensus_11249#0 GGGCCTTCGCCGGGGAGGCGGCGAAGCGGTCGCAGGAGCTGTCGGCGGAGGCGGCCAAGC 240 consensus_11249#1 ------------------------------------------------------------ consensus_11249#0 GCTCGTCGGCGCTGGTGTCGGAGACGGCGAAGAAGTCCAAGGAGATCTTCTCGGAGACCG 300 consensus_11249#1 ------------------------------------------------------------ consensus_11249#0 CGACCAAGTCGCGGGAGATCGCGGCCGAGGCCACCAAGCAGGCCGACCTCCTCGCCGGCC 360 consensus_11249#1 ------------------------------------------------------------ consensus_11249#0 AGATCAAGCGCCTCTCCACCGACCTCCCCGTCCCCTCCATCCCCGCGATCCCGCCCATCC 420 consensus_11249#1 ------------------------------------------------------------ consensus_11249#0 CCACCGCCGTCGCGCCGGAGCCGGACGCCGCGGAGCTCGAGCGCTACGGCATCACCGAAG 480 consensus_11249#1 ------------------------------------------------------------ consensus_11249#0 ACCTCCGCGAGTTCGTCAAGGGCATGACTATCAGCACCTTCCGCGACTTCCCCTTGCAAG 540 consensus_11249#1 ------------------------------------------------------------ consensus_11249#0 ATGAGCCGGAGATGTCGGATGTGCCCACGGTATCGAACGTGCGTCAGGATCTGAATGAGT 600 consensus_11249#1 ------------------------------------------------------------ consensus_11249#0 GGCAGGCCAGGCACGCCACTCTCGTCCTCTCCGCCGTCAAGGAAATTTCAAAGTTCAGAT 660 consensus_11249#1 ------------------------------------------------------------ consensus_11249#0 ATGAGTTGTGTCCACGATACATGAAAGAGCGTAAATTCTGGAGGGTTTATTTCTTGCTAG 720 consensus_11249#1 ------------------------------------------------------------ consensus_11249#0 TAAACAACTACACATCCCTCTATGAGAACAAATATTTTGAGGAGCTGAAAGTAAAAGCAG 780 consensus_11249#1 ------------------------------------------------------------ consensus_11249#0 AGGAGGAAAAAATGGATGCCAAGAAGGAAGTAACAGAGACCTCACAAGCTACAACTGCAG 840 consensus_11249#1 ----------------------------------GGATTCGGCACGAGCTCNTGCNGCNN 26 ** * *** **** * ** consensus_11249#0 AACATAAAGACATGAAGGTGCAAAGCAAGACTTCAACTTCAACAAATCCAGAGCATGATT 900 consensus_11249#1 AACATANNGACATGANGGTGCAAAGCAAGACTTCAACTTCAACNAATCCAGANCATGATT 86 ****** ******* *************************** ******** ******* consensus_11249#0 TGGATGTTTTCCTTCTGGGAGATCTAGGCAGTGATGATGAGGGTCCTGATGGTGATGATG 960 consensus_11249#1 TGGATGTTTTCCTTCTGGGAGATCTAGGCAGTGATGATGAGGGTCCTGATGGTGATGATG 146 ************************************************************ consensus_11249#0 ATGGGTTAGATGATGACTTCGATAAGATAGATGGCACTTCAGGCTTAGAGAGTGATGATG 1020 consensus_11249#1 ATGGGTTNGATGATGACTNCGATAAGATNNATGGCACTTCAGGCTTAGNGAGTGATGATG 206 ******* ********** ********* ****************** *********** consensus_11249#0 ATGATGACAAGGAAAAAGCAGCAGGCAAGGCAGAAAGTGCAAAGGAGTAGCTTGCAG-AG 1079 consensus_11249#1 NTGATGACNNGGANNAAGCNGCNGGCNAGGCNCAAAGTGCNANGGAGTAGCTTGCACCAG 266 ******* *** **** ** *** **** ******* * ************* ** consensus_11249#0 CTGGTGATCAATATGATATGAAGTGCTTTCCCAGATCTACACATGCTTATCATGACAACG 1139 consensus_11249#1 CTGGTNATCNATNTGATNTTNTTTGNTTTCCCAGATCTNCACATGCTTATCATGACAACN 326 ***** *** ** **** * ** ************ ******************** consensus_11249#0 AAGGCTCTAGCACGCAGCTTACTGCACTAGTCCAGCTGCTATTGTATAATAGATGGTTGC 1199 consensus_11249#1 AACGCTCTAGCNCGCTGCTTNCTGCACTAGTCCNGCTGCTNTTGTTTCATAGATGGTTGC 386 ** ******** *** **** ************ ****** **** * ************ consensus_11249#0 ATCTATCCATTCATTTTTCTCCCACTGAAGCAATGCTGCTTTCGTTGTTGCATTTTTCTT 1259 consensus_11249#1 ATCTNTCCATNCNTTTTTCTCCCCCTGAAGCNATGCTGCTNTCGTCGTTGCATTTTTCTN 446 **** ***** * ********** ******* ******** **** ************* consensus_11249#0 GTCCAAGATTTAGAAGGCTCTATTGTTTTTCCGTTTTCTGGAGCCATCTAGGGTGCT-TT 1318 consensus_11249#1 GTCCNAGATTTANAANGC-CTNTTGTNTTTCCGNNTTCTGGAGCCNCCTNNGGTGCTGTC 505 **** ******* ** ** ** **** ****** ********** ** ****** * consensus_11249#0 GCATATGCC 1327 consensus_11249#1 GCCTNTNCC 514 ** * * ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||