cluster # 11280

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Oryza sativa
cluster # 11280 cluster # 11280 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11280#0 length = 1965 sequences # 6

consensus_11280#1 length = 556 sequences # 2

consensusID : consensus_11280#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1965
fasta sequence

                              [TCGCCTTCCACTCGCGGGAGGCTCTTATCGCCAAAAACCCTCTCCTCCCCGGCGGCAGCTTCGTGGCGGCGGGTTCGATGAGGCCGTCGCCCATGGCGGTGCGGGCGGCGGGTGGCTGCTCCACGGCGGCGGCGGCGACGCTCGCCTTCTTCCGCCTCCGTCCCCTCGGCCGCGCCGTCCGCCCGGACTCCGCTCGCGCCGGCTGGCACTTCTCCCTGTACGGCGGATGCCGGGGACGCCAGGTCCATGGCCTCGTCGACTCCGTCCTGGAGGAGCTCCGATCACAGAGGCGTGGTCGGGTTTCGGCAAAGATAGGATTGCAGGGGACAAAGGAACTGTCTGACAATAAGATAGATAAGAGAACATTGCAGAAAGGCCTGCTTCTTGAATTTCAGAAAGATTCTGAGAGATTTTTGCTTGCTGTTGTAGAAAGGCCCGATGGAAAGAAAAGCTGGAAGGTGACTGACCAGAATGGTATATTGTCTTCTATAAAACCCCAGCAGGTTACATATGTTATACCTGGTATCATCAATTACAATCATTCAAGAATAGATGAATTTATCAAGAAAGCACAAGATCTTTTGGACCCTACTGTTTTGGAGTGTGCTTGGATGGAGCTTTCTGAGAATGATAAATCAGTAACAGTAGAGGAGTTCGCAGAGATAGTTTATGGTAGCAAGGAGTCTCTGGAAAGCTACTGTGCACACTTCTTGTTATCAAGGGACATAGTCTATTTTGTCAAGGTCGAAAGCCGGGATTCTTCTGTGTACCAACCTCGCCCACCTGCTCAGGTGGAGGAACTCTTACGACGGAAACTTGCTAAAGAGGCAGCTGAGAAGGAGATGGAAGAATTTGTCCAGTTAATCAAGTCTGCCAAAGCATTGCCTCTAGATGCTAAACCTTCAAAAGATTCATGGTTGATGGAGGAGAAAGTTAAGCGAAAAATTGAGTCACTTCAGGCATATGCAGTTGATGCATGTGATGATGAACAAAGGAGAACGGCAGGAAACATTCTCAAGGCTATGGGCTTTTCAAAGACTTCATCAGCTGCTCTAAAGATCCTTATAAATATTGGATACTTCCCTGTGCATGTCAATCTTGATCTTTACAGGTATGATGTTCGCATCAGGTACACTGAGGAAGTTTTGTCAGCTGCAGAGGAACTTCTGGTAGACTGTCCTGACTCAGACAAGGATATCAGGAAGGATCTCTCAACTTTGAAAGTGTATGCTATTGATGTGGATGAAGCTGATGAGCTTGATGATGCACTAAGTGCTGCTAGATTACCTGATGGTAGGATAAAGGTCTGGATACATGTTGCTGACCCAACAAGCTTGGTTCAACCCCGGAGCATCATTGACAGGGAAGCAATGCACAGAGGAACCTCGATCTTTTTACCAACTGCTACCTTTCCAATGTTCCCAGAGAGGCTTGCTATGAATGCTATGAGCCTGC-ACAAGGCAGGGGTTGTAAATCTGTTACTGTATCTGTGATTTTGCAGCCAGATGGAAGTATTGCAGAATATAGTATAGAGAATTCAATCATAAAACCTACCTACATGTTAACA-TATGAGAGTGCAACTGAACTACTGTATATGAACCTGGAAGAAGAGGAAGAACTGAGAATTCTTCAAGAAGCTGCTTCCCTTCGTGCACAGTGGCGTCGTAGTCAGGAGAGCCAAATGACTTGTGCTCCTCCATCAGCAGGACTTAGCAAGTCATAAGCGGAAGTTGCCTCCTTGTCAATGTCACCATCCAGCATGTTCTCAAGTGTAGTTCAAATACCATTGGACTTTATTTATAGGAGCCATGTGAACCATTCAAAGAGCCTAGTATTCCCTTGCCTAGCTGGGAGTGATAAACATTCAAAAGTTATCAATACATTGTCTTTTTATGAGTCATCTGTGATTAGCAAATGAAAGCAGAATGAAATGCAACTGTAATTTTCTTATAAAGCGAGATACAC]

[+] EMBL CB637184             [TCGCCTTCCACTCGCGGGAGGCTCTTATCGCCAAAAACCCTCTCCTCCCCGGCGGCAGCTTCGTGGCGGCGGGTTCGATGAGGCCGTCGCCCATGGCGGTGCGGGCGGCGGGTGGCTGCTCCACGGCGGCGGCGGCGACGCTCGCCTTCTTCCGCCTGCGTGCCCTCGGCCGCGCCGTCCGCCCGGACTCCGCTCGCGCCGGCTGGCACTTCTCCCTGTACGGCGGATGCCGGGGACGCCAGGTCCATGGCCTCGTCGACTCCGTCCTGGAGGAGCTCCGATCACAGAGGCGTGGTCGGGTTTCGGCAAAGATAGGATTGCAGGGGACAAAGGAACTGTCTGACAATAAGATAGATAAGAGAACATTGCCCAAAGGCCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AK111196             [   CCTTCCACTCGCGGGAGGCTCTTATCGCCAAAAACCCTCTCCTCCCCGGCGGCAGCTTCGTGGCGGCGGGTTCGATGAGGCCGTCGCCCATGGCGGTGCGGGCGGCGGGTGGCTGCTCCACGGCGGCGGCGGCGACGCTCGCCTTCTTCCGCCTCCGTCCCCTCGGCCGCGCCGTCCGCCCGGACTCCGCTCGCGCCGGCTGGCACTTCTCCCTGTACGGCGGATGCCGGGGACGCCAGGTCCATGGCCTCGTCGACTCCGTCCTGGAGGAGCTCCGATCACAGAGGCGTGGTCGGGTTTCGGCAAAGATAGGATTGCAGGGGACAAAGGAACTGTCTGACAATAAGATAGATAAGAGAACATTGCAGAAAGGCCTGCTTCTTGAATTTCAGAAAGATTCTGAGAGATTTTTGCTTGCTGTTGTAGAAAGGCCCGATGGAAAGAAAAGCTGGAAGGTGACTGACCAGAATGGTATATTGTCTTCTATAAAACCCCAGCAGGTTACATATGTTATACCTGGTATCATCAATTACAATCATTCAAGAATAGATGAATTTATCAAGAAAGCACAAGATCTTTTGGACCCTACTGTTTTGGAGTGTGCTTGGATGGAGCTTTCTGAGAATGATAAATCAGTAACAGTAGAGGAGTTCGCAGAGATAGTTTATGGTAGCAAGGAGTCTCTGGAAAGCTACTGTGCACACTTCTTGTTATCAAGGGACATAGTCTATTTTGTCAAGGTCGAAAGCCGGGATTCTTCTGTGTACCAACCTCGCCCACCTGCTCAGGTGGAGGAACTCTTACGACGGAAACTTGCTAAAGAGGCAGCTGAGAAGGAGATGGAAGAATTTGTCCAGTTAATCAAGTCTGCCAAAGCATTGCCTCTAGATGCTAAACCTTCAAAAGATTCATGGTTGATGGAGGAGAAAGTTAAGCGAAAAATTGAGTCACTTCAGGCATATGCAGTTGATGCATGTGATGATGAACAAAGGAGAACGGCAGGAAACATTCTCAAGGCTATGGGCTTTTCAAAGACTTCATCAGCTGCTCTAAAGATCCTTATAAATATTGGATACTTCCCTGTGCATGTCAATCTTGATCTTTACAGGTATGATGTTCGCATCAGGTACACTGAGGAAGTTTTGTCAGCTGCAGAGGAACTTCTGGTAGACTGTCCTGACTCAGACAAGGATATCAGGAAGGATCTCTCAACTTTGAAAGTGTATGCTATTGATGTGGATGAAGCTGATGAGCTTGATGATGCACTAAGTGCTGCTAGATTACCTGATGGTAGGATAAAGGTCTGGATACATGTTGCTGACCCAACAAGCTTGGTTCAACCCCGGAGCACCATTGACAGGGAAGCAATGCACAGAGGAACCTCGATCTTTTTACCAACTGCTACCTTTCCAATGTTCCCAGAGAGGCTTGCTATGAATGCTATGAGCCTGCAACAAGGCAGGGGTTGTAAATCTGTTACTGTATCTGTGATTTTGCAGCCAGATGGAAGTATTGCAGAATATAGTATAGAGAATTCAATCATAAAACCTACCTACATGTTAACA TATGAGAGTGCAACTGAACTACTGTATATGAACCTGGAAGAAGAGGAAGAACTGAGAATTCTTCAAGAAGCTGCTTCCCTTCGTGCACAGTGGCGTCGTAGTCAGGAGAGCCAAATGACTTGTGCTCCTCCATCAGCAGGACTTAGCAAGTCATAAGCGGAAGTTGCCTCCTTGTCAATGTCACCATCCAGCATGTTCTCAAGTGTAGTTCAAATACCATTGGACTTTATTTATAGGAGCCATGTGAACCATTCAAAGAGCCTAGTATTCCCTTGCCTAGCTGGGAGTGATAAACATTCAAAAGTTATCAATACATTGTCTTTTTATGAGTCATCTGTGATTAGCAAATGAAAGCAGAATGAAATGCAACTGTAATTTTCTTATAAAGCGAGATACAC]
[+] EMBL CB667198             [                                                                                AGGCCGTCGCCCATGGCGGTGCGGGCGGCGGGTGGCTGCTCCACGGCGGCGGCGGCGACGCTCGCCTTCTTCCGCCTCCGTCCCCTCGGCCGCGCCGTCCGCCCGGACTCCGCTCGCGCCGGCTGGCACTTCTCCCTGTACGGCGGATGCCGGGGACGCCAGGTCCATGGCCTCGTCGACTCCGTCCTGGAGGAGCTCCGATCACAGAGGCGTGGTCGGGTTTCGGCAAAGATAGGATTGCAGGGGACAAAGGAACTGTCTGACAATAAGATAGATAAGAGAACATTGCAGAAAGGCCTGCTTCTTGAATTTCAGAAAGATTCTGAGAGATTTTTGCTTGCTGTTGTAGAAAGGCCCGATGGAAAGAAAAACTGGAAGGTGACTGACCAGAATGGTATATTGTCTTCTATAAAACCCCAGCAGGTTACATATGTTATACCTGGTATCATCAATTACAATCATTCAAGAATAGATGAATTTATCAAGAAAGCACAAGATCTTTTGGACCCTACTGTTTTGGAGTGTGCTTGGATGGAGCTTTCTGAGAATGATAAATCAGTAACAGTAGAGGAGTTCGCAGAGATAGTTTATGGTAGCAAGGAGTCTCTGGAAAGCTACTGTGCACACTTCTTGTTATCAAGGGACATAGTCTATTTTGTCAAGGTCGAAAGCCGGGATTCTTCTGTGTACCAACCTCGCCCACCTGCTCAGGTGGAGGAACTCTTACGACGGAAACTTGCTAAAGAGGCAGCTGAGAAGGAGATGGAAGAATTTGTCCAGTTAATCAAGTCTGCCAAAGCATTGCCTCTAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CF307462             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AGTCTCTGGAAAGCTACTGTGCACACTTCTTGTTATCAAGGGACATAGTCTATTTTGTCAAGGTCGAAAGCCGGGATTCTTCTGTGTACCAACCTCGCCCACCTGCTCAGGTGGAGGAACTCTTACGACGGAAACTTGCTAAAGAGGCAGCTGAGAAGGAGATGGAAGAATTTGTCCAGTTAATCAAGTCTGCCAAAGCATTGCCTCTAGATGCTAAACCTTCAAAAGATTCATGGTTGATGGAGGAGAAAGTTAAGCGAAAAATTGAGTCACTTCAGGCATATGCAGTTGATGCATGTGATGATGAACAAAGGAGAACGGCAGGAAACATTCTCAAGGCTATGGGCTTTTCAAAGACTTCATCAGCTGCTCTAAAGATCCTTATAAATATTGGATACTTCCCTGTGCATGTCAATCTTGATCTTTACAGGTATGATGTTCGCATCAGGTACACTGAGGAAGTTTTGTCAGCTGCAGAGGAACTTCTGGTAGACTGTCCTGACTCAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CF324637             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               cagATTCTCAAGGCTATGGGCTTTTCAAAGACTTCATCAGCTGCTCTAAAGATCCTTATAAATATTGGATACTTCCCTGTGCATGTCAATCTTGATCTTTACAGGTATGATGTTCGCATCAGGTACACTGAGGAAGTTTTGTCAGCTGCAGAGGAACTTCTGGTAGACTGTCCTGACTCAGACAAGGATATCAGGAAGGATCTCTCAACTTTGAAAGTGTATGCTATTGATGTGGATGAAGCTGATGAGCTTGATGATGCACTAAGTGCTGCTAGATTACCTGATGGTAGGATAAAGGTCTGGATACATGTTGCTGACCCAACAAGCTTGGTTCAACCCCGGAGCATCATTGACAGGGAAGCAATGCACAGAGGAACCTCGATCTTTTTACCAACTGCTACCTTTCCAATGTTCCCAGAGAGGCTTGCTATGAATGCTATGAGCCTGC ACAAGGCAGGGGTTGTAAATCTGTTACTGTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CF323290             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TCAGGTACACTGAGGAAGTTTTGTCAGCTGCAGAGGAACTTCTGGTAGACTGTCCTGACTCAGACAAGGATATCAGGAAGGATCTCTCAACTTTGAAAGTGTATGCTATTGATGTGGATGAAGCTGATGAGCTTGATGATGCACTAAGTGCTGCTAGATTACCTGATGGTAGGATAAAGGTCTGGATACATGTTGCTGACCCAACAAGCTTGGTTCAACCCCGGAGCATCATTGACAGGGAAGCAATGCACAGAGGAACCTCGATCTTTTTACCAACTGCTACCTTTCCAATGTTCCCAGAGAGGCTTGCTATGAATGCTATGAGCCTGC ACAAGGCAGGGGTTGTAAATCTGTTACTGTATCTGTGATTTTGCAGCCAGATGGAAGTATTGCAGAATATAGTATAGAGAATTCAATCATAAAACCTACCTACATGTTAACANTATGAGAGTGCAACTGAACTACTGTATATGAACCTGGAAGAAGAGGAAGAACTGAGAATTCTTCAAGAAGCTGCTTCCCT                                                                                                                                                                                                                                                                                                                              ]




>consensus_11280#0
TCGCCTTCCACTCGCGGGAGGCTCTTATCGCCAAAAACCCTCTCCTCCCCGGCGGCAGCT
TCGTGGCGGCGGGTTCGATGAGGCCGTCGCCCATGGCGGTGCGGGCGGCGGGTGGCTGCT
CCACGGCGGCGGCGGCGACGCTCGCCTTCTTCCGCCTCCGTCCCCTCGGCCGCGCCGTCC
GCCCGGACTCCGCTCGCGCCGGCTGGCACTTCTCCCTGTACGGCGGATGCCGGGGACGCC
AGGTCCATGGCCTCGTCGACTCCGTCCTGGAGGAGCTCCGATCACAGAGGCGTGGTCGGG
TTTCGGCAAAGATAGGATTGCAGGGGACAAAGGAACTGTCTGACAATAAGATAGATAAGA
GAACATTGCAGAAAGGCCTGCTTCTTGAATTTCAGAAAGATTCTGAGAGATTTTTGCTTG
CTGTTGTAGAAAGGCCCGATGGAAAGAAAAGCTGGAAGGTGACTGACCAGAATGGTATAT
TGTCTTCTATAAAACCCCAGCAGGTTACATATGTTATACCTGGTATCATCAATTACAATC
ATTCAAGAATAGATGAATTTATCAAGAAAGCACAAGATCTTTTGGACCCTACTGTTTTGG
AGTGTGCTTGGATGGAGCTTTCTGAGAATGATAAATCAGTAACAGTAGAGGAGTTCGCAG
AGATAGTTTATGGTAGCAAGGAGTCTCTGGAAAGCTACTGTGCACACTTCTTGTTATCAA
GGGACATAGTCTATTTTGTCAAGGTCGAAAGCCGGGATTCTTCTGTGTACCAACCTCGCC
CACCTGCTCAGGTGGAGGAACTCTTACGACGGAAACTTGCTAAAGAGGCAGCTGAGAAGG
AGATGGAAGAATTTGTCCAGTTAATCAAGTCTGCCAAAGCATTGCCTCTAGATGCTAAAC
CTTCAAAAGATTCATGGTTGATGGAGGAGAAAGTTAAGCGAAAAATTGAGTCACTTCAGG
CATATGCAGTTGATGCATGTGATGATGAACAAAGGAGAACGGCAGGAAACATTCTCAAGG
CTATGGGCTTTTCAAAGACTTCATCAGCTGCTCTAAAGATCCTTATAAATATTGGATACT
TCCCTGTGCATGTCAATCTTGATCTTTACAGGTATGATGTTCGCATCAGGTACACTGAGG
AAGTTTTGTCAGCTGCAGAGGAACTTCTGGTAGACTGTCCTGACTCAGACAAGGATATCA
GGAAGGATCTCTCAACTTTGAAAGTGTATGCTATTGATGTGGATGAAGCTGATGAGCTTG
ATGATGCACTAAGTGCTGCTAGATTACCTGATGGTAGGATAAAGGTCTGGATACATGTTG
CTGACCCAACAAGCTTGGTTCAACCCCGGAGCATCATTGACAGGGAAGCAATGCACAGAG
GAACCTCGATCTTTTTACCAACTGCTACCTTTCCAATGTTCCCAGAGAGGCTTGCTATGA
ATGCTATGAGCCTGCACAAGGCAGGGGTTGTAAATCTGTTACTGTATCTGTGATTTTGCA
GCCAGATGGAAGTATTGCAGAATATAGTATAGAGAATTCAATCATAAAACCTACCTACAT
GTTAACATATGAGAGTGCAACTGAACTACTGTATATGAACCTGGAAGAAGAGGAAGAACT
GAGAATTCTTCAAGAAGCTGCTTCCCTTCGTGCACAGTGGCGTCGTAGTCAGGAGAGCCA
AATGACTTGTGCTCCTCCATCAGCAGGACTTAGCAAGTCATAAGCGGAAGTTGCCTCCTT
GTCAATGTCACCATCCAGCATGTTCTCAAGTGTAGTTCAAATACCATTGGACTTTATTTA
TAGGAGCCATGTGAACCATTCAAAGAGCCTAGTATTCCCTTGCCTAGCTGGGAGTGATAA
ACATTCAAAAGTTATCAATACATTGTCTTTTTATGAGTCATCTGTGATTAGCAAATGAAA
GCAGAATGAAATGCAACTGTAATTTTCTTATAAAGCGAGATACAC

