These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11291#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 790 fasta sequence [TAGACATTTTTTTTTTCCTCATGCTCATTACTTCTTCAAAGTTCTCAAAATTGCTATA-TAGGATGGGCCTAAGGCCGAGTTTAGTTAC-AAATTTTTTCTTCAAACTTCCAACTTTTTCATCACATTAAAACTTTCCTACATACACAAACTTCCAACTTTTCCGTCA-CATTGTT--CTAATTTCAACCAAAC-TTTCAATTT-TA-GTGTGAAC-TAAACACACCC-TAATTCA-TGCCCAA-TTGTTATGAAAATTCTAC-AA-GTTTTAC-AGAGATGGGAAAGTAGTAGGA-CCA-TGG-ATTTTTT-TTGTCAAC-AACTCCTTCACTTT-TGTGCTGGAGACGGTC-ATC-A-TGG-CACAAG-TGGACTCCACAC-GGTTTCTATGAG-AA-AAGGAAAACCTTTACA-AGATGAATCATATACACATGGA-CAATAATCTGACCCAGAATGACATAAAATTTGATGGGTCACTGATCATTTGATCAATCAGGTGTTCTTCTCAAGAACAGAGAGAGCTGGTGCCAGGTAATTGTTCGCCTTGTCAGGCAAATGAGCCACAAGTTCATACAACTCATCCCCTT--GCTTTGAGACATGTTCATAGCACACATCAAAGCTTTTGTTTCTTGCTGTTGAATCGTGCAATGCCTTGACACAGATATCTGCTACGTCGGCACAGCTGATACCCTGAGAGATTCTGTTCCCTTGATCAAAGATCAGAGCACGCTGACCGCCAGGTTCTTCCTGCAGAGGACCTGGGCATACAATTGTATATCCGAGGCCGGATCTCCTCAGTGCATCCTCTCCAGCCTTC] [+] EMBL CB621047 [TAGACAAATGCACTTTCCTCATGCTCATTACTTCTTCAAAGTTCTCAAAATTGCTATA TAGGATGGGCCTAAGGCCGAGTTTAGTTAC AAATTTTTTCTTCAAACTTCCAACTTTTTCATCACATTAAAACTTTCCTACATACACAAACTTCCAACTTTTCCGTCA CATTGTT CTAATTTCAACCAAAC TTTCAATTT TA GTGTGAAC TAAACACACCC TAATTCA TGCCCAA TTGTTATGAAAATTCTAC AA GTTTTAC AGAGATGGGAAAGTAGTAGGA CCA TGG ATTTTTT TTGTCAAC AACTCCTTCACTTT TGTGCTGGAGACGGTC ATC A TGG CACAAG TGGACTCCACAC GGTTTCTATGAG AA AAGGAAAACCTTTACA AGATGAATCATATACACATGGA CAATAATCTGACCCAGAATGACATAAAATTTGATGGGTCACTGATCATTTGATCAATCAGGTGTTCTTCTCAAGAACAGAGAGAGCTGGTGCCAGGTAATTGTTCGCCTTGTCAGGCAAATGAGCCACAAGTTCATACAACTCATCCCCTT GCTTTGAGACATGTTCATAGCACACATCAAAGCTTTTGTTTCTTGCTGTTGAATCGTGCAATGCCTTGACACAGATATCTGCTACGTCGGCACAGCTGATACCCTGAGAGATTCTGTTCCCTTGATCAAAGATCAGAGCACGCTGACCGCCAGGTTCTTCCTGCAGAGGACCT ] [-] EMBL BI808102 [ TTTTTTTTTTCCTCATGCTCATTACTTCTTCAAAGTTCTCAAAATGGCTATA TAGGATGGGCCTAAGGCCGAGTTTAGTTAC AAATTTTTTCTTCAAACTTCCAACTTTTTCATCACATTAAAACTTTCCTACATACACAAACTTCCAACTTTTCCGTCA CATTGTT CTAATTTCAACCAAAC TTTCAATTT TA GTGTGAAC TAAACACACCC TAATTCA TGCCCAACTGGTTATGAAAATTCTAC AAGGTTTTAC AGAGATGGGAAAGTAGTAGGACCCA TGG ATTTTTT TGGTCAAC AACTCCTTCAC TT TGTGCTGGAGACGGTC ATCTA TGG CACAAGTTGGACTCCACAC GGTTTCTATGAG AA AAGGAGAACCTTTACA AGATGAATCATATACACATGGAGCAATAATCTGACCCAGAATGAC TAAAA TTGATGGGTCCCTGATCATTTGATC ATCAGG GTTCTTCTCAAGAACAG ] [-] EMBL BM420330 [ TTTTTTTTTTCCTCA GGTCATTACTTCTTCAAAGTTCTCAAAA TGGTATA TAGGATGGGCCTAAGGCCGAGTTTAGTTACAAAATTTTTTCTTCAAACTTCCAACTTTTTCATCACATTAAAACTTTCCTACATACACAAACTTCCAACTTTTCCGTCAGCATGGGTNGCTAATTTCAACCAAACGTTTCAATTTATAGGTGTGAAC TAAACACACCC TAATTCAGTGCCCAA TGGTTATGAAAATTCTAC AA GTTTTAC AGAGATGGGAAAGTAGTAGGA CCAGTGG ATTTTTTCTGGTCAAC AACTCCTTCACTTTGGGTGCTGGAGACGGTC ATC AGTGGCCACAAG TGGACTCCACACGGGTTTCTATGAGCAACAAGGAAAACCTTTACA AGAgtg ] [-] EMBL BQ907228 [ CAAAGTTCTCAAAA TGCTATAGTAGGATGGGCCTAAGGCCGAGTTTAGTTAC AAATTTTTTCTTCAAACTTCCAACTTTTTCATCACATTAAAACTTTCCTACATACACAAACTTCCAACTTTTCCGTCA CA TGTN CTAATTTCAACCAAAC TTTCAATTT TA GTGTGAACGTAAACACACCCATAATTCA TGCCCAA NTGTTATGAAAATTCTACTAA GTTTTACTAGAGATGGGAAAGTAGTAGGA CCA TGGCATTGGNT TTGTCAACGAACTCCTTCAC TT TGTGCTGGAGACGGTCAATCGA TGG CACAAG TGGACTCCACAC GGTTTCTATGAG AA AAGGAAAACCTTTACANAGATGAATCATATACACATGGA CAATANTCTGAC ] [+] EMBL CB619068 [ TCTCAAAATTGCTATA TAGGATGGGCCTAAGGCCGAGTTTAGTTAC AAATTTTTTCTTCAAACTTCCAACTTTTTCATCACATTAAAACTTTCCTACATACACAAACTTCCAACTTTTCCGTCA CATTGTT CTAATTTCAACCAAAC TTTCAATTT TA GTGTGAAC TAAACACACCC TAATTCA TGCCCAA TTGTTATGAAAATTCTAC AA GTTTTAC AGAGATGGGAAAGTAGTAGGA CCA TGG ATTTTTT TTGTCAAC AACTCCTTCACTTT TGTGCTGGAGACGGTC ATC A TGG CACAAG TGGACTCCACAC GGTTTCTATGAG AA AAGGAAAACCTTTACA AGATGAATCATATACACATGGA CAATAATCTGACCCAGAATGACATAAAATTTGATGGGTCACTGATCATTTGATCAATCAGGTGTTCTTCTCAAGAACAGAGAGAGCTGGTGCCAGGTAATTGTTCGCCTTGTCAGGCAAATGAGCCACAAGTTCATACAACTCATCCCCTT GCTTTGAGACATGTTCATAGCACACATCAAAGCTTTTGTTTCTTGCTGTTGAATCGTGCAATGCCTTGACACAGATATCTGCTACGTCGGCACAGCTGATACCCTGAGAGATTCTGTTCCCTTGATCAAAGATCAGAGCACGCTGACCGCCAGGTTCTTCCTGCAGAGGACCTGGGCATACAATTGTATATCCGAGGCCGGATCTCCTCAGTGCATCCTCTCCAGCCTTC] [-] EMBL BI811364 [ TTTTTTCTTCAAACTTCCAACTTTTTCATCACATTAAAACTTTCCTACATACACAAACTTCCAACTTTTCCGTCA CATTGTT CTAATTTCAACCAAAC TTTCAATTT TA GTGTGAAC TAAACACACCC TAATTCA TGCCCAA TGTTATGAAAATTCTAC AA GTTTTAC AGAGATGGGAAAGTAGTAGGA CCA TGG ATTTTTT TTGTCAAC AACTCCTTCAC TT TGTGCTGGAGACGGTC ATC A TGG CACAAG TGGACTCCACAC GGTTTCTATGAG AA AAGGAAAACCTTTACA AGATGAATCATATACACATGGA CAATAATCTGACCCAGAATGACATAAAATTTGATGGGTCACTGATCATTTGATCAATCAGGTGTTCTTCTCAAGAACAGAGAGAGCTGGTGCCAGGTAATTGTTCGCCTTGTCAGGCAAATGAGCCACAAGTTCATACAA TCATCCCCTTTGGGTTTGgagga ] consensusID : consensus_11291#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence [TTTTTTTTTTTTTTTTCTTCAAACTTCCAACTTTTTCATCACATTAAAACTTTCCTACATACACAAACTTCCAACTTTTCCGTCACATTGTTCTAATTTCAACCAAACTTTCAATTTTAGGGGGAACTAAACACACCCTAATTCATGCCCAATTGTTATGAAAATTCTACAAGTTTTACAGAGATGGGAAAGTAGTAGGACCATGGATTTTTTTTGTCAACAACTCCTTCACTTTTGTGCTGGAAACGGTCATCATGGCACAAGTGGACTCCACACGGTTTCTATGAGAAAAGGAAAACCTTTACAAGATGAATCATATACACATGGACAATAATCTGACCCAAAATGACATAAAATTTGATGGGTCACTGATCATTTGATCAATCAGGTGTTCTTCTCAAAAACAGAGAGAGCTGGTGCCAGGTAATTGTTCGCCTTGTCAGGCAAATGAGCCACAAGTTCATACAACTCATCCCCTTGCTTTGAGACATGTTCATAGCACACATCAAAGCTTTTGTTTCTTGCTGTTGAATCGTGCAATGCCTTGACACAAATATCTGCTACGTCGGCACAGCTAATACCCTGAGAGATTCTGTTCCCTTGATCAAAGATCAGAGCACGCTGACCGCCAGGTTCTTCCTGCAGAGGACCTGGGCATACAATTGTATATCCCCCCTTGGCTCGCCCTCTGG] [+] EMBL CA762038 [TTTTTTTTTTTTTTTTCTTCAAACTTCCAACTTTTTCATCACATTAAAACTTTCCTACATACACAAACTTCCAACTTTTCCGTCACATTGTTCTAATTTCAACCAAACTTTCAATTTTAGGGGGAACTAAACACACCCTAATTCATGCCCAATTGTTATGAAAATTCTACAAGTTTTACAGAGATGGGAAAGTAGTAGGACCATGGATTTTTTTTGTCAACAACTCCTTCACTTTTGTGCTGGAAACGGTCATCATGGCACAAGTGGACTCCACACGGTTTCTATGAGAAAAGGAAAACCTTTACAAGATGAATCATATACACATGGACAATAATCTGACCCAAAATGACATAAAATTTGATGGGTCACTGATCATTTGATCAATCAGGTGTTCTTCTCAAAAACAGAGAGAGCTGGTGCCAGGTAATTGTTCGCCTTGTCAGGCAAATGAGCCACAAGTTCATACAACTCATCCCCTTGCTTTGAGACATGTTCATAGCACACATCAAAGCTTTTGTTTCTTGCTGTTGAATCGTGCAATGCCTTGACACAAATATCTGCTACGTCGGCACAGCTAATACCCTGAGAGATTCTGTTCCCTTGATCAAAGATCAGAGCACGCTGACCGCCAGGTTCTTCCTGCAGAGGACCTGGGCATACAATTGTATATCCCCCCTTGGCTCGCCCTCTGG] consensusID : consensus_11291#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence [TTTTTTTTTTTTCTTCAAAGTTCTCAAAATTGCTATATAGGATGGGCCTAAGGCCGAGTTTAGTTACAAATTTNTTCTTCAAACTTCCAACTTTTTCATCACATTAAAACTTTCCTACATACACAAACTTCCAACTTTTCCGTCACATTGTTCTAATTTCAACCAAACTTTCAATTTTAGTGTGAACTAAACACACCCTAATTCATGCCCAATTGTTATGAAAATTCTACAAGTTTTACAGAGATGGGAAAGTAGTAGGACCATGGATTTTTTTTGTCAACAACTCCTTCACTTTTGTGCTGGAGACGGTCATCATGGCACAAGTGGACTCCACACGGTTTCTATGAGAAAAGGAAAACCTTTACAAGATGAATCATATACACATGGACAATAATCTGACCCAGAATGACATAAAATTTGATGGGTCACTGATCATTTGATCAATCAGGTGTTCTTCTCAAGAACAGAGAGAGCTGGTGCCAGGTAATTGTTCGCCTTGTCAGGCAAATGAGCCACAAGTTCATACAACTCATCCCCTTGCTTTGAGACATGTTCATAGCACACATCAAAGCTTTTGTTTCTTGCTGTTGAATCGTGCAATGCCTTGACACAGATATCTGCTACGTCGGCACAGCTGATACCCTGAGAGATTCTGTTCCCTTGATCAAAGATCAGGAGCACGCTGACCGCCA] [-] EMBL AU032797 [TTTTTTTTTTTTCTTCAAAGTTCTCAAAATTGCTATATAGGATGGGCCTAAGGCCGAGTTTAGTTACAAATTTNTTCTTCAAACTTCCAACTTTTTCATCACATTAAAACTTTCCTACATACACAAACTTCCAACTTTTCCGTCACATTGTTCTAATTTCAACCAAACTTTCAATTTTAGTGTGAACTAAACACACCCTAATTCATGCCCAATTGTTATGAAAATTCTACAAGTTTTACAGAGATGGGAAAGTAGTAGGACCATGGATTTTTTTTGTCAACAACTCCTTCACTTTTGTGCTGGAGACGGTCATCATGGCACAAGTGGACTCCACACGGTTTCTATGAGAAAAGGAAAACCTTTACAAGATGAATCATATACACATGGACAATAATCTGACCCAGAATGACATAAAATTTGATGGGTCACTGATCATTTGATCAATCAGGTGTTCTTCTCAAGAACAGAGAGAGCTGGTGCCAGGTAATTGTTCGCCTTGTCAGGCAAATGAGCCACAAGTTCATACAACTCATCCCCTTGCTTTGAGACATGTTCATAGCACACATCAAAGCTTTTGTTTCTTGCTGTTGAATCGTGCAATGCCTTGACACAGATATCTGCTACGTCGGCACAGCTGATACCCTGAGAGATTCTGTTCCCTTGATCAAAGATCAGGAGCACGCTGACCGCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11291#0 TAGACATTTTTTTTTTCCTCATGCTCATTACTTCTTCAAAGTTCTCAAAATTGCTATATA 60 consensus_11291#2 ---------------------TTTTTTTTTTTTCTTCAAAGTTCTCAAAATTGCTATATA 39 consensus_11291#1 ------------------------------------------------------------ consensus_11291#0 GGATGGGCCTAAGGCCGAGTTTAGTTACAAATTTTTTCTTCAAACTTCCAACTTTTTCAT 120 consensus_11291#2 GGATGGGCCTAAGGCCGAGTTTAGTTACAAATTTNTTCTTCAAACTTCCAACTTTTTCAT 99 consensus_11291#1 ---------------------TTTTTTTTTTTTTTTTCTTCAAACTTCCAACTTTTTCAT 39 * ** *** ************************* consensus_11291#0 CACATTAAAACTTTCCTACATACACAAACTTCCAACTTTTCCGTCACATTGTTCTAATTT 180 consensus_11291#2 CACATTAAAACTTTCCTACATACACAAACTTCCAACTTTTCCGTCACATTGTTCTAATTT 159 consensus_11291#1 CACATTAAAACTTTCCTACATACACAAACTTCCAACTTTTCCGTCACATTGTTCTAATTT 99 ************************************************************ consensus_11291#0 CAACCAAACTTTCAATTTTAGTGTGAACTAAACACACCCTAATTCATGCCCAATTGTTAT 240 consensus_11291#2 CAACCAAACTTTCAATTTTAGTGTGAACTAAACACACCCTAATTCATGCCCAATTGTTAT 219 consensus_11291#1 CAACCAAACTTTCAATTTTAGGGGGAACTAAACACACCCTAATTCATGCCCAATTGTTAT 159 ********************* * ************************************ consensus_11291#0 GAAAATTCTACAAGTTTTACAGAGATGGGAAAGTAGTAGGACCATGGATTTTTTTTGTCA 300 consensus_11291#2 GAAAATTCTACAAGTTTTACAGAGATGGGAAAGTAGTAGGACCATGGATTTTTTTTGTCA 279 consensus_11291#1 GAAAATTCTACAAGTTTTACAGAGATGGGAAAGTAGTAGGACCATGGATTTTTTTTGTCA 219 ************************************************************ consensus_11291#0 ACAACTCCTTCACTTTTGTGCTGGAGACGGTCATCATGGCACAAGTGGACTCCACACGGT 360 consensus_11291#2 ACAACTCCTTCACTTTTGTGCTGGAGACGGTCATCATGGCACAAGTGGACTCCACACGGT 339 consensus_11291#1 ACAACTCCTTCACTTTTGTGCTGGAAACGGTCATCATGGCACAAGTGGACTCCACACGGT 279 ************************* ********************************** consensus_11291#0 TTCTATGAGAAAAGGAAAACCTTTACAAGATGAATCATATACACATGGACAATAATCTGA 420 consensus_11291#2 TTCTATGAGAAAAGGAAAACCTTTACAAGATGAATCATATACACATGGACAATAATCTGA 399 consensus_11291#1 TTCTATGAGAAAAGGAAAACCTTTACAAGATGAATCATATACACATGGACAATAATCTGA 339 ************************************************************ consensus_11291#0 CCCAGAATGACATAAAATTTGATGGGTCACTGATCATTTGATCAATCAGGTGTTCTTCTC 480 consensus_11291#2 CCCAGAATGACATAAAATTTGATGGGTCACTGATCATTTGATCAATCAGGTGTTCTTCTC 459 consensus_11291#1 CCCAAAATGACATAAAATTTGATGGGTCACTGATCATTTGATCAATCAGGTGTTCTTCTC 399 **** ******************************************************* consensus_11291#0 AAGAACAGAGAGAGCTGGTGCCAGGTAATTGTTCGCCTTGTCAGGCAAATGAGCCACAAG 540 consensus_11291#2 AAGAACAGAGAGAGCTGGTGCCAGGTAATTGTTCGCCTTGTCAGGCAAATGAGCCACAAG 519 consensus_11291#1 AAAAACAGAGAGAGCTGGTGCCAGGTAATTGTTCGCCTTGTCAGGCAAATGAGCCACAAG 459 ** ********************************************************* consensus_11291#0 TTCATACAACTCATCCCCTTGCTTTGAGACATGTTCATAGCACACATCAAAGCTTTTGTT 600 consensus_11291#2 TTCATACAACTCATCCCCTTGCTTTGAGACATGTTCATAGCACACATCAAAGCTTTTGTT 579 consensus_11291#1 TTCATACAACTCATCCCCTTGCTTTGAGACATGTTCATAGCACACATCAAAGCTTTTGTT 519 ************************************************************ consensus_11291#0 TCTTGCTGTTGAATCGTGCAATGCCTTGACACAGATATCTGCTACGTCGGCACAGCTGAT 660 consensus_11291#2 TCTTGCTGTTGAATCGTGCAATGCCTTGACACAGATATCTGCTACGTCGGCACAGCTGAT 639 consensus_11291#1 TCTTGCTGTTGAATCGTGCAATGCCTTGACACAAATATCTGCTACGTCGGCACAGCTAAT 579 ********************************* *********************** ** consensus_11291#0 ACCCTGAGAGATTCTGTTCCCTTGATCAAAGATCAG-AGCACGCTGACCGCCAGGTTCTT 719 consensus_11291#2 ACCCTGAGAGATTCTGTTCCCTTGATCAAAGATCAGGAGCACGCTGACCGCCA------- 692 consensus_11291#1 ACCCTGAGAGATTCTGTTCCCTTGATCAAAGATCAG-AGCACGCTGACCGCCAGGTTCTT 638 ************************************ **************** consensus_11291#0 CCTGCAGAGGACCTGGGCATACAATTGTATATCCGAGGCCGGATCTCCTCAGTGCATCCT 779 consensus_11291#2 ------------------------------------------------------------ consensus_11291#1 CCTGCAGAGGACCTGGGCATACAATTGTATATCCCCCCTTGGCTCGCCCTCTGG------ 692 consensus_11291#0 CTCCAGCCTTC 790 consensus_11291#2 ----------- consensus_11291#1 ----------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||