Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 11296 cluster # 11296       Sequences # 8       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11296#0 length = 1612 sequences # 8  
consensusID : consensus_11296#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1612
fasta sequence 
                              [TATCCTTCCCGAGCACGCACACTCGCCGCCGCACTCCACTTCCCCAACACGCCGCCGCCGCCGCCGCCGCCCGAGCTCGCCGCGATGTCATGGCTCGCGCGCTCAATCGCGGCTACCCTCTCTTCTTCCCACTCTGATGAAGATGGCGATAACCTCGAGGCGAGCAGCGGCGACGACCATAGGGACGAGCAGCCGGACACCCCGAGCGGCGGCGGCGGCGGAGTCAAGGGCGACTTGTCGGAGCTGACCGACTCCCTCACCCGCGGCCTCTGGGGCGTCGCTTCCTTCCTCGCTCCGCCGCCTGCGCCCGCCGCCGAAGCCGCGGAGACGGCTACGGGGGCGGTGGGGGAGGGGGAGGATGGGGCTCGGTCGCCGCGGATCGCCGGGATCCGGAGCGACCTGGCGGAGATCGGGGGCAGGGTGAGGAGCGGAATCTCGTTGCTCTCGAACGCCAACGCCGTGGCGGAGATCTCCAAGATCGCCTCGTCGCTCCTGCCGTTCGGGCCCGGAGAGGACGACGACGACGACGACGATGCCGAGGCTGTGGGCGTGACCGAGGAGGTGGTGGAGTTCGTGAGGCACATCTCGACCCATCCCGAGACGTGGCTCGACTTCCCCTTGTTTGTCAACGACCGGCACGCGGATGATTTTGAACTGTCAGACACACAATATGGACATGCATTGGCTATAGAGCGTGTTGTTCCAAGCTTGTCATATCTTAGGACCGAGCTTTGCTCTACCAATATGAGTGAAGCATGCTTTTGGAAGATCTATTTTGTGCTTCTTCACTCAAAACTCAGCAAGCAAGATGCTGAACTTCTTTCAACGCCACAGATCCTAAAAGCAAGAGAAGTATTATTGCAAAGTTCACCGACAAAGAAAAGGCTGGGACCTGATGATGGTTCATCACAAAACTGGAATGTTGCATCTACCAAAGGTGACAACAGTGGAATGTCTGAAGCACCTTCATTGGAAGAAGCAACTTCTGTACCGATGAATGTGGTTGAGGCTGACAAGCATCCGATTTCAGTCGCTGAGGTGGAAATAATAGACAAGTCCGTGGTTGAAGAAGAGCTGGTGGTGAAAAATGAGACCAAGAGTATACCTTCTGACTCTGAGAAGGCTAATCTGCATATCACCTCGGACGATGATGATAAAGAGGTGGAGGACTGGCTGAAGGATGTGGCTCCTGTGTCCAGCAAAACAGGCAACGTCAATTCAGCAGGGCAGGAGGAAGACATATCCTTCAGTGATCTGGAGGATGAAGAGGATGATTGAGAGACGGCTAGCTTAAGCAGCGCAGCCAGTACTAGTTCCCTCGGTTCAATGTCGCAAACACAAGACAAC-GGCTAGCTTCATGAAGAACATCAACTGTTACTGAATGATCGAAACTCTGCAGCTACAGCAAAGGGAACCGTGTTGTTGCTGAGTGACGGATTCATCCTAATTGCATGTTGATGTAATGATGTATTTATGTTCGCTCTCTTTTTGTACATAGATATATACACTATGTCACCTGCGTGTGCACTGTATATCCACGATAGCGTGCAGCACTCATACTTACTGGATTCTGAATGCAAGATATCCTCTCATTTGCTGTCAAAAAAAAAAA]

[+] EMBL AK103570             [TATCCTTCCCGAGCACGCACACTCGCCGCCGCACTCCACTTCCCCAACACGCCGCCGCCGCCGCCGCCGCCCGAGCTCGCCGCGATGTCATGGCTCGCGCGCTCAATCGCGGCTACCCTCTCTTCTTCCCACTCTGATGAAGATGGCGATAACCTCGAGGCGAGCAGCGGCGACGACCATAGGGACGAGCAGCCGGACACCCCGAGCGGCGGCGGCGGCGGAGTCAAGGGCGACTTGTCGGAGCTGACCGACTCCCTCACCCGCGGCCTCTGGGGCGTCGCTTCCTTCCTCGCTCCGCCGCCTGCGCCCGCCGCCGAAGCCGCGGAGACGGCTACGGGGGCGGTGGGGGAGGGGGAGGATGGGGCTCGGTCGCCGCGGATCGCCGGGATCCGGAGCGACCTGGCGGAGATCGGGGGCAGGGTGAGGAGCGGAATCTCGTTGCTCTCGAACGCCAACGCCGTGGCGGAGATCTCCAAGATCGCCTCGTCGCTCCTGCCGTTCGGGCCCGGAGAGGACGACGACGACGACGACGATGCCGAGGCTGTGGGCGTGACCGAGGAGGTGGTGGAGTTCGTGAGGCACATCTCGACCCATCCCGAGACGTGGCTCGACTTCCCCTTGTTTGTCAACGACCGGCACGCGGATGATTTTGAACTGTCAGACACACAATATGGACATGCATTGGCTATAGAGCGTGTTGTTCCAAGCTTGTCATATCTTAGGACCGAGCTTTGCTCTACCAATATGAGTGAAGCATGCTTTTGGAAGATCTATTTTGTGCTTCTTCACTCAAAACTCAGCAAGCAAGATGCTGAACTTCTTTCAACGCCACAGATCCTAAAAGCAAGAGAAGTATTATTGCAAAGTTCACCGACAAAGAAAAGGCTGGGACCTGATGATGGTTCATCACAAAACTGGAATGTTGCATCTACCAAAGGTGACAACAGTGGAATGTCTGAAGCACCTTCATTGGAAGAAGCAACTTCTGTACCGATGAATGTGGTTGAGGCTGACAAGCATCCGATTTCAGTCGCTGAGGTGGAAATAATAGACAAGTCCGTGGTTGAAGAAGAGCTGGTGGTGAAAAATGAGACCAAGAGTATACCTTCTGACTCTGAGAAGGCTAATCTGCATATCACCTCGGACGATGATGATAAAGAGGTGGAGGACTGGCTGAAGGATGTGGCTCCTGTGTCCAGCAAAACAGGCAACGTCAATTCAGCAGGGCAGGAGGAAGACATATCCTTCAGTGATCTGGAGGATGAAGAGGATGATTGAGAGACGGCTAGCTTAAGCAGCGCAGCCAGTACTAGTTCCCTCGGTTCAATGTCGCAAACACAAGACAAC GGCTAGCTTCATGAAGAACATCAACTGTTACTGAATGATCGAAACTCTGCAGCTACAGCAAAGGGAACCGTGTTGTTGCTGAGTGACGGATTCATCCTAATTGCATGTTGATGTAATGATGTATTTATGTTCGCTCTCTTTTTGTACATAGATATATACACTATGTCACCTGCGTGTGCACTGTATATCCACGATAGCGTGCAGCACTCATACTTACTGGATTCTGAATGCAAGATATCCTCTCATTTGCTGTCA          ]
[+] EMBL AK061986             [                    ACTCGCCGCCGCACTCCACTTCCCCAACACGCCGCCGCCGCCGCCGCCGCCCGAGCTCGCCGCGATGTCATGGCTCGCGCGCTCAATCGCGGCTACCCTCTCTTCTTCCCACTCTGATGAAGATGGCGATAACCTCGAGGCGAGCAGCGGCGACGACCATAGGGACGAGCAGCCGGACACCCCGAGCGGCGGCGGCGGCGGAGTCAAGGGCGACTTGTCGGAGCTGACCGACTCCCTCACCCGCGGCCTCTGGGGCGTCGCTTCCTTCCTCGCTCCGCCGCCTGCGCCCGCCGCCGAAGCCGCGGAGACGGCTACGGGGGCGGTGGGGGAGGGGGAGGATGGGGCTCGGTCGCCGCGGATCGCCGGGATCCGGAGCGACCTGGCGGAGATCGGGGGCAGGGTGAGGAGCGGAATCTCGTTGCTCTCGAACGCCAACGCCGTGGCGGAGATCTCCAAGATCGCCTCGTCGCTCCTGCCGTTCGGGCCCGGAGAGGACGACGACGACGACGACGATGCCGAGGCTGTGGGCGTGACCGAGGAGGTGGTGGAGTTCGTGAGGCACATCTCGACCCATCCCGAGACGTGGCTCGACTTCCCCTTGTTTGTCAACGACCGGCACGCGGATGATTTTGAACTGTCAGACACACAATATGGACATGCATTGGCTATAGAGCGTGTTGTTCCAAGCTTGTCATATCTTAGGACCGAGCTTTGCTCTACCAATATGAGTGAAGCATGCTTTTGGAAGATCTATTTTGTGCTTCTTCACTCAAAACTCAGCAAGCAAGATGCTGAACTTCTTTCAACGCCACAGATCCTAAAAGCAAGAGAAGTATTATTGCAAAGTTCACCGACAAAGAAAAGGCTGGGACCTGATGATGGTTCATCACAAAACTGGAATGTTGCATCTACCAAAGGTGACAACAGTGGAATGTCTGAAGCACCTTCATTGGAAGAAGCAACTTCTGTACCGATGAATGTGGTTGAGGCTGACAAGCATCCGATTTCAGTCGCTGAGGTGGAAATAATAGACAAGTCCGTGGTTGAAGAAGAGCTGGTGGTGAAAAATGAGACCAAGAGTATACCTTCTGACTCTGAGAAGGCTAATCTGCATATCACCTCGGACGATGATGATAAAGAGGTGGAGGACTGGCTGAAGGATGTGGCTCCTGTGTCCAGCAAAACAGGCAACGTCAATTCAGCAGGGCAGGAGGAAGACATATCCTTCAGTGATCTGGAGGATGAAGAGGATGATTGAGAGACGGCTAGCTTAAGCAGCGCAGCCAGTACTAGTTCCCTCGGTTCAATGTCGCAAACACAAGACAAC GGCTAGCTTCATGAAGAACATCAACTGTTACTGAATGATCGAAACTCTGCAGCTACAGCAAAGGGAACCGTGTTGTTGCTGAGTGACGGATTCATCCTAATTGCATGTTGATGTAATGATGTATTTATGTTCGCTCTCTTTTTGTACATAGATATATACACTATGTCACCTGCGTGTGCACTGTATATCCACGATAGCGTGCAGCACTCATACTTACTGGATTCTGAATGCAAGATATCCTCTC                     ]
[+] EMBL BP185009             [                                                                                                                                                                                                                                                                                                                                                                                                                                    acGAGG GCGGAATCTCGTTGCTCTCGAACGCCAACGCCGTGGCGGAGATCTCCAAGATCGCCTCGTCGCTCCTGCCGTTCGGGCCCGGAGAGGACGACGACGACGACGACGATGCCGAGGCTGTGGGCGTGACCGAGGAGGTGGTGGAGTTCGTGAGGCACATCTCGACCCATCCCGAGACGTGGCTCGACTTCCCCTTGTTTGTCAACGACCGGCACGCGGATGATTTTGAACTGTCAGACACACAATATGGACATGCATTGGCTATAGAGCGTGTTGTTCCAAGCTTGTCATATCTTAGGACCGAGCTTTGCTCTACCAATATGAGTGAAGCATGCTTTTGGAAGATCTATTTTGTGCTTCTTCACTCAAAACTCAGCAAGCAAGATGCTGAACTTCTTTCAACGCCACAGATCCTAAAAGCAAGAGAAGTATTATTGCAAAGTTCACCGACAAAGAAAAGGCTGGGACCTGATGATGGTTCATCACAAAACTGGAATGTTGCATCTACCAAAGGTGACAACAGTGGAATGTCTGAAGCACCTTCATTGGAAGAAGCAACTTCTGTACCGATGAATGTGGTTGAGGCTGACAAGCATCCGATTTCAGTCGCTGAGGTGGAAATAATAGACAAGTCCGTGGTTGAAGAAGAGCTGGTGGTGAAAAATGAGACCAAGAGTATACCTTCTGACTCTGAGAAGGCTAATCTGCATATCACCTCGGACGATGATGATAAAGAGGTGGAGGACTGGCTGAAGGATGTGGCTCCTGTGTCCAGCAAAACAGGCAACGTCAATTCAGCAGGGCAGGAGGAAGACATATCCTTCAGTGATCTGGAGGATGAAGAGGATGATTGAGAGACGGCTAGCTTAAGCAGCGCAGCCAGTACTAGTTCCCTCGGTTCAATGTCGCAAACACAAGACAAC GGCTAGCTTCATGAAGAACATCAACTGTTACTGAATGATCGAAACTCTGCAGCTACAGCAAAGGGAACCGTGTTGTTGCTGAGTGACGGATTCATCCTAATTGCATGTTGATGTAATGATGTATTTATGTTCGCTCTCTTTTTGTACATAGATATATACACTATGTCACCTGCGTGTGCACTGTATATCCACGATAGCGTGCAGCACTCATACTTACTGGATTCTGAATGCAAGATATCCTCTCATTTGCTGTCAAAAAAAA   ]
[-] EMBL CA760200             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CATCTACCAAAGGTGACAACAGTGGAATGTCTGAAGCACCTTCATTGGAAGAAGCAACTTCTGTACCGATGAATGTGGTTGAGGCTGACAAGCATCCGATTTCAGTCGCTGAGGTGGAAATAATAGACAAGTCCGTGGTTGAAGAAGAGCTGGTGGTGAAAAATGAGACCAAGAGTATACCTTCTGACTCTGAGAAGGCTAATCTGCATATCACCTCGGACGATGATGATAAAGAGGTGGAGGACTGGCTGAAGGATGTGGCTCCTGTGTCCAGCAAAACAGGCAACGTCAATTCAGCAGGGCAGGAGGAAGACATATCCTTCAGTGATCTGGAGGATGAAGAGGATGATTGAGAGACGGCTAGCTTAAGCAAAGCAGCCAGTACTAGTTCCCTCGGTTCAATGTCGCAAACACAAGACAAC GGCTAGCTTCATGAAGAACATCAACTGTTACTGAATGATCGAAACTCTGCAGCTACAGCAAAGGGAACCGTGTTGTTGCTGAGTGACGGATTCATCCTAATTGCATGTTGATGTAATGATGTATTTATGTTCGCTCTCTTTTTGTACATAGATATATACACTATGTCACCTGCGTGTGCACTGTATATCCACGATAGCGTGCAGCACTCATACTTACTGGATTCTGAATGTAAGATATCCTCTCATTTGCTGTCAAAAAA     ]
[+] EMBL AU063746             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CGCTGAGGTGGAAATAATAGACAAGTCCGTGGTTGAAGAAGAGCTGGTGGTGAAAAATGAGACCAAGAGTATACCTTCTNACTCTAAGAAGGCTAATCTGCATATCACCTCGGACGATGATGATAAAGAGGTGGAGGACTGGCTGAAGGATGTGGCTCCTGTGTCCAGCAAAACAGGCAACGTCAATTCAGCAGGGCAGGAGGAAGACATATCCTTCAGTGATCTGGAGGATGAAGAGGATGATTGANAGACGGCTAGCTTAAGCAGCGCANCAAGTACTAGTTCCCTCGGTTCAATGTCGCAAACACAAGACAACGGGCTAGCTTCATGAAGACCATCAACTGTTACTGAATGATCGAAACTCTGCAGCTACAGCAAAGGG ACCGTGTTNTTGCTGAGTNACGGATTCATCCTAATTGCATGTTTATGTAATGATGTATTTA                                                                                                                                          ]
[+] EMBL AU063729             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CGCTGAGGTGGAAATAATAGACAAGTCCGTGGTTGAAGAAGAGCTGGTGGTGAAAAATGAGACCAAGAGTATACCTTCTGACTCTGAGAAGGCTAATCTGCATATCACCTCGGACGATGATGATAAAGAGGTGGAGGACTGGCTGAAGGATGTGGCTCCTGTGTCCAGCAAAACAGGCAACGTCAATTCAGCAGGGCAGGAGGANGACATATCCTTCAGTGATCTGGAGGATGAAGAGGTTGATTGAGAGACGG TAGCTTAAGCAGCG AG CAGTACTAG TNCCTCGG                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AU182189             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GTGGCTCCTGTGTCCAGCAAAACAGGCAACGTCAATTCAGCAGGGCAGGAGGAAGACATATCCTTCAGTGATCTGGAGGATGAAGAGGATGATTGAGAGACGGCTAGCTTAAGCAGCGCAGCCAGTACTAGTTCCCTCGGTTCAATGTCGCAAACACAAGACAