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Oryza sativa
cluster # 11282 cluster # 11282       Sequences # 8       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11282#0 length = 2877 sequences # 5  
 consensus_11282#1 length = 428 sequences # 2  
consensus_11282#2 length = 354 sequences # 1  
consensusID : consensus_11282#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 2877
fasta sequence 
                              [CCTTGAGTCGCGTAAAAGAAAAAGAAAAATCTCCCGTCTCGTTCTCGTCGTCTCCTCCGCTCCGCTCGTTGCGCCGCCGCCAAGACGAGCAGGGGAGGGCCGGGCGGCGATCTCCATCCGGCGAGCAGCGGAGGGGAGGGGATCCTGATGGATGCCGCAGCTCTTCAGTATGAGAACCAGAAGCTGGTGCAGCAATTGGAGGCACAGAAGTCCAAAATGCGTGCATTGGAAGGCAAGTTCAAGGAGCTGAGGGATGAGCAATGTTCTTACGACAATACATTGATTTGTTTGAATAAAATGTGGAATCAGCTGATTGATGATTTAGTGCTGC-TTGGGGTTCGAGCTGGTGGGGA-TTTAAACGG-TTTGC-AAGCGC-TTGATCATGAAGAGATGTCAGAAGAATCTC-TTGAGTCATGTCCTTCTGA-GGAGATATTT-CTCTTCAGACTCTTGAATTCCAGGAATTTCAGAAATAATGATGACAGTAGCCTGTCAAAATTAGTTGAGGAAGCTCTTGCCTTGCGCTATTCAACAACAGTTACTCTGATGAAGTCCCTGCAAGAGGCTTTTGCTGTACAGCAGGCTAGAAGTGAATCTTTATCATTAGCTTTAAATGGACAGAACTCCAGTGAAGACGTTATTGTGGCCCTTGAAAACCATAATGATTACTTGAAAGAAGTGGTTGACAATTTACGTCAAGCTGTGTCTATCATCAACAGGAAGCACGAAAAGTATCTGGATGAGATTGAGGCTTTCAAAAACAATCAATCAAGAGAACTACATGAAGTAAAGTGTCTTTCAGGTGAGCTAGAGGAAAGCATGGCAGAGCTTGAGGAAAGCCGTCGAAAGTTGGCTGTTCTCCAGTTGCAAACGGGTGGAGGCTCACTGATGAACACATCTGCTCCTAACGGTGTGAACGGTAGTGTTTCAACTGATAAATCTTCAGACAAGGGTATGGGCTGGCGAGATCTGAAAGATGCTGTTGAGGAGGCTAAGACTCTTGCTGCAAACCGCCTATTTGAACTCCATGAGACTCAAGAGGATAATCTGATACTATCCAAGCAGTTGGAAGATATTCAGGATCAATTAAAAGATGAGAACTATATTGTTACATCAAAACCATATACGATTCTCAGTGACCAGTTACACCATCTGAATGCTGAGATAGAGCGATACAGGGGGTTAGTTGAAGTGCTACAGAATGAAAAGGACCAGCTCATGCAAAAGGAAGAAGAAATGCTTGCAAAGGCAGAATCAGTGGACGCTGTTCAACAATCCATTACCACTTACAAGGCCAAAATTGAGGACCTGGAACATGAAATCCAGAAACTTATGGCTGAAAAGAATGATCTTGAGATCAAGGCTGAGGAAGCCTTGCAAGATTCAGGGAAAAAAGACTTCAAGGACGAGATTCATGTTATGGCTGCATCACTCTCCAAAGAGATGGAATTGTTGGACAATCAAATGAATAGATCCAAGGATGCGGCTTCTGAAGCACTTGCACTACGTGAGGAAGCTGACTATTTAAGAACTTTGCTAGCTAAGAAGATTGATGAACAAAAGGAGATATCTGATAGATACAACACACAAGTCACCGAGATCAAATCCCTCAAAGCATTGATTGAGACACTGGACCAGGAAAAGCAGGAGTTACAATTTATAGTGGATATGCTCGGTAAAGAATGTTCTGAGTCGAGGGCAATTTCAGAGATTGAAGAATCAGAAAACCGAGCTCGCAAGCAAGCTGAATATTTGAGAAAATGTTTAGAAGAGCATAATCTTGAACTTCGAGTAAAAGCAGCAAATGAAGCGGAAACTGCATGCCAACAAAGGCTTTCAATTGCTGAAGCAGAACTGGAAGACTTAAGGGCCAAAGTGGATGCATCGGAAAGAGATGTTATGAAACTCAAGGAGTCAATAAGAATTAAAGAAGCTGAAGTAGATGGCCATATTTCTGAAATTGAGACAATTGGTCAAGCATATGAAGACATGCAAACCCAAAATCAGCACCTTCTTCAACAGGTTGCTGATAGAGATGATTTTAACATAAAGCTAGTATCAGATAGTGTAAAGATGAAGCAAGCCTATGGTTCCCTTCTTGCTGAAAAGAATATGCTACAGAAGCAACTTCAGCATGTCAACAGTTCACTGGAGTCATCTAAACTAAAAATCACCAGTGGTGAAGAGCAGATGAAGACCTATGTAGCACAAGCTATGAAATCTTCTTCAGAGAATAGGCATCTTGCAATTAGCCTTGAAAGGACTATGCTGGAGGTATCAGATGCAGAGAAGGAGCTCAAGTGGCTTCGGTCCGCTACTGGATCTGCTGAGAAAGAATATGAGATAAATCAGAAAAAAATAGCTGAGCTAAAAATGGAGCTAGAGCGTGAGAGAAATGAGAGGATAAAGCTTGAGGAAGAATACGAAGAGGTGAAAAACGAAGTCAGTGAGCTAACCTCAGAAACTGAAGAGACTACTATACAGAAGCTCCAAGATGAAATAAAAGAATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGGAACCTTGAGATCCGCCACCGCAAATGCCCAGGTTGTGGCACCCCCTTTGGACAGAGTGACGTTCGGGAGGTGAAGATCTGAAGCGTCAGCAAAACAGCTTGAATGACTGACTTGGTAGCGAGCATGTAAATATATAGTAGTAGTGCTAGTTTCTGTTTTCTTGGAGGACAGATATTAGATCGAATTGTCTTGGTGTGCCTCTGCCAAGACTGCCATGTAGAAACTATTATTATTATCACCTAAAAATAGTGCAATTGCGGGGATCAAAAAAAAAGA]

[+] EMBL AK103864             [CCTTGAGTCGCGTAAAAGAAAAAGAAAAATCTCCCGTCTCGTTCTCGTCGTCTCCTCCGCTCCGCTCGTTGCGCCGCCGCCAAGACGAGCAGGGGAGGGCCGGGCGGCGATCTCCATCCGGCGAGCAGCGGAGGGGAGGGGATCCTGATGGATGCCGCAGCTCTTCAGTATGAGAACCAGAAGCTGGTGCAGCAATTGGAGGCACAGAAGTCCAAAATGCGTGCATTGGAAGGCAAGTTCAAGGAGCTGAGGGATGAGCAATGTTCTTACGACAATACATTGATTTGTTTGAATAAAATGTGGAATCAGCTGATTGATGATTTAGTGCTGC TTGGGGTTCGAGCTGGTGGGGA TTTAAACGG TTTGC AAGCGC TTGATCATGAAGAGATGTCAGAAGAATCTC TTGAGTCATGTCCTTCTGA GGAGATATTT CTCTTCAGACTCTTGAATTCCAGGAATTTCAGAAATAATGATGACAGTAGCCTGTCAAAATTAGTTGAGGAAGCTCTTGCCTTGCGCTATTCAACAACAGTTACTCTGATGAAGTCCCTGCAAGAGGCTTTTGCTGTACAGCAGGCTAGAAGTGAATCTTTATCATTAGCTTTAAATGGACAGAACTCCAGTGAAGACGTTATTGTGGCCCTTGAAAACCATAATGATTACTTGAAAGAAGTGGTTGACAATTTACGTCAAGCTGTGTCTATCATCAACAGGAAGCACGAAAAGTATCTGGATGAGATTGAGGCTTTCAAAAACAATCAATCAAGAGAACTACATGAAGTAAAGTGTCTTTCAGGTGAGCTAGAGGAAAGCATGGCAGAGCTTGAGGAAAGCCGTCGAAAGTTGGCTGTTCTCCAGTTGCAAACGGGTGGAGGCTCACTGATGAACACATCTGCTCCTAACGGTGTGAACGGTAGTGTTTCAACTGATAAATCTTCAGACAAGGGTATGGGCTGGCGAGATCTGAAAGATGCTGTTGAGGAGGCTAAGACTCTTGCTGCAAACCGCCTATTTGAACTCCATGAGACTCAAGAGGATAATCTGATACTATCCAAGCAGTTGGAAGATATTCAGGATCAATTAAAAGATGAGAACTATATTGTTACATCAAAACCATATACGATTCTCAGTGACCAGTTACACCATCTGAATGCTGAGATAGAGCGATACAGGGGGTTAGTTGAAGTGCTACAGAATGAAAAGGACCAGCTCATGCAAAAGGAAGAAGAAATGCTTGCAAAGGCAGAATCAGTGGACGCTGTTCAACAATCCATTACCACTTACAAGGCCAAAATTGAGGACCTGGAACATGAAATCCAGAAACTTATGGCTGAAAAGAATGATCTTGAGATCAAGGCTGAGGAAGCCTTGCAAGATTCAGGGAAAAAAGACTTCAAGGACGAGATTCATGTTATGGCTGCATCACTCTCCAAAGAGATGGAATTGTTGGACAATCAAATGAATAGATCCAAGGATGCGGCTTCTGAAGCACTTGCACTACGTGAGGAAGCTGACTATTTAAGAACTTTGCTAGCTAAGAAGATTGATGAACAAAAGGAGATATCTGATAGATACAACACACAAGTCACCGAGATCAAATCCCTCAAAGCATTGATTGAGACACTGGACCAGGAAAAGCAGGAGTTACAATTTATAGTGGATATGCTCGGTAAAGAATGTTCTGAGTCGAGGGCAATTTCAGAGATTGAAGAATCAGAAAACCGAGCTCGCAAGCAAGCTGAATATTTGAGAAAATGTTTAGAAGAGCATAATCTTGAACTTCGAGTAAAAGCAGCAAATGAAGCGGAAACTGCATGCCAACAAAGGCTTTCAATTGCTGAAGCAGAACTGGAAGACTTAAGGGCCAAAGTGGATGCATCGGAAAGAGATGTTATGAAACTCAAGGAGTCAATAAGAATTAAAGAAGCTGAAGTAGATGGCCATATTTCTGAAATTGAGACAATTGGTCAAGCATATGAAGACATGCAAACCCAAAATCAGCACCTTCTTCAACAGGTTGCTGATAGAGATGATTTTAACATAAAGCTAGTATCAGATAGTGTAAAGATGAAGCAAGCCTATGGTTCCCTTCTTGCTGAAAAGAATATGCTACAGAAGCAACTTCAGCATGTCAACAGTTCACTGGAGTCATCTAAACTAAAAATCACCAGTGGTGAAGAGCAGATGAAGACCTATGTAGCACAAGCTATGAAATCTTCTTCAGAGAATAGGCATCTTGCAATTAGCCTTGAAAGGACTATGCTGGAGGTATCAGATGCAGAGAAGGAGCTCAAGTGGCTTCGGTCCGCTACTGGATCTGCTGAGAAAGAATATGAGATAAATCAGAAAAAAATAGCTGAGCTAAAAATGGAGCTAGAGCGTGAGAGAAATGAGAGGATAAAGCTTGAGGAAGAATACGAAGAGGTGAAAAACGAAGTCAGTGAGCTAACCTCAGAAACTGAAGAGACTACTATACAGAAGCTCCAAGATGAAATAAAAGAATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGGAACCTTGAGATCCGCCACCGCAAATGCCCAGGTTGTGGCACCCCCTTTGGACAGAGTGACGTTCGGGAGGTGAAGATCTGAAGCGTCAGCAAAACAGCTTGAATGACTGACTTGGTAGCGAGCATGTAAATATATAGTAGTAGTGCTAGTTTCTGTTTTCTTGGAGGACAGATATTAGATCGAATTGTCTTGGTGTGCCTCTGCCAAGACTGCCATGTAGAAACTATTATTATTATCACCTAAAAATAGTGCAAT                     ]
