These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11250#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 2495 fasta sequence [CAAGCGAAGTCCTCTCTCTTCACACTTCACACACGCTCTCGGTCTCGGTCTCTCGCTTTTTACCACACTACTCTGCTGCGACCGCGAAGGGAGGGGTGTGTGTGGGTTGGATCAACTACCCCAGCTACTGCCGTGCCGAGGGAAGCGGGAGCGCCGCCCTAGCGACCGCAACTGCAGGCGCGCATTTCACGGGATTCCGTGGGCTGTGCTGTGCTGTACAGACCGGCGACGAGCCGCCGCCGCCGTGGAGGATCGGCTACTTATCTGACATAAACAAACGAAGATGCTGCTCGTCTAGTTCCCTGATTTGGAGATTCATCAAATGGATCATCTCAGTATTAGAAATCCTTTGTCTCTTCTGCTCTCACTGCAGTTGTCACTTTTGTTGTTCAATCCCTTGTCTGTAGCAGACTTAACCTCTGAAAAGCAAGCCCTTCTAGACTTTGCCTCTGCAGTGTATCGTGGCAACAGGCTCAACTGGAGTCAAAGCACATCATTGTGTTCTTGGCATGGCGTAAAATGCTCAGGAGATCAGTCACACATATTTGAATTAAGGGTACCAGGTGCTGGTCTCATTGGAGCAATTCCTCCAAACACTCTTGGAAAGCTTGACTCTCTCCAAGTTCTGAGCTTACGGTCTAATCGTTTAGCTGGAAGCCTTCCATCTGATGTGACTACGCTTCCTTCCTTACGATCCATATACCTTCAGCACAATAACTTTTCAGGAGATTTGCCTTCCTTTTTGAATCCTAACCTCAGTGTAGTGGACCTCTCCTACAATTCCTTTACCGGTGAAATTCCTATAAGCTTACAAAACCTTTCTCAGTTATCAGTCCTGAATTTACAAGAAAATTCTCTCTCTGGATCCATCCCTGATCTCAAGCTTCCAAGTCTGAGACTATTGAATCTGAGCAACAATGATTTGAAAGGCCAAATTCCTCAGTCGCTTCAAACATTTCCAAATGGCTCATTCTTGGGGAATCCTGGATTATGTGGGCCACCTCTAGCTAAATGCTTGCTTCCTGATTCACCGACGCCTTCACCAGCATCCCCTTCATCAGCACCAACTCCAATGTCAGCGCATCATGAGAAAAAGTTTGGCGCCGGATTCATAATTGCAGTTGCTGTTGGGGGCTTCGCAGTACTGATGTTTGTTGTGGTTGTGTTGGTTGTGTGTAATTCAAAGAGGAAAGGCAAGAAAGAGAGTGGTGTGGACTACAAGGGTAAGGGCACTGGTGTCAGAAGTGAGAAGCCAAAACAGGAGTTCAGTAGTGGCGTTCAGATCGCCGAGAAAAACAAGTTGGTTTTCTTGGAGGGTTGCTCCTATACCTTCGATTTGGAGGATCTACTGAGAGCTTCTGCAGAAGTCCTTGGCAAGGGAAGTTATGGAACTGCTTACAAAGCTATACTTGAGGATGGTACCGTTGTTGTTGTCAAGAGACTAAAAGATGTCGTGGCAGGAAAAAAAGAGTTTGAGCAACAGATGGAACTAATTGGTAGGTTAGGTAAACATGCAAACTTAGTCCCACTTCGTGCTTACTACTATTCTAAGGACGAGAAGCTCATCGTCTACGATTATCTCACCAATGGCAGTTTCTCAACCAAGTTACATGGTATCAGGGGTGTTACTGAAAAGACACCATTAGACTGGAGCACCAGAGTGAAGATAATCCTTGGAACAGCATACGGCATTGCACACGTTCATGCAGAAGGTGGCGCCAAGCTCACCCATGGCAATATTAAGTCTACAAATATCCTCCTCGATCAAGATTACAGTTCTTATGTTTCAGACTATGGTCTAACTGCCCTGATGAGTGTTCCAGCCAATGCATCTCGCGTTGTGGTCGGTTATCGCGCTCCTGAGACCATCGAGAACCGCAAGATCACCCAGAAATCCGACGTCTACAGCTTCGGCGTCCTCCTCATGGAGATGCTTACCGGTAAAGCTCCACTCCAGTCGCAGGGCAATGACGATGTCGTCGACCTACCAAGATGGGTGCACTCGGTGGTCAGAGAGGAGTGGACAGCCGAGGTGTTCGACGTCGAGCTGATCAAGCAGCAAAACATCGAGGAGGAGCTTGTTCAGATGCTCCAGATAGCAATGGCTTGCACATCAAGGTCTC--CAGATCGACGCCCATCGATGGAGGATGTGATCAGGATGATCGAGGGACTGCGCCATTCTGCTTCAGAGAGCCGAGCTTCCTCTGATGAAAAGATGAAGGACTCCAATCCACCATCGGTTTAGTTATGTGCTCCTGTGTTCATATGCCTCACCAAGCTGCGAGTTGCAGATCATTTGATTCTTAGCTAATTTGTGATTGAGTTCATGCTAAACATGGTCGACATTAGATGCAGCCTCAGAAAGCTGAGCATATTCTGATTGGAACTTATGAGTCTTGAATTCTTGATTCTTGACAAGTGTAGGATTTTTTTCTCTGGGAATTTTGATTGTTGGAATTGTGCATTTTGTGGTGTGATTTCATTATTTCGGCCGA] [+] EMBL