consensusID : consensus_11280#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 556
fasta sequence

                              [TACCTGATGGTAGGATAAAGGTCTGGA-ACATGTTGCTGACCCAACAAGCTTGGTTCAACCCCGGAGCATCATTGACAGGGAAGCAATGCACAGAGGAACCTCGATCTTTTTACCAACTGCTACCTTTCCAATGTTCCCAGAGAGGCTTGCTATGAATGCTATGAGCCTGCAACAAGGCATGGGTTGTAAATCTGTTACTGTATCTGTGATTTTGCAGCCAGATGGAAGGTATCCTACTCTCTTAATATTGCTTTTCTCTTGCTTGTTATAGCAAAATTGTTGAGAACTATATTTGTGTTGTTCATAGTATTGCAGAATATAGTATAGAGAATTCAATCATAAAACCTACCTACATGTTAACATATGAGAGTGCAACTGAACTACTGTATATGAACCTGGAAGAAGAGGAAGAACTGAGAATTCTTCAAGAAGCTGCTTCCCTTCGTGCACAGTGGCGTCGTAGTCAGGGTTCGATTGATACTGCTATGATAGAACCACGTATCAAGGTGGCAAATCCTGATGATCCTGAACCAAACATTAATCTATATGTTGAAGA]

[+] EMBL CB641280             [TACCTGATGGTAGGATAAAGGTCTGGA ACATGTTGCTGACCCAACAAGCTTGGTTCAACCCCGGAGCATCATTGACAGGGAAGCAATGCACAGAGGAACCTCGATCTTTTTACCAACTGCTACCTTTCCAATGTTCCCAGAGAGGCTTGCTATGAATGCTATGAGCCTGCAACAAGGCATGGGTTGTAAATCTGTTACTGTATCTGTGATTTTGCAGCCAGATGGAAGGTATCCTACTCTCTTAATATTGCTTTTCTCTTGCTTGTTATAGCAAAATTGTTGAGAACTATATTTGTGTTGTTCATAGTATTGCAGAATATAGTATAGAGAATTCAATCATAAAACCTACCTACATGTTAACATATGAGAGTGCAACTGAACTACTGTATATGAACCTGGAAGAAGAGGAAGAACTGAGAATTCTTCAAGAAGCTGCTTCCCTTCGTGCACAGTGGCGTCGTAGTCAGGGTTCGATTGATACTGCTATGATAGAACCACGTATCAAGGTGGCAAATCCTGATGATCCTGAACCAAACATTAATCTATATGTTGAAGA]
[+] EMBL CB638423             [TACCTGATGGTAGGATAAAGGTCTGGATACATGTTGCTGACCCAACAAGCTTGGTTCAACCCCGGAGCATCATTGACAGGGAAGCAATGCACAGAGGAACCTCGATCTTTTTACCAACTGCTACCTTTCCAATGTTCCCAGAGAGGCTTGCTATGAATGCTATGAGCCTGCAACAAGGCAGGGGTTGTAAATCTGTTACTGTATCTGTGATTTTGCAGCCAGATGGAAGGTATCCTACTATCTTAATATTGCTTTTCTCTTGCTTGTTATAGCAAAATTGTTGAGAACTATATTTGTGTTGTTCATAGTATTGCAGAATATAGTATAGAGAATTCAATCATAAAACCTACCTACATGTTAACATATGAGAGTGCAACTGAACTACTGTATATGAACCTGGAAGAAGAGGAAGAACTGAGAATTCTTCAAGAAGCTGCTTCCCTTCGTGCACAGTGGCGTCGTAGTCAAGGTTCGATTGATACTGCTATGATAGAACCACGTATCAAAGTGGCAAATCCTGATGATCCTGAA                          ]




>consensus_11280#1
TACCTGATGGTAGGATAAAGGTCTGGAACATGTTGCTGACCCAACAAGCTTGGTTCAACC
CCGGAGCATCATTGACAGGGAAGCAATGCACAGAGGAACCTCGATCTTTTTACCAACTGC
TACCTTTCCAATGTTCCCAGAGAGGCTTGCTATGAATGCTATGAGCCTGCAACAAGGCAT
GGGTTGTAAATCTGTTACTGTATCTGTGATTTTGCAGCCAGATGGAAGGTATCCTACTCT
CTTAATATTGCTTTTCTCTTGCTTGTTATAGCAAAATTGTTGAGAACTATATTTGTGTTG
TTCATAGTATTGCAGAATATAGTATAGAGAATTCAATCATAAAACCTACCTACATGTTAA
CATATGAGAGTGCAACTGAACTACTGTATATGAACCTGGAAGAAGAGGAAGAACTGAGAA
TTCTTCAAGAAGCTGCTTCCCTTCGTGCACAGTGGCGTCGTAGTCAGGGTTCGATTGATA
CTGCTATGATAGAACCACGTATCAAGGTGGCAAATCCTGATGATCCTGAACCAAACATTA
ATCTATATGTTGAAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11280#0      TCGCCTTCCACTCGCGGGAGGCTCTTATCGCCAAAAACCCTCTCCTCCCCGGCGGCAGCT 60
consensus_11280#1      ------------------------------------------------------------
                                                                                   

consensus_11280#0      TCGTGGCGGCGGGTTCGATGAGGCCGTCGCCCATGGCGGTGCGGGCGGCGGGTGGCTGCT 120
consensus_11280#1      ------------------------------------------------------------
                                                                                   

consensus_11280#0      CCACGGCGGCGGCGGCGACGCTCGCCTTCTTCCGCCTCCGTCCCCTCGGCCGCGCCGTCC 180
consensus_11280#1      ------------------------------------------------------------
                                                                                   