[+] EMBL C28166               [                    AAAGAAAAATCTCCCGTCTCGTTCTCGTCGTCTNCTCCGCTCCGCTCGTTGCGCCGCCGCCAAGACGAGCAGGGGAGGGCCGGGCGGCGATCTCCATCCGGCGAGCAGCGGAGGGGAGGGGATCCTGATGGATGCCGCAGCTCTTCAGTATGAGAACCAGAAGCTGGTGCAGCAATTGGAGGCACAGAAGTCCAAAATGCGTGCATTGGAAGGCAAGTTCAAGGAGCTGAGGGATGAGCAATGTTCTTACGACAATACATTGATTTGTTTGAATAAAATGTGGAATCAGCTGATTGATGATTTAGTGCTGCTTTGGGGTTCGAGCTTGTGGGGATTTTAAACGGTTTTTCAAAGCGCTTTGATCATGAAGAGATGTCAGAAGAATCTCTTTGGGTCATGTCCTTCTNAGGGNGATATTTCCTCTTCAag                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CB677577             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TGTTTCAACTGATAAATCTTCAGACAAGGGTATGGGCTGGCGAGATCTGAAAGATGCTGTTGAGGGGGCTAAGACTCTTGCTGCAAACCGCCTATTTGAACTCCATGAGACTCAAGAGGATAATCTGATACTATCCAAGCAGTTGGAAGATATTCAGGATCAATTAAAAGATGAGAACTATATTGTTACATCAAAACCATATACGATTCTCAGTGACCAGTTACACCATCTGAATGCTGAGATAGAGCGATACAGGGGGTTAGTTGAAGTGCTACAGAATGAAAAGGACCAGCTCATGCAAAAGGAAGAAGAAATGCTTGCAAAGGCAGAATCAGTGGACGCTGTTCAACAATCCATTACCACTTACAAGGCCAAAATTGAGGACCTGGAACATGAAATCCAGAAACTTATGGCTGAAAAGAATGATCTTGAGATCAAGGCTGAGGAAGCCTTGCAAGATTCAGGGAAAAAAGACTTCAAGGACGAGATTCATGTTATGGCTGCATCACTCTCCAAAGAGATGGAATTGTTGGACAATCAAATGAATAGATCCAAGGATGCGGCTTCTGAAGCACTTGCACTACGTGAGGAAGCTGACTATTTAAGAACTTTGCTAGCTAAGAAGATTGATGAACAAAAGGAGATATCTGATAGATACAACACACAAGTCACCGAGATCAAATCCCTCAAAGCATTGATTGAGACACTGGACCAGGAAAAGCAGGAGTTACAATTTATAGTGGATATGCTCGGTAAAGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CB677578             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         aTTTAACATAAAGCTAGTATCAGATAGTGTANAGATGAAGCAAGCCTATGGTTCCCTTCTTGCTGAAAAGAATATGCTACAGAAGCAACTTCAGCATGTCAACAGTTCACTGGAGTCATCTAAACTAAAAATCACCAGTGGTGAAGAGCAGATGAAGACCTATGTAGCACAAGCTATGAAATCTTCTTCAGAGAATAGGCATCTTGCAATTAGCCTTGAAAGGACTATGCTGGAGGTATCAGATGCAGAGAAGGAGCTCAAGTGGCTTCGGTCCGCTACTGGATCTGCTGAGAAAGAATATGAGATAAATCAGAAAAAAATAGCTGAGCTAAAAATGGAGCTAGAGCGTGAGAGAAATGAGAGGATAAAGCTTGAGGAAGGATACGAAGAGGTGAAAAACGAAGTCAGTGAGCTAACCTCAGAAACTGAAGAGACTACTATACAGAAGCTCCAAGATGAAATAAAAGAATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGGAACCTTGAGATCCGCCACCGCAAATGCCCAGGTTGTGGCACCCCCTTTGGACAGAGTGACGTTCGGGAGGTGAAGATCTGAAGCGTCAGCAAAACAGCTTGAATGACTGACTTGGTAGCGAGCATGTAAATATATAGTAGTAGTGCTAGTTTCTGTTTTCTTGGAGGACAGATATTAGATCGAATTGTCTTGGTGTGCCTCTGCCAAGACTGCCATGTAGAAACTATTATTATTATCACCTAAAAATAGTGCAATTGCGGGGATCAAAAAAAAAGA]
[-] EMBL CA759211             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        tTATGTAGCACCAGCTATGAAATCTTTTTCAGAGAATAGGCATCTTGCAATTAGCCCTGAAAGGACTATGCCGGAGGTATCAGATGCAGAGAAGGAGCTCAAGTGGCTTCGGTCCGCTACTGGATTTGCTGAGAAAGAATCTGAGATAAATCAGAAAAAAATAGCTGAGCTAAAAATGGAGCTAGAGCGTGAGAGAAATGAGAGGAGAAAGCTTGAGGAAGAATACGAAGAGGTGAAAAACGAAGTCAGTGAGCTAACCTCAGAAACTGAAGAGACTACTATACAGAAGCTCCAAGATGAAATAAAAGAATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGGAACCTTGAGATCCGCCACCGCAAATGCCCAGGTTGTGGCACCCCCTTTGGACAGAGTGACGTTCGGGAGGTGAAGATTTGAAGCGTCAGCAAAACAGCTTGAATGACTGACTTGGTAGCGAGCTTGTAAATATATAGTAGTAGTGCTAGTTTCTGTTTTCTTGGAGGACAGATATTAGATCGAATTGTCTTGGTGTGCCTCTGCCAAGACTGCCATGTAGAAACTATTATTATTATCACCTAAAAATAGTGCAATTGCGGGGAAAAAAAAAAA   ]