AK103598 [CAAGCGAAGTCCTCTCTCTTCACACTTCACACACGCTCTCGGTCTCGGTCTCTCGCTTTTTACCACACTACTCTGCTGCGACCGCGAAGGGAGGGGTGTGTGTGGGTTGGATCAACTACCCCAGCTACTGCCGTGCCGAGGGAAGCGGGAGCGCCGCCCTAGCGACCGCAACTGCAGGCGCGCATTTCACGGGATTCCGTGGGCTGTGCTGTGCTGTACAGACCGGCGACGAGCCGCCGCCGCCGTGGAGGATCGGCTACTTATCTGACATAAACAAACGAAGATGCTGCTCGTCTAGTTCCCTGATTTGGAGATTCATCAAATGGGTCATCTCAGTATTAGAAATCCTTTGTCTCTTCTGCTCTCACTGCAGTTGTCACTTTTGTTGTTCAATCCCTTGTCTGTAGCAGACTTAACCTCTGAAAAGCAAGCCCTTCTAGACTTTGCCTCTGCAGTGTATCGTGGCAACAGGCTCAACTGGAGTCAAAGCACATCATTGTGTTCTTGGCATGGCGTAAAATGCTCAGGAGATCAGTCACACATATTTGAATTAAGGGTACCAGGTGCTGGTCTCATTGGAGCAATTCCTCCAAACACTCTTGGAAAGCTTGACTCTCTCCAAGTTCTGAGCTTACGGTCTAATCGTTTAGCTGGAAGCCTTCCATCTGATGTGACTACGCTTCCTTCCTTACGATCCATATACCTTCAGCACAATAACTTTTCAGGAGATTTGCCTTCCTTTTTGAATCCTAACCTCAGTGTAGTGGACCTCTCCTACAATTCCTTTACCGGTGAAATTCCTATAAGCTTACAAAACCTTTCTCAGTTATCAGTCCTGAATTTACAAGAAAATTCTCTCTCTGGATCCATCCCTGATCTCAAGCTTCCAAGTCTGAGACTATTGAATCTGAGCAACAATGATTTGAAAGGCCAAATTCCTCAGTCGCTTCAAACATTTCCAAATGGCTCATTCTTGGGGAATCCTGGATTATGTGGGCCACCTCTAGCTAAATGCTTGCTTCCTGATTCACCGACGCCTTCACCAGCATCCCCTTCATCAGCACCAACTCCAATGTCAGCACATCATGAGAAAAAGTTTGGCGCCGGATTCATAATTGCAGTTGCTGTTGGGGGCTTCGCAGTACTGATGTTTGTTGTGGTTGTGTTGGTTGTGTGTAATTCAAAGAGGAAAGGCAAGAAAGAGAGTGGTGTGGACTACAAGGGTAAGGGCACTGGTGTCAGAAGTGAGAAGCCAAAACAGGAGTTCAGTAGTGGCGTTCAGATCGCCGAGAAAAACAAGTTGGTTTTCTTGGAGGGTTGCTCCTATACCTTCGATTTGGAGGATCTACTGAGAGCTTCTGCAGAAGTCCTTGGCAAGGGAAGTTATGGAACTGCTTACAAAGCTATACTTGAGGATGGTACCGTTGTTGTTGTCAAGAGACTAAAAGATGTCGTGGCAGGAAAAAAAGAGTTTGAGCAACAGATGGAACTAATTGGTAGGTTAGGTAAACATGCAAACTTAGTCCCACTTCGTGCTTACTACTATTCTAAGGACGAGAAGCTCATCGTCTACGATTATCTCACCAATGGCAGTTTCTCAACCAAGTTACATGGTATCAGGGGTGTTACTGAAAAGACACCATTAGACTGGAGCACCAGAGTGAAGATAATCCTTGGAACAGCATACGGCATTGCACACGTTCATGCAGAAGGTGGCGCCAAGCTCACCCATGGCAATATTAAGTCTGCAAATATCCTCCTCGATCAAGATTACAGTTCTTATGTTTCAGACTATGGTCTAACTGCCCTGATGAGTGTTCCAGCCAATGCATCTCGCGTTGTGGTCGGTTATCGCGCTCCTGAGACCATCGAGAACCGCAAGATCACCCAGAAATCCGACGTCTACAGCTTCGGCGTCCTCCTCATGGAGATGCTTACCGGTAAAGCTCCACTCCAGTCGCAGGGCAATGACGATGTCGTCGACCTACCAAGATGGGTGCACTCGGTGGTCAGAGAGGAGTGGACAGCCGAGGTGTTCGACGTCGAGCTGATCAAGCAGCAAAACATCGAGGAGGAGCTTGTTCAGATGCTCCAGATAGCAATGGCTTGCACATCAAGGTCTC CAGATCGACGCCCATCGATGGAGGATGTGATCAGGATGATCGAGGGACTGCGCCATTCTGCTTCAGAGAGCCGAGCTTCCTCTGATGAAAAGATGAAGGACTCCAATCCACCATCGGTTTAGTTATGTGCTCCTGTGTTCATATGCCTCACCAAGCTGCGAGTTGCAGATCATTTGATTCTTAGCTAATTTGTGATTGAGTTCATGCTAAACATGGTCGACATTAGATGCAGCCTCAGAAAGCTGAGCATATTCTGATTGGAACTTATGAGTCTTGAATTCTTGATTCTTGACAAGTGTAGGATTTTTTTCTCTGGGAATTTTGATTGTT ] [+] EMBL AK099672 [ TGTGGGTTGGATCAACTACCCCAGCTACTGCCGTGCCGAGGGAAGCGGGAGCGCCGCCCTAGCGACCGCAACTGCAGGCGCGCATTTCACGGGATTCCGTGGGCTGTGCTGTGCTGTACAGACCGGCGACGAGCCGCCGCCGCCGTGGAGGATCGGCTACTTATCTGACATAAACAAACGAAGATGCTGCTCGTCTAGTTCCCTGATTTGGAGATTCATCAAATGGATCATCTCAGTATTAGAAATCCTTTGTCTCTTCTGCTCTCACTGCAGTTGTCACTTTTGTTGTTCAATCCCTTGTCTGTAGCAGACTTAACCTCTGAAAAGCAAGCCCTTCTAGACTTTGCCTCTGCAGTGTATCGTGGCAACAGGCTCAACTGGAGTCAAAGCACATCATTGTGTTCTTGGCATGGCGTAAAATGCTCAGGAGATCAGTCACACATATTTGAATTAAGGGTACCAGGTGCTGGTCTCATTGGAGCAATTCCTCCAAACACTCTTGGAAAGCTTGACTCTCTCCAAGTTCTGAGCTTACGGTCTAATCGTTTAGCTGGAAGCCTTCCATCTGATGTGACTACGCTTCCTTCCTTACGATCCATATACCTTCAGCACAATAACTTTTCAGGAGATTTGCCTTCCTTTTTGAATCCTAACCTAAGTGTAGTGGACCTCTCCTACAATTCCTTTACCGGTGAAATTCCTATAAGCTTACAAAACCTTTCTCAGTTATCAGTCCTGAATTTACAAGAAAATTCTCTCTCTGGATCCATCCCTGATCTCAAGCTTCCAAGTCTGAGACTATTGAATCTGAGCAACAATGATTTGAAAGGCCAAATTCCTCAGTCGCTTCAAACATTTCCAAATGGCTCATTCTTGGGGAATCCTGGATTATGTGGGCCACCTCTAGCTAAATGCTTGCTTCCTGATTCACCGACGCCTTCACCAGCATCCCCTTCATCAGCACCAACTCCAATGTCAGCGCATCATGAGAAAAAGTTTGGCGCCGGATTCATAATTGCAGTTGCTGTTGGGGGCTTCGCAGTACTGATGTTTGTTGTGGTTGTGTTGGTTGTGTGTAATTCAAAGAGGAAAGGCAAGAAAGAGAGTGGTGTGGACTACAAGGGTAAGGGCACTGGTGTCAGAAGTGAGAAGCCAAAACAGGAGTTCAGTAGTGGCGTTCAGATCGCCGAGAAAAACAAGTTGGTTTTCTTGGAGGGTTGCTCCTATACCTTCGATTTGGAGGATCTACTGAGAGCTTCTGCAGAAGTCCTTGGCAAGGGAAGTTATGGAACTGCTTACAAAGCTATACTTGAGGATGGTACCGTTGTTGTTGTCAAGAGACTAAAAGATGTCGTGGCAGGAAAAAAAGAGTTTGAGCAACAGATGGAACTAATTGGTAGGTTAGGTAAACATGCAAACTTAGTCCCACTTCGTGCTTACTACTATTCTAAGGACGAGAAGCTCATCGTCTGCGATTATCTCACCAATGGCAGTTTCTCAACCAAGTTACATGGTATCAGGGGTGTTACTGAAAAGACACCATTAGACTGGAGCACCAGAGTGAAGATAATCCTTGGAACAGCATACGGCATTGCACACGTTCATGCAGAAGGTGGCGCCAAGCTCACCCATGGCAATATTAAGTCTACAAATATCCTCCTCGATCAAGATTACAGTTCTTATGTTTCAGACTATGGTCTAACTGCCCTGATGAGTGTTCCAGCCAATGCATCTCGCGTTGTGGTCGGTTATCGCGCTCCTGAGACCATCGAGAACCGCAAGATCACCCAGAAATCCGACGTCTACAGCTTCGGCGTCCTCCTCATGGAGATGCTTACCGGTAAAGCTCCACTCCAGTCGCAGGGCAATGACGATGTCGTCGACCTACCAAGATGGGTGCACTCGGTGGTCAGAGAGGAGTGGACAGCCGAGGTGTTCGACGTCGAGCTGATCAAGCAGCAAAACATCGAGGAGGAGCTTGTTCAGATGCTCCAGATAGCAATGGCTTGCACATCAAGGTCTCCACAGATCGACGCCCATCGATGGAGGATGTGATCAGGATGATCGAGGGACTGCGCCATTCTGCTTCAGAGAGCCGAGCTTCCTCTGATGAAAAGATGAAGGACTCCAATCCACCATCGGTTTAGTTATGTGCTCCTGTGTTCATATGCCTCACCAAGCTGCGAGTTGCAGATCATTTGATTCTTAGCTAATTTGTGATTGAGTTCATGCTAAACATGGTCGACATTAGATGCAGCCTCAGAAAGCTGAGCATATTCTGATTGGAACTTATGAGTCTTGAATTCTTGATTCTTGACAAGTGTAGGATTTTTTTCTCTGGGAATTTTGATTGTTGGAATTGTGCATTTTGTGGTGTGATTTCATTATTTCGGCCGA] [+] EMBL AK073851 [ CGCCCTAGCGACCGCAACTGCAGGCGCGCATTTCACGGGATTCCGTGGGCTGTGCTGTGCTGTACAGACCGGCGACGAGCCGCCGCCGCCGTGGAGGATCGGCTACTTATCTGACATAAACAAACGAAGATGCTGCTCGTCTAGTTCCCTGATTTGGAGATTCATCAAATGGATCATCTCAGTATTAGAAATCCTTTGTCTCTTCTGCTCTCACTGCAGTTGTCACTTTTGTTGTTCAATCCCTTGTCTGTAGCAGACTTAACCTCTGAAAAGCAAGCCCTTCTAGACTTTGCCTCTGCAGTGTATCGTGGCAACAGGCTCAACTGGAGTCAAAGCACATCATTGTGTTCTTGGCATGGCGTAAAATGCTCAGGAGATCAGTCACACATATTTGAATTAAGGGTACCAGGTGCTGGTCTCATTGGAGCAATTCCTCCAAACACTCTTGGAAAGCTTGACTCTCTCCAAGTTCTGAGCTTACGGTCTAATCGTTTAGCTGGAAGCCTTCCATCTGATGTGACTACGCTTCCTTCCTTACGATCCATATACCTTCAGCACAATAACTTTTCAGGAGATTTGCCTTCCTTTTTGAATCCTAACCTCAGTGTAGTGGACCTCTCCTACAATTCCTTTACCGGTGAAATTCCTATAAGCTTACAAAACCTTTCTCAGTTATCAGTCCTGAATTTACAAGAAAATTCTCTCTCTGGATCCATCCCTGATCTCAAGCTTCCAAGTCTGAGACTATTGAATCTGAGCAACAATGATTTGAAAGGCCAAATTCCTCAGTCGCTTCAAACATTTCCAAATGGCTCATTCTTGGGGAATCCTGGATTATGTGGGCCACCTCTAGCTAAATGCTTGCTTCCTGATTCACCGACGCCTTCACCAGCATCCCCTTCATCAGCACCAACTCCAATGTCAGCGCATCATGAGAAAAAGTTTGGCGCCGGATTCATAATTGCAGTTGCTGTTGGGGGCTTCGCAGTACTGATGTTTGTTGTGGTTGTGTTGGTTGTGTGTAATTCAAAGAGGAAAGGCAAGAAAGAGAGTGGTGTGGACTACAAGGGTAAGGGCACTGGTGTCAGAAGTGAGAAGCCAAAACAGGAGTTCAGTAGTGGCGTTCAGATCGCCGAGAAAAACAAGTTGGTTTTCTTGGAGGGTTGCTCCTATACCTTCGATTTGGAGGATCTACTGAGAGCTTCTGCAGAAGTCCTTGGCAAGGGAAGTTATGGAACTGCTTACAAAGCTATACTTGAGGATGGTACCGTTGTTGTTGTCAAGAGACTAAAAGATGTCGTGGCAGGAAAAAAAGAGTTTGAGCAACAGATGGAACTAATTGGTAGGTTAGGTAAACATGCAAACTTAGT CCACTTCGTGCTTACTACTATTCTAAGGACGAGAAGCTCATCGTCTACGATTATCTCACCAATGGCAGTTTCTCAACCAAGTTACATGGTATCAGGGGTGTTACTGAAAAGACACCATTAGACTGGAGCACCAGAGTGAAGATAATCCTTGGAACAGCATACGGCATTGCACACGTTCATGCAGAAGGTGGCGCCAAGCTCACCCATGGCAATATTAAGTCTACAAATATCCTCCTCGATCAAGATTACAGTTCTTATGTTTCAGACTATGGTCTAACTGCCCTGATGAGTGTTCCAGCCAATGCATCTCGCGTTGTGGTCGGTTATCGCGCTCCTGAGACCATCGAGAACCGCAAGATCACCCAGAAATCCGACGTCTACAGCTTCGGCGTCCTCCTCATGGAGATGCTTACCGGTAAAGCTCCACTCCAGTCGCAGGGCAATGACGATGTTGTCGACCTACCAAGATGGGTGCACTCGGTGGTCAGAGAGGAGTGGACAGCCGAGGTGTTCGACGTCGAGCTGATCAAGCAGCAAAACATCGAGGAGGAGCTTGTTCAGATGCTCCAGATAGCAATGGCTTGCACATCAAGGTCTC CAGATCGACGCCCATCGATGGAGGATGTGATCAGGATGATCGAGGGACTGCGCCATTCTGCTTCAGAGAGCCGAGCTTCCTCTGATGAAAAGATGAAGGACTCCAATCCACCATCGGTTTAGTTATGTGCTCCTGTGTTCATATGCCTCACCAAGCTGCGAGTTGCAGATCATTTGATTCTTAGCTAATTTGTGATTGAGTTCATGCTAAACATGGTCGACATTAGATGCAGCCTCAGAAAGCTGAGCATATTCTGATTGGAACTTATGAGTCTTGAATTCTTGATTCTTGACAAGTGTAGGATTTT ] [+] EMBL C28851 [ AAACGAAGATGCTGCTCGTCTAGTTCCCTGATTTGGAGATTCATCAAATGGNTCATCTCAGTATTAGAAATCCTTTGTCTCTTCTGCTCTCACTGCAGTTGTCACTTTTGTTGTTCAATCCCTTGTCTGTAGCAGACTTAACCTCTGAAAAGCAAGCCCTTCTAGACTTTGCCTCTGCAGTGTATCGTGGCAACAGGCTCAACTGGAGTCAAAGCACATCATTGTGTTCTTGGCATGGCGTAAAATGCTCAGGNGATCAGTCACACATATTTGANTTAAGGGTACCAGGTGCTGGTCTCATTGGGGCAATTNCTCCAAACACTCTTGGAAAGCTTGACTCTNTCCA ] [+] EMBL CF324161 [ AATCGTTTAGCTGGAAGCCTTCCATCTGATGTGACTACGCTTCCTTCCTTACGATCCATATACCTTCAGCACAATAACTTTTCAGGAGATTTGCCTTCCTTTTTGAATCCTAACCTCAGTGTAGTGGACCTCTCCTACAATTCCTTTACCGGTGAAATTCCTATAAGCTTACAAAACCTTTCTCAGTTATCAGTCCTGAATTTACAAGAAAATTCTCTCTCTGGATCCATCCCTGATCTCAAGCTTCCAAGTCTGAGACTATTGAATCTGAGCAACAATGATTTGAAAGGCCAAATTCCTCAGTCGCTTCAAACATTTCCAAATGGCTCATTCTTGGGGAATCCTGGATTATGTGGGCCACCTCTAGCTAAATGCTTGCTTCCTGATTCACCGACGCCTTCACCAGCATCCCCTTCATCAGCACCAACTCCAATGTCAGCGCATCATGAGAAAAAGTTTGG ] [+] EMBL AK103917 [ AAAGTTTGGCGCCGGATTCATAATTGCAGTTGCTGTTGGGGGCTTCGCAGTACTGATGTTTGTTGTGGTTGTGTTGGTTGTGTGTAATTCAAAGAGGAAAGGCAAGAAAGAGAGTGGTGTGGACTACAAGGGTAAGGGCACTGGTGTCAGAAGTGAGAAGCCAAAACAGGAGTTCAGTAGTGGCGTTCAGATCGCCGAGAAAAACAAGTTGGTTTTCTTGGAGGGTTGCTCCTATACCTTCGATTTGGAGGATCTACTGAGAGCTTCTGCAGAAGTCCTTGGCAAGGGAAGTTATGGAACTGCTTACAAAGCTATACTTGAGGATGGTACCGTTGTTGTTGTCAAGAGACTAAAAGATGTCGTGGCAGGAAAAAAAGAGTTTGAGCAACAGATGGAACTAATTGGTAGGTTAGGTAAACATGCAAACTTAGTCCCACTTCGTGCTTACTACTATTCTAAGGACGAGAAGCTCATCGTCTACGATTATCTCACCAATGGCAGTTTCTCAACCAAGTTACATGGTATCAGGGGTGTTACTGAAAAGACACCATTAGACTGGAGCACCAGAGTGAAGATAATCCTTGGAACAGCATACGGCATTGCACACGTTCATGCAGAAGGTGGCGCCAAGCTCACCCATGGCAATATTAAGTCTACAAATATCCTCCTCGATCAAGATTACAGTTCTTATGTTTCAGACTATGGTCTAACTGCCCTGATGAGTGTTCCAGCCAATGCATCTCGCGTTGTGGTCGGTTATCGCGCTCCTGAGACCATCGAGAACCGCAAGATCACCCAGAAATCCGACGTCTACAGCTTCGGCGTCCTCCTCATGGAGATGCTTACCGGTAAAGCTCCACTCCAGTCGCAGGGCAATGACGATGTCGTCGACCTACCAAGATGGGTGCACTCGGTGGTCAGAGAGGAGTGGACAGCCGAGGTGTTCGACGTCGAGCTGATCAAGCAGCAAAACATCGAGGAGGAGCTTGTTCAGATGCTCCAGATAGCAATGGCTTGCACATCAAGGTCTC CAGATCGACGCCCATCGATGGAGGATGTGATCAGGATGATCGAGGGACTGCGCCATTCTGCTTCAGAGAGCCGAGCTTCCTCTGATGAAAAGATGAAGGACTCCAATCCACCACCGGTTTAGTTATGTGCTCCTGTGTTCATATGCCTCACCAAGCTGCGAGTTGCAGATCATTTGATTCTTAGCTAATTTGTGATTGAGTTCATGCTAAACATGGTCGACATTAGATGCAGCCTCAGAAAGCTGAGCATATTCTGATTGGAACTTATGAGTCTTGAATTCTTGATTCTTGACAAGTGTAGGATTTTTTTCTCTGGGAATTTTGATTGTT ] [+] EMBL CA755870 [ ACTACTATTCTAAGGACGAGAAGCTCATCGTCTACGATTATCTCACCAATGGCAGTTTCTCAACCAAGTTACATGGTATCAGGGGTGTTACTGAAAAGACACCATTAGACTGGAGCACCAGAGTGAAGATAATCCTTGGAACAGCATACGGCATTGCACACGTTCATGCAGAAGGTGGCGCCAAGCTCACCCATGGCAATATTAAGTCTACAAATATCCTCCTCGATCAAGATTACAGTTCTTATGTTTCAGACTATGGTCTAACTGCCCTGATGAGTGTTCCAGCCAATGCATCTCGCGTTGTGGTCGGTTATCGCGCTCCTGAGACCATCGAGAACCGCAAGATCACCCAGAAATCCGACGTCTACAGCTTCGGCGTCCTCCTCATGGAGATGCTTACCGGTAAAGCTCCACTCCAGTCGCAGGGCAATGACGATGTCGTCGACCTACCAAGATGGGTGCACTCGGTGGTCAGAGAGGAGTGGACAGCCGAGGTGTTCGACGTCGAGCTGATCAAGCAGCAAAACATCGAGGAGGAGCTTGTTCAGATGCTCCAGATAGCAATGGCTTGCACATCAAGGTCTC CAGATCGACGCCCATCGATGGAGGATG ] consensusID : consensus_11250#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 327 fasta sequence [GCCGCTGTGGCAACAGGCTCATACTGGAGTCAGAAGCACATCATTGGTGTATCTTGCGCATGGCGTAAAATGCTCATGGAGGATCAGTCACACATATTGTGAATTAAGGGTACCATGTGCTGGTCTCATTGGAGCAATTCCTCCAAACACTCTTGGAAAGCTTGACTCTACTCCAAGTTCCTGAGCTTACGGTCTAATCGTGTAGCTTGGAAGCCTCCCATCTGATGTGACTACGTCTTCCCTTCCTTGACGATCCATATACCTTGCAAACACAATAAACTTTTCACGGAGATTTAGCCTATCCTTTTTAGAATCCGGAGCCTACAG] [+] EMBL AU225335 [GCCGCTGTGGCAACAGGCTCATACTGGAGTCAGAAGCACATCATTGGTGTATCTTGCGCATGGCGTAAAATGCTCATGGAGGATCAGTCACACATATTGTGAATTAAGGGTACCATGTGCTGGTCTCATTGGAGCAATTCCTCCAAACACTCTTGGAAAGCTTGACTCTACTCCAAGTTCCTGAGCTTACGGTCTAATCGTGTAGCTTGGAAGCCTCCCATCTGATGTGACTACGTCTTCCCTTCCTTGACGATCCATATACCTTGCAAACACAATAAACTTTTCACGGAGATTTAGCCTATCCTTTTTAGAATCCGGAGCCTACAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11250#0 CAAGCGAAGTCCTCTCTCTTCACACTTCACACACGCTCTCGGTCTCGGTCTCTCGCTTTT 60 consensus_11250#1 ------------------------------------------------------------ consensus_11250#0 TACCACACTACTCTGCTGCGACCGCGAAGGGAGGGGTGTGTGTGGGTTGGATCAACTACC 120 consensus_11250#1 ------------------------------------------------------------ consensus_11250#0 CCAGCTACTGCCGTGCCGAGGGAAGCGGGAGCGCCGCCCTAGCGACCGCAACTGCAGGCG 180 consensus_11250#1 ------------------------------------------------------------ consensus_11250#0 CGCATTTCACGGGATTCCGTGGGCTGTGCTGTGCTGTACAGACCGGCGACGAGCCGCCGC 240 consensus_11250#1 ------------------------------------------------------------ consensus_11250#0 CGCCGTGGAGGATCGGCTACTTATCTGACATAAACAAACGAAGATGCTGCTCGTCTAGTT 300 consensus_11250#1 ------------------------------------------------------------ consensus_11250#0 CCCTGATTTGGAGATTCATCAAATGGATCATCTCAGTATTAGAAATCCTTTGTCTCTTCT 360 consensus_11250#1 ------------------------------------------------------------ consensus_11250#0 GCTCTCACTGCAGTTGTCACTTTTGTTGTTCAATCCCTTGTCTGTAGCAGACTTAACCTC 420 consensus_11250#1 ------------------------------------------------------------ consensus_11250#0 TGAAAAGCAAGCCCTTCTAGACTTTGCCTCTGCAGTGTATCGTGGCAACAGGCTCA-ACT 479 consensus_11250#1 -----------------------------------GCCGCTGTGGCAACAGGCTCATACT 25 *************** *** consensus_11250#0 GGAGTCA-AAGCACATCATTG-TGT-TCTTG-GCATGGCGTAAAATGCTCA--GGAGATC 533 consensus_11250#1 GGAGTCAGAAGCACATCATTGGTGTATCTTGCGCATGGCGTAAAATGCTCATGGAGGATC 85 ******* ************* *** ***** ******************* * **** consensus_11250#0 AGTCACACATATT-TGAATTAAGGGTACCAGGTGCTGGTCTCATTGGAGCAATTCCTCCA 592 consensus_11250#1 AGTCACACATATTGTGAATTAAGGGTACCATGTGCTGGTCTCATTGGAGCAATTCCTCCA 145 ************* **************** ***************************** consensus_11250#0 AACACTCTTGGAAAGCTTGACTCT-CTCCAAGTTC-TGAGCTTACGGTCTAATCGTTTAG 650 consensus_11250#1 AACACTCTTGGAAAGCTTGACTCTACTCCAAGTTCCTGAGCTTACGGTCTAATCGTGTAG 205 ************************ ********** ******************** *** consensus_11250#0 CT-GGAAGCCTTCCATCTGATGTGACTACGCTT--CCTTCCTT-ACGATCCATATACCTT 706 consensus_11250#1 CTTGGAAGCCTCCCATCTGATGTGACTACGTCTTCCCTTCCTTGACGATCCATATACCTT 265 ** ******** ****************** * ******** **************** consensus_11250#0 C--AGCACAATAA-CTTTTCA-GGAGATTT-GCCT-TCCTTTTT-GAATCCTAACCTCAG 759 consensus_11250#1 GCAAACACAATAAACTTTTCACGGAGATTTAGCCTATCCTTTTTAGAATCCGGAGCCTAC 325 * ******** ******* ******** **** ******** ****** * * * consensus_11250#0 TGTAGTGGACCTCTCCTACAATTCCTTTACCGGTGAAATTCCTATAAGCTTACAAAACCT 819 consensus_11250#1 AG---------------------------------------------------------- 327 * consensus_11250#0 TTCTCAGTTATCAGTCCTGAATTTACAAGAAAATTCTCTCTCTGGATCCATCCCTGATCT 879 consensus_11250#1 ------------------------------------------------------------ consensus_11250#0 CAAGCTTCCAAGTCTGAGACTATTGAATCTGAGCAACAATGATTTGAAAGGCCAAATTCC 939 consensus_11250#1 ------------------------------------------------------------ consensus_11250#0 TCAGTCGCTTCAAACATTTCCAAATGGCTCATTCTTGGGGAATCCTGGATTATGTGGGCC 999 consensus_11250#1 ------------------------------------------------------------ consensus_11250#0 ACCTCTAGCTAAATGCTTGCTTCCTGATTCACCGACGCCTTCACCAGCATCCCCTTCATC 1059 consensus_11250#1 ------------------------------------------------------------ consensus_11250#0 AGCACCAACTCCAATGTCAGCGCATCATGAGAAAAAGTTTGGCGCCGGATTCATAATTGC 1119 consensus_11250#1 ------------------------------------------------------------ consensus_11250#0 AGTTGCTGTTGGGGGCTTCGCAGTACTGATGTTTGTTGTGGTTGTGTTGGTTGTGTGTAA 1179 consensus_11250#1 ------------------------------------------------------------ consensus_11250#0 TTCAAAGAGGAAAGGCAAGAAAGAGAGTGGTGTGGACTACAAGGGTAAGGGCACTGGTGT 1239 consensus_11250#1 ------------------------------------------------------------ consensus_11250#0 CAGAAGTGAGAAGCCAAAACAGGAGTTCAGTAGTGGCGTTCAGATCGCCGAGAAAAACAA 1299 consensus_11250#1 ------------------------------------------------------------ consensus_11250#0 GTTGGTTTTCTTGGAGGGTTGCTCCTATACCTTCGATTTGGAGGATCTACTGAGAGCTTC 1359 consensus_11250#1 ------------------------------------------------------------ consensus_11250#0 TGCAGAAGTCCTTGGCAAGGGAAGTTATGGAACTGCTTACAAAGCTATACTTGAGGATGG 1419 consensus_11250#1 ------------------------------------------------------------ consensus_11250#0 TACCGTTGTTGTTGTCAAGAGACTAAAAGATGTCGTGGCAGGAAAAAAAGAGTTTGAGCA 1479 consensus_11250#1 ------------------------------------------------------------ consensus_11250#0 ACAGATGGAACTAATTGGTAGGTTAGGTAAACATGCAAACTTAGTCCCACTTCGTGCTTA 1539 consensus_11250#1 ------------------------------------------------------------ consensus_11250#0 CTACTATTCTAAGGACGAGAAGCTCATCGTCTACGATTATCTCACCAATGGCAGTTTCTC 1599 consensus_11250#1 ------------------------------------------------------------ consensus_11250#0 AACCAAGTTACATGGTATCAGGGGTGTTACTGAAAAGACACCATTAGACTGGAGCACCAG 1659 consensus_11250#1 ------------------------------------------------------------ consensus_11250#0 AGTGAAGATAATCCTTGGAACAGCATACGGCATTGCACACGTTCATGCAGAAGGTGGCGC 1719 consensus_11250#1 ------------------------------------------------------------ consensus_11250#0 CAAGCTCACCCATGGCAATATTAAGTCTACAAATATCCTCCTCGATCAAGATTACAGTTC 1779 consensus_11250#1 ------------------------------------------------------------ consensus_11250#0 TTATGTTTCAGACTATGGTCTAACTGCCCTGATGAGTGTTCCAGCCAATGCATCTCGCGT 1839 consensus_11250#1 ------------------------------------------------------------ consensus_11250#0 TGTGGTCGGTTATCGCGCTCCTGAGACCATCGAGAACCGCAAGATCACCCAGAAATCCGA 1899 consensus_11250#1 ------------------------------------------------------------ consensus_11250#0 CGTCTACAGCTTCGGCGTCCTCCTCATGGAGATGCTTACCGGTAAAGCTCCACTCCAGTC 1959 consensus_11250#1 ------------------------------------------------------------ consensus_11250#0 GCAGGGCAATGACGATGTCGTCGACCTACCAAGATGGGTGCACTCGGTGGTCAGAGAGGA 2019 consensus_11250#1 ------------------------------------------------------------ consensus_11250#0 GTGGACAGCCGAGGTGTTCGACGTCGAGCTGATCAAGCAGCAAAACATCGAGGAGGAGCT 2079 consensus_11250#1 ------------------------------------------------------------ consensus_11250#0 TGTTCAGATGCTCCAGATAGCAATGGCTTGCACATCAAGGTCTCCAGATCGACGCCCATC 2139 consensus_11250#1 ------------------------------------------------------------ consensus_11250#0 GATGGAGGATGTGATCAGGATGATCGAGGGACTGCGCCATTCTGCTTCAGAGAGCCGAGC 2199 consensus_11250#1 ------------------------------------------------------------ consensus_11250#0 TTCCTCTGATGAAAAGATGAAGGACTCCAATCCACCATCGGTTTAGTTATGTGCTCCTGT 2259 consensus_11250#1 ------------------------------------------------------------ consensus_11250#0 GTTCATATGCCTCACCAAGCTGCGAGTTGCAGATCATTTGATTCTTAGCTAATTTGTGAT 2319 consensus_11250#1 ------------------------------------------------------------ consensus_11250#0 TGAGTTCATGCTAAACATGGTCGACATTAGATGCAGCCTCAGAAAGCTGAGCATATTCTG 2379 consensus_11250#1 ------------------------------------------------------------ consensus_11250#0 ATTGGAACTTATGAGTCTTGAATTCTTGATTCTTGACAAGTGTAGGATTTTTTTCTCTGG 2439 consensus_11250#1 ------------------------------------------------------------ consensus_11250#0 GAATTTTGATTGTTGGAATTGTGCATTTTGTGGTGTGATTTCATTATTTCGGCCGA 2495 consensus_11250#1 -------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||