consensus_11280#0      GCCCGGACTCCGCTCGCGCCGGCTGGCACTTCTCCCTGTACGGCGGATGCCGGGGACGCC 240
consensus_11280#1      ------------------------------------------------------------
                                                                                   

consensus_11280#0      AGGTCCATGGCCTCGTCGACTCCGTCCTGGAGGAGCTCCGATCACAGAGGCGTGGTCGGG 300
consensus_11280#1      ------------------------------------------------------------
                                                                                   

consensus_11280#0      TTTCGGCAAAGATAGGATTGCAGGGGACAAAGGAACTGTCTGACAATAAGATAGATAAGA 360
consensus_11280#1      ------------------------------------------------------------
                                                                                   

consensus_11280#0      GAACATTGCAGAAAGGCCTGCTTCTTGAATTTCAGAAAGATTCTGAGAGATTTTTGCTTG 420
consensus_11280#1      ------------------------------------------------------------
                                                                                   

consensus_11280#0      CTGTTGTAGAAAGGCCCGATGGAAAGAAAAGCTGGAAGGTGACTGACCAGAATGGTATAT 480
consensus_11280#1      ------------------------------------------------------------
                                                                                   

consensus_11280#0      TGTCTTCTATAAAACCCCAGCAGGTTACATATGTTATACCTGGTATCATCAATTACAATC 540
consensus_11280#1      ------------------------------------------------------------
                                                                                   

consensus_11280#0      ATTCAAGAATAGATGAATTTATCAAGAAAGCACAAGATCTTTTGGACCCTACTGTTTTGG 600
consensus_11280#1      ------------------------------------------------------------
                                                                                   

consensus_11280#0      AGTGTGCTTGGATGGAGCTTTCTGAGAATGATAAATCAGTAACAGTAGAGGAGTTCGCAG 660
consensus_11280#1      ------------------------------------------------------------
                                                                                   

consensus_11280#0      AGATAGTTTATGGTAGCAAGGAGTCTCTGGAAAGCTACTGTGCACACTTCTTGTTATCAA 720
consensus_11280#1      ------------------------------------------------------------
                                                                                   

consensus_11280#0      GGGACATAGTCTATTTTGTCAAGGTCGAAAGCCGGGATTCTTCTGTGTACCAACCTCGCC 780
consensus_11280#1      ------------------------------------------------------------
                                                                                   

consensus_11280#0      CACCTGCTCAGGTGGAGGAACTCTTACGACGGAAACTTGCTAAAGAGGCAGCTGAGAAGG 840
consensus_11280#1      ------------------------------------------------------------
                                                                                   

consensus_11280#0      AGATGGAAGAATTTGTCCAGTTAATCAAGTCTGCCAAAGCATTGCCTCTAGATGCTAAAC 900
consensus_11280#1      ------------------------------------------------------------
                                                                                   

consensus_11280#0      CTTCAAAAGATTCATGGTTGATGGAGGAGAAAGTTAAGCGAAAAATTGAGTCACTTCAGG 960
consensus_11280#1      ------------------------------------------------------------
                                                                                   

consensus_11280#0      CATATGCAGTTGATGCATGTGATGATGAACAAAGGAGAACGGCAGGAAACATTCTCAAGG 1020
consensus_11280#1      ------------------------------------------------------------
                                                                                   

consensus_11280#0      CTATGGGCTTTTCAAAGACTTCATCAGCTGCTCTAAAGATCCTTATAAATATTGGATACT 1080
consensus_11280#1      ------------------------------------------------------------
                                                                                   

consensus_11280#0      TCCCTGTGCATGTCAATCTTGATCTTTACAGGTATGATGTTCGCATCAGGTACACTGAGG 1140
consensus_11280#1      ------------------------------------------------------------
                                                                                   

consensus_11280#0      AAGTTTTGTCAGCTGCAGAGGAACTTCTGGTAGACTGTCCTGACTCAGACAAGGATATCA 1200
consensus_11280#1      ------------------------------------------------------------
                                                                                   

consensus_11280#0      GGAAGGATCTCTCAACTTTGAAAGTGTATGCTATTGATGTGGATGAAGCTGATGAGCTTG 1260
consensus_11280#1      ------------------------------------------------------------
                                                                                   

consensus_11280#0      ATGATGCACTAAGTGCTGCTAGATTACCTGATGGTAGGATAAAGGTCTGGATACATGTTG 1320
consensus_11280#1      ------------------------TACCTGATGGTAGGATAAAGGTCTGGA-ACATGTTG 35
                                               *************************** ********

consensus_11280#0      CTGACCCAACAAGCTTGGTTCAACCCCGGAGCATCATTGACAGGGAAGCAATGCACAGAG 1380
consensus_11280#1      CTGACCCAACAAGCTTGGTTCAACCCCGGAGCATCATTGACAGGGAAGCAATGCACAGAG 95
                       ************************************************************

consensus_11280#0      GAACCTCGATCTTTTTACCAACTGCTACCTTTCCAATGTTCCCAGAGAGGCTTGCTATGA 1440
consensus_11280#1      GAACCTCGATCTTTTTACCAACTGCTACCTTTCCAATGTTCCCAGAGAGGCTTGCTATGA 155
                       ************************************************************

consensus_11280#0      ATGCTATGAGCCTGCA-CAAGGCAGGGGTTGTAAATCTGTTACTGTATCTGTGATTTTGC 1499
consensus_11280#1      ATGCTATGAGCCTGCAACAAGGCATGGGTTGTAAATCTGTTACTGTATCTGTGATTTTGC 215
                       **************** ******* ***********************************

consensus_11280#0      AGCCAGATGGAAG----------------------------------------------- 1512
consensus_11280#1      AGCCAGATGGAAGGTATCCTACTCTCTTAATATTGCTTTTCTCTTGCTTGTTATAGCAAA 275
                       *************                                               

consensus_11280#0      --------------------------------TATTGCAGAATATAGTATAGAGAATTCA 1540
consensus_11280#1      ATTGTTGAGAACTATATTTGTGTTGTTCATAGTATTGCAGAATATAGTATAGAGAATTCA 335
                                                       ****************************

consensus_11280#0      ATCATAAAACCTACCTACATGTTAACATATGAGAGTGCAACTGAACTACTGTATATGAAC 1600
consensus_11280#1      ATCATAAAACCTACCTACATGTTAACATATGAGAGTGCAACTGAACTACTGTATATGAAC 395
                       ************************************************************

consensus_11280#0      CTGGAAGAAGAGGAAGAACTGAGAATTCTTCAAGAAGCTGCTTCCCTTCGTGCACAGTGG 1660
consensus_11280#1      CTGGAAGAAGAGGAAGAACTGAGAATTCTTCAAGAAGCTGCTTCCCTTCGTGCACAGTGG 455
                       ************************************************************

consensus_11280#0      CGTCGTAGTCAGGAGAGCCAAATGACTTGTGCTCCTCCATCAGCAGGACTTAGCAAGTCA 1720
consensus_11280#1      CGTCGTAGTCAGGG------TTCGATTGATACTGCTATGATAGAACCACGTATCAAGGTG 509
                       *************          ** *  * ** **     ** *  ** ** ****   

consensus_11280#0      TAAGCGGAAGTTGCCTCCTTGTCAATGTCACCATCCAGCATGTTCTCAAGTGTAGTTCAA 1780
consensus_11280#1      GCAAATCCTGATGATCCTGAACCAA--ACATTAATCTATATGTTGAAGA----------- 556
                         *      * **   *     ***   **  *  *   *****    *           

consensus_11280#0      ATACCATTGGACTTTATTTATAGGAGCCATGTGAACCATTCAAAGAGCCTAGTATTCCCT 1840
consensus_11280#1      ------------------------------------------------------------
                                                                                   

consensus_11280#0      TGCCTAGCTGGGAGTGATAAACATTCAAAAGTTATCAATACATTGTCTTTTTATGAGTCA 1900
consensus_11280#1      ------------------------------------------------------------
                                                                                   

consensus_11280#0      TCTGTGATTAGCAAATGAAAGCAGAATGAAATGCAACTGTAATTTTCTTATAAAGCGAGA 1960
consensus_11280#1      ------------------------------------------------------------
                                                                                   

consensus_11280#0      TACAC 1965
consensus_11280#1      -----