>consensus_11282#0
CCTTGAGTCGCGTAAAAGAAAAAGAAAAATCTCCCGTCTCGTTCTCGTCGTCTCCTCCGC
TCCGCTCGTTGCGCCGCCGCCAAGACGAGCAGGGGAGGGCCGGGCGGCGATCTCCATCCG
GCGAGCAGCGGAGGGGAGGGGATCCTGATGGATGCCGCAGCTCTTCAGTATGAGAACCAG
AAGCTGGTGCAGCAATTGGAGGCACAGAAGTCCAAAATGCGTGCATTGGAAGGCAAGTTC
AAGGAGCTGAGGGATGAGCAATGTTCTTACGACAATACATTGATTTGTTTGAATAAAATG
TGGAATCAGCTGATTGATGATTTAGTGCTGCTTGGGGTTCGAGCTGGTGGGGATTTAAAC
GGTTTGCAAGCGCTTGATCATGAAGAGATGTCAGAAGAATCTCTTGAGTCATGTCCTTCT
GAGGAGATATTTCTCTTCAGACTCTTGAATTCCAGGAATTTCAGAAATAATGATGACAGT
AGCCTGTCAAAATTAGTTGAGGAAGCTCTTGCCTTGCGCTATTCAACAACAGTTACTCTG
ATGAAGTCCCTGCAAGAGGCTTTTGCTGTACAGCAGGCTAGAAGTGAATCTTTATCATTA
GCTTTAAATGGACAGAACTCCAGTGAAGACGTTATTGTGGCCCTTGAAAACCATAATGAT
TACTTGAAAGAAGTGGTTGACAATTTACGTCAAGCTGTGTCTATCATCAACAGGAAGCAC
GAAAAGTATCTGGATGAGATTGAGGCTTTCAAAAACAATCAATCAAGAGAACTACATGAA
GTAAAGTGTCTTTCAGGTGAGCTAGAGGAAAGCATGGCAGAGCTTGAGGAAAGCCGTCGA
AAGTTGGCTGTTCTCCAGTTGCAAACGGGTGGAGGCTCACTGATGAACACATCTGCTCCT
AACGGTGTGAACGGTAGTGTTTCAACTGATAAATCTTCAGACAAGGGTATGGGCTGGCGA
GATCTGAAAGATGCTGTTGAGGAGGCTAAGACTCTTGCTGCAAACCGCCTATTTGAACTC
CATGAGACTCAAGAGGATAATCTGATACTATCCAAGCAGTTGGAAGATATTCAGGATCAA
TTAAAAGATGAGAACTATATTGTTACATCAAAACCATATACGATTCTCAGTGACCAGTTA
CACCATCTGAATGCTGAGATAGAGCGATACAGGGGGTTAGTTGAAGTGCTACAGAATGAA
AAGGACCAGCTCATGCAAAAGGAAGAAGAAATGCTTGCAAAGGCAGAATCAGTGGACGCT
GTTCAACAATCCATTACCACTTACAAGGCCAAAATTGAGGACCTGGAACATGAAATCCAG
AAACTTATGGCTGAAAAGAATGATCTTGAGATCAAGGCTGAGGAAGCCTTGCAAGATTCA
GGGAAAAAAGACTTCAAGGACGAGATTCATGTTATGGCTGCATCACTCTCCAAAGAGATG
GAATTGTTGGACAATCAAATGAATAGATCCAAGGATGCGGCTTCTGAAGCACTTGCACTA
CGTGAGGAAGCTGACTATTTAAGAACTTTGCTAGCTAAGAAGATTGATGAACAAAAGGAG
ATATCTGATAGATACAACACACAAGTCACCGAGATCAAATCCCTCAAAGCATTGATTGAG
ACACTGGACCAGGAAAAGCAGGAGTTACAATTTATAGTGGATATGCTCGGTAAAGAATGT
TCTGAGTCGAGGGCAATTTCAGAGATTGAAGAATCAGAAAACCGAGCTCGCAAGCAAGCT
GAATATTTGAGAAAATGTTTAGAAGAGCATAATCTTGAACTTCGAGTAAAAGCAGCAAAT
GAAGCGGAAACTGCATGCCAACAAAGGCTTTCAATTGCTGAAGCAGAACTGGAAGACTTA
AGGGCCAAAGTGGATGCATCGGAAAGAGATGTTATGAAACTCAAGGAGTCAATAAGAATT
AAAGAAGCTGAAGTAGATGGCCATATTTCTGAAATTGAGACAATTGGTCAAGCATATGAA
GACATGCAAACCCAAAATCAGCACCTTCTTCAACAGGTTGCTGATAGAGATGATTTTAAC
ATAAAGCTAGTATCAGATAGTGTAAAGATGAAGCAAGCCTATGGTTCCCTTCTTGCTGAA
AAGAATATGCTACAGAAGCAACTTCAGCATGTCAACAGTTCACTGGAGTCATCTAAACTA
AAAATCACCAGTGGTGAAGAGCAGATGAAGACCTATGTAGCACAAGCTATGAAATCTTCT
TCAGAGAATAGGCATCTTGCAATTAGCCTTGAAAGGACTATGCTGGAGGTATCAGATGCA
GAGAAGGAGCTCAAGTGGCTTCGGTCCGCTACTGGATCTGCTGAGAAAGAATATGAGATA
AATCAGAAAAAAATAGCTGAGCTAAAAATGGAGCTAGAGCGTGAGAGAAATGAGAGGATA
AAGCTTGAGGAAGAATACGAAGAGGTGAAAAACGAAGTCAGTGAGCTAACCTCAGAAACT
GAAGAGACTACTATACAGAAGCTCCAAGATGAAATAAAAGAATGCAAGGCTATTCTCAAG
TGTGGGGTGTGCTTCGACCGGCCGAAAGAGGTCGTGATCACCAAATGCTTCCACTTATTC
TGCTCGCCATGTATCCAGAGGAACCTTGAGATCCGCCACCGCAAATGCCCAGGTTGTGGC
ACCCCCTTTGGACAGAGTGACGTTCGGGAGGTGAAGATCTGAAGCGTCAGCAAAACAGCT
TGAATGACTGACTTGGTAGCGAGCATGTAAATATATAGTAGTAGTGCTAGTTTCTGTTTT
CTTGGAGGACAGATATTAGATCGAATTGTCTTGGTGTGCCTCTGCCAAGACTGCCATGTA
GAAACTATTATTATTATCACCTAAAAATAGTGCAATTGCGGGGATCAAAAAAAAAGA

consensusID : consensus_11282#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 428
fasta sequence 
                              [ATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGGAACCTTGAGATCCGCCNCCGCAAATGCCCAGGTTGTGGCACCCCCTTTGGACAGAGTGACGTTCGGGAGGTGAAGA-TNTGAAGCGTCAGCAAAACAGCTTGAATGACTGACTTGGTAGCGAGCATGTAAATATATAGTAGTAGTGCTAGTTTCTGTTTTCTTGGAGGACAGATATTAGATCGAATTGTCTTGGTGTGCCTCTGCCAAGACTGCCATGTAGAAACTATTATTATTATCACCTAAAAATAGTGCAATTGCGGGGATCTGATACTGACTGTGTCTGTTTTGCGTGTTGTATCATTAATTTATCTGTTAATTGAGGTACCGGCTAAAGTTGTTTTACAATTTACCCGGGAAATAATGCATTTTGAGTTTATTTATTGATCAAAAA]

[+] EMBL AU222554             [ATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGGAACCTTGAGATCCGCCNCCGCAAATGCCCAGGTTGTGGCACCCCCTTTGGACAGAGTGACGTTCGGGAGGTGAAGA TNTGAAGCGTCAGCAAAACAGCTTGAATGACTGACTTGGTAGCGAGCATGTAAATATATAGTAGTAGTGCTAGTTTCTGTTTTCTTGGAGGACAGATATTAGATCGAATTGTCTTGGTGTGCCTCTGCCAAGACTGCCATGTAGAAACTATTATTATTATCACCTAAAAATAGTGCAATTGCGGGGATCTGATACTGACTGTGTCTGTTTTGCGTGTTGTATCATTAATTTATCTGTTAATTGAGGTACCGGCTAAAGTTGTTTTACAATTTACCCGGGAAATAATGCATTTTGAGTTTATTTATTGATCAAAAA]
[+] EMBL C97474               [                                                                                             nacCGTGCGGGAGNCGAAGATTCTGAAGCGTCAGCAAAACAGCTTG ATGACTGACTTGGTAGCGAGCATGTAAATATATAGTAGTAGTGCTAGTTTCTGTTTTCTTGGAGGACAGATATTAGATCGAATTGTCTTGGTGTGCCTCTGCCAAGACTGCCATGTAGAAACTATTATTATTATCACCTAAAAATAGTGCAATTGCGGGGATCTGATACTGACTGTGTCTGTTTTGCGTGTTGTATCATTAATTTATCTGTTAATTGAGGTACCGGCTAAAGTTGTTTTNCAATTTACCCGGGAAATAATGCATTTTGAGTTTATTTAaaaaaaa    ]




>consensus_11282#1
ATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGGAACCTTGAGATCCGCCNCCGCAA
ATGCCCAGGTTGTGGCACCCCCTTTGGACAGAGTGACGTTCGGGAGGTGAAGATNTGAAG
CGTCAGCAAAACAGCTTGAATGACTGACTTGGTAGCGAGCATGTAAATATATAGTAGTAG
TGCTAGTTTCTGTTTTCTTGGAGGACAGATATTAGATCGAATTGTCTTGGTGTGCCTCTG
CCAAGACTGCCATGTAGAAACTATTATTATTATCACCTAAAAATAGTGCAATTGCGGGGA
TCTGATACTGACTGTGTCTGTTTTGCGTGTTGTATCATTAATTTATCTGTTAATTGAGGT
ACCGGCTAAAGTTGTTTTACAATTTACCCGGGAAATAATGCATTTTGAGTTTATTTATTG
ATCAAAAA

consensusID : consensus_11282#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 354
fasta sequence 
                              [CGTCTCCTCCGCTCCGCTCGTTGCGCCGCCGCCAAGACGAGCAGGGGAGGGCCGGGCGGCGATCTCCATCCGGCGAGCAGCGGAGGGGAGGGGATCCTGCTCTTCAGTATGAGAACCAGAAGCTGGTGCAGCAATTGGAGGCACAGAAGTCCAAAATGCGTGCATTGGAAGGCAAGTTCAAGGAGCTGAGGGATGAGCAATGTTCTTACGACAATACATTGATTTGTTTGAATAAAATGTGGAATCAGCTGATTGATGATTTAGTGCTGCTTGGGGTTCGAGCTGGTGGGGATTTAAACGNTTTGCAAGCGCTTGATCATGTAGAGATGTCAGAAGNATCTCTTGAGTCATGTC]

[+] EMBL C28441               [CGTCTCCTCCGCTCCGCTCGTTGCGCCGCCGCCAAGACGAGCAGGGGAGGGCCGGGCGGCGATCTCCATCCGGCGAGCAGCGGAGGGGAGGGGATCCTGCTCTTCAGTATGAGAACCAGAAGCTGGTGCAGCAATTGGAGGCACAGAAGTCCAAAATGCGTGCATTGGAAGGCAAGTTCAAGGAGCTGAGGGATGAGCAATGTTCTTACGACAATACATTGATTTGTTTGAATAAAATGTGGAATCAGCTGATTGATGATTTAGTGCTGCTTGGGGTTCGAGCTGGTGGGGATTTAAACGNTTTGCAAGCGCTTGATCATGTAGAGATGTCAGAAGNATCTCTTGAGTCATGTC]




>consensus_11282#2
CGTCTCCTCCGCTCCGCTCGTTGCGCCGCCGCCAAGACGAGCAGGGGAGGGCCGGGCGGC
GATCTCCATCCGGCGAGCAGCGGAGGGGAGGGGATCCTGCTCTTCAGTATGAGAACCAGA
AGCTGGTGCAGCAATTGGAGGCACAGAAGTCCAAAATGCGTGCATTGGAAGGCAAGTTCA
AGGAGCTGAGGGATGAGCAATGTTCTTACGACAATACATTGATTTGTTTGAATAAAATGT
GGAATCAGCTGATTGATGATTTAGTGCTGCTTGGGGTTCGAGCTGGTGGGGATTTAAACG
NTTTGCAAGCGCTTGATCATGTAGAGATGTCAGAAGNATCTCTTGAGTCATGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11282#0      CCTTGAGTCGCGTAAAAGAAAAAGAAAAATCTCCCGTCTCGTTCTCGTCGTCTCCTCC-G 59
consensus_11282#2      ------------------------------------------------CGTCTCCTCC-G 11
consensus_11282#1      -----------------------------------------------ATGCTTCCACTTA 13
                                                                        *  *** *   

consensus_11282#0      CTCCGCTCGTTGCGCCGCCGCCAAGAC---GAG--------CAGGGGAGGGCCGGGCGGC 108
consensus_11282#2      CTCCGCTCGTTGCGCCGCCGCCAAGAC---GAG--------CAGGGGAGGGCCGGGCGGC 60
consensus_11282#1      TTCTGCTCGCCATGTATCCAGAGGAACCTTGAGATCCGCCNCCGCAAATGCCCAGGTTGT 73
                        ** *****    *   **      **   ***        * *   * * ** **  * 

consensus_11282#0      G--ATCTCCATCCGGC-GAGCAGCGGAGGGGAGGGGATCCTGATGGATGCCGCAGCTCTT 165
consensus_11282#2      G--ATCTCCATCCGGC-GAGCAGCGGAGGGGAGGGGATCCTG-------------CTCTT 104
consensus_11282#1      GGCACCCCCTTTGGACAGAGTGACGTTCGGGAGGTGAAGATNT--GAAGCGTCAGCAAAA 131
                       *  * * ** *  * * ***   **   ****** **   *              *    

consensus_11282#0      CAGTATGAGAACCAGAAGCTGGTGC-AGCAATTGGAGGCACAGAAGT----CCAAAATGC 220
consensus_11282#2      CAGTATGAGAACCAGAAGCTGGTGC-AGCAATTGGAGGCACAGAAGT----CCAAAATGC 159
consensus_11282#1      CAGCTTGAATGACTGACTTGGTAGCGAGCATGTAAATATATAGTAGTAGTGCTAGTTTCT 191
                       ***  ***    * **    *  ** ****  *  *   * ** ***    * *   *  

consensus_11282#0      GTGCA-TTGGAAGGCAAGTTCAAG---GAGCTGAGG-GATGAGCAA-TGTTCTTACGACA 274
consensus_11282#2      GTGCA-TTGGAAGGCAAGTTCAAG---GAGCTGAGG-GATGAGCAA-TGTTCTTACGACA 213
consensus_11282#1      GTTTTCTTGGAGGACAGATATTAGATCGAATTGTCTTGGTGTGCCTCTGCCAAGACTGCC 251
                       **    ***** * **  *   **   **  **    * ** **   **     **  * 

consensus_11282#0      ATACATTGATTTGTTTGAATAAAATGTGGAATCAGC-TGATTG--ATGATTTAGTGCTGC 331
consensus_11282#2      ATACATTGATTTGTTTGAATAAAATGTGGAATCAGC-TGATTG--ATGATTTAGTGCTGC 270
consensus_11282#1      ATGTAGAAACTATTATTATTATCACCTAAAAATAGTGCAATTGCGGGGATCTGATACTGA 311
                       **  *   * *  * * * **  *  *  **  **    ****    *** *  * *** 

consensus_11282#0      TTGGG---GTTCGAGCTGGTGGGGATTTAAACGGTTTGC-AAGCGCTTGATCATGAAGAG 387
consensus_11282#2      TTGGG---GTTCGAGCTGGTGGGGATTTAAACGNTTTGC-AAGCGCTTGATCATGTAGAG 326
consensus_11282#1      CTGTGTCTGTTTTGCGTGTTGTATCATTAATTTATCTGTTAATTGAGGTACCGGCTAAAG 371
                        ** *   ***     ** **     ****    * **  **  *    * *    * **

consensus_11282#0      ATGTCAGAAGAATCTCTTGAGTCATGTCCTTCTGAGGAGATATTTCTCTTCAGACTCTTG 447
consensus_11282#2      ATGTCAGAAGNATCTCTTGAGTCATGTC-------------------------------- 354
consensus_11282#1      TTGTTTTACAATTTACCCGGGAAATAATGCATTTTGAGTTTATTTATTGATCAAAAA--- 428
                        ***   *    *  *  * *  **                                   

consensus_11282#0      AATTCCAGGAATTTCAGAAATAATGATGACAGTAGCCTGTCAAAATTAGTTGAGGAAGCT 507
consensus_11282#2      ------------------------------------------------------------
consensus_11282#1      ------------------------------------------------------------
                                                                                   

consensus_11282#0      CTTGCCTTGCGCTATTCAACAACAGTTACTCTGATGAAGTCCCTGCAAGAGGCTTTTGCT 567
consensus_11282#2      ------------------------------------------------------------
consensus_11282#1      ------------------------------------------------------------
                                                                                   

consensus_11282#0      GTACAGCAGGCTAGAAGTGAATCTTTATCATTAGCTTTAAATGGACAGAACTCCAGTGAA 627
consensus_11282#2      ------------------------------------------------------------
consensus_11282#1      ------------------------------------------------------------
                                                                                   

consensus_11282#0      GACGTTATTGTGGCCCTTGAAAACCATAATGATTACTTGAAAGAAGTGGTTGACAATTTA 687
consensus_11282#2      ------------------------------------------------------------
consensus_11282#1      ------------------------------------------------------------
                                                                                   

consensus_11282#0      CGTCAAGCTGTGTCTATCATCAACAGGAAGCACGAAAAGTATCTGGATGAGATTGAGGCT 747
consensus_11282#2      ------------------------------------------------------------
consensus_11282#1      ------------------------------------------------------------
                                                                                   

consensus_11282#0      TTCAAAAACAATCAATCAAGAGAACTACATGAAGTAAAGTGTCTTTCAGGTGAGCTAGAG 807
consensus_11282#2      ------------------------------------------------------------
consensus_11282#1      ------------------------------------------------------------
                                                                                   

consensus_11282#0      GAAAGCATGGCAGAGCTTGAGGAAAGCCGTCGAAAGTTGGCTGTTCTCCAGTTGCAAACG 867
consensus_11282#2      ------------------------------------------------------------
consensus_11282#1      ------------------------------------------------------------
                                                                                   

consensus_11282#0      GGTGGAGGCTCACTGATGAACACATCTGCTCCTAACGGTGTGAACGGTAGTGTTTCAACT 927
consensus_11282#2      ------------------------------------------------------------
consensus_11282#1      ------------------------------------------------------------
                                                                                   

consensus_11282#0      GATAAATCTTCAGACAAGGGTATGGGCTGGCGAGATCTGAAAGATGCTGTTGAGGAGGCT 987
consensus_11282#2      ------------------------------------------------------------
consensus_11282#1      ------------------------------------------------------------
                                                                                   

consensus_11282#0      AAGACTCTTGCTGCAAACCGCCTATTTGAACTCCATGAGACTCAAGAGGATAATCTGATA 1047
consensus_11282#2      ------------------------------------------------------------
consensus_11282#1      ------------------------------------------------------------
                                                                                   

consensus_11282#0      CTATCCAAGCAGTTGGAAGATATTCAGGATCAATTAAAAGATGAGAACTATATTGTTACA 1107
consensus_11282#2      ------------------------------------------------------------
consensus_11282#1      ------------------------------------------------------------
                                                                                   

consensus_11282#0      TCAAAACCATATACGATTCTCAGTGACCAGTTACACCATCTGAATGCTGAGATAGAGCGA 1167
consensus_11282#2      ------------------------------------------------------------
consensus_11282#1      ------------------------------------------------------------
                                                                                   

consensus_11282#0      TACAGGGGGTTAGTTGAAGTGCTACAGAATGAAAAGGACCAGCTCATGCAAAAGGAAGAA 1227
consensus_11282#2      ------------------------------------------------------------
consensus_11282#1      ------------------------------------------------------------
                                                                                   

consensus_11282#0      GAAATGCTTGCAAAGGCAGAATCAGTGGACGCTGTTCAACAATCCATTACCACTTACAAG 1287
consensus_11282#2      ------------------------------------------------------------
consensus_11282#1      ------------------------------------------------------------
                                                                                   

consensus_11282#0      GCCAAAATTGAGGACCTGGAACATGAAATCCAGAAACTTATGGCTGAAAAGAATGATCTT 1347
consensus_11282#2      ------------------------------------------------------------
consensus_11282#1      ------------------------------------------------------------
                                                                                   

consensus_11282#0      GAGATCAAGGCTGAGGAAGCCTTGCAAGATTCAGGGAAAAAAGACTTCAAGGACGAGATT 1407
consensus_11282#2      ------------------------------------------------------------
consensus_11282#1      ------------------------------------------------------------
                                                                                   

consensus_11282#0      CATGTTATGGCTGCATCACTCTCCAAAGAGATGGAATTGTTGGACAATCAAATGAATAGA 1467
consensus_11282#2      ------------------------------------------------------------
consensus_11282#1      ------------------------------------------------------------
                                                                                   

consensus_11282#0      TCCAAGGATGCGGCTTCTGAAGCACTTGCACTACGTGAGGAAGCTGACTATTTAAGAACT 1527
consensus_11282#2      ------------------------------------------------------------
consensus_11282#1      ------------------------------------------------------------
                                                                                   

consensus_11282#0      TTGCTAGCTAAGAAGATTGATGAACAAAAGGAGATATCTGATAGATACAACACACAAGTC 1587
consensus_11282#2      ------------------------------------------------------------
consensus_11282#1      ------------------------------------------------------------
                                                                                   

consensus_11282#0      ACCGAGATCAAATCCCTCAAAGCATTGATTGAGACACTGGACCAGGAAAAGCAGGAGTTA 1647
consensus_11282#2      ------------------------------------------------------------
consensus_11282#1      ------------------------------------------------------------
                                                                                   

consensus_11282#0      CAATTTATAGTGGATATGCTCGGTAAAGAATGTTCTGAGTCGAGGGCAATTTCAGAGATT 1707
consensus_11282#2      ------------------------------------------------------------
consensus_11282#1      ------------------------------------------------------------
                                                                                   

consensus_11282#0      GAAGAATCAGAAAACCGAGCTCGCAAGCAAGCTGAATATTTGAGAAAATGTTTAGAAGAG 1767
consensus_11282#2      ------------------------------------------------------------
consensus_11282#1      ------------------------------------------------------------
                                                                                   

consensus_11282#0      CATAATCTTGAACTTCGAGTAAAAGCAGCAAATGAAGCGGAAACTGCATGCCAACAAAGG 1827
consensus_11282#2      ------------------------------------------------------------
consensus_11282#1      ------------------------------------------------------------
                                                                                   

consensus_11282#0      CTTTCAATTGCTGAAGCAGAACTGGAAGACTTAAGGGCCAAAGTGGATGCATCGGAAAGA 1887
consensus_11282#2      ------------------------------------------------------------
consensus_11282#1      ------------------------------------------------------------
                                                                                   

consensus_11282#0      GATGTTATGAAACTCAAGGAGTCAATAAGAATTAAAGAAGCTGAAGTAGATGGCCATATT 1947
consensus_11282#2      ------------------------------------------------------------
consensus_11282#1      ------------------------------------------------------------
                                                                                   

consensus_11282#0      TCTGAAATTGAGACAATTGGTCAAGCATATGAAGACATGCAAACCCAAAATCAGCACCTT 2007
consensus_11282#2      ------------------------------------------------------------
consensus_11282#1      ------------------------------------------------------------
                                                                                   

consensus_11282#0      CTTCAACAGGTTGCTGATAGAGATGATTTTAACATAAAGCTAGTATCAGATAGTGTAAAG 2067
consensus_11282#2      ------------------------------------------------------------
consensus_11282#1      ------------------------------------------------------------
                                                                                   

consensus_11282#0      ATGAAGCAAGCCTATGGTTCCCTTCTTGCTGAAAAGAATATGCTACAGAAGCAACTTCAG 2127
consensus_11282#2      ------------------------------------------------------------
consensus_11282#1      ------------------------------------------------------------
                                                                                   

consensus_11282#0      CATGTCAACAGTTCACTGGAGTCATCTAAACTAAAAATCACCAGTGGTGAAGAGCAGATG 2187
consensus_11282#2      ------------------------------------------------------------
consensus_11282#1      ------------------------------------------------------------
                                                                                   

consensus_11282#0      AAGACCTATGTAGCACAAGCTATGAAATCTTCTTCAGAGAATAGGCATCTTGCAATTAGC 2247
consensus_11282#2      ------------------------------------------------------------
consensus_11282#1      ------------------------------------------------------------
                                                                                   

consensus_11282#0      CTTGAAAGGACTATGCTGGAGGTATCAGATGCAGAGAAGGAGCTCAAGTGGCTTCGGTCC 2307
consensus_11282#2      ------------------------------------------------------------
consensus_11282#1      ------------------------------------------------------------
                                                                                   

consensus_11282#0      GCTACTGGATCTGCTGAGAAAGAATATGAGATAAATCAGAAAAAAATAGCTGAGCTAAAA 2367
consensus_11282#2      ------------------------------------------------------------
consensus_11282#1      ------------------------------------------------------------
                                                                                   

consensus_11282#0      ATGGAGCTAGAGCGTGAGAGAAATGAGAGGATAAAGCTTGAGGAAGAATACGAAGAGGTG 2427
consensus_11282#2      ------------------------------------------------------------
consensus_11282#1      ------------------------------------------------------------
                                                                                   

consensus_11282#0      AAAAACGAAGTCAGTGAGCTAACCTCAGAAACTGAAGAGACTACTATACAGAAGCTCCAA 2487
consensus_11282#2      ------------------------------------------------------------
consensus_11282#1      ------------------------------------------------------------
                                                                                   

consensus_11282#0      GATGAAATAAAAGAATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAA 2547
consensus_11282#2      ------------------------------------------------------------
consensus_11282#1      ------------------------------------------------------------
                                                                                   

consensus_11282#0      GAGGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGGAACCTT 2607
consensus_11282#2      ------------------------------------------------------------
consensus_11282#1      ------------------------------------------------------------
                                                                                   

consensus_11282#0      GAGATCCGCCACCGCAAATGCCCAGGTTGTGGCACCCCCTTTGGACAGAGTGACGTTCGG 2667
consensus_11282#2      ------------------------------------------------------------
consensus_11282#1      ------------------------------------------------------------
                                                                                   

consensus_11282#0      GAGGTGAAGATCTGAAGCGTCAGCAAAACAGCTTGAATGACTGACTTGGTAGCGAGCATG 2727
consensus_11282#2      ------------------------------------------------------------
consensus_11282#1      ------------------------------------------------------------
                                                                                   

consensus_11282#0      TAAATATATAGTAGTAGTGCTAGTTTCTGTTTTCTTGGAGGACAGATATTAGATCGAATT 2787
consensus_11282#2      ------------------------------------------------------------
consensus_11282#1      ------------------------------------------------------------
                                                                                   

consensus_11282#0      GTCTTGGTGTGCCTCTGCCAAGACTGCCATGTAGAAACTATTATTATTATCACCTAAAAA 2847
consensus_11282#2      ------------------------------------------------------------
consensus_11282#1      ------------------------------------------------------------
                                                                                   

consensus_11282#0      TAGTGCAATTGCGGGGATCAAAAAAAAAGA 2877
consensus_11282#2      ------------------------------
consensus_11282#1      ------------------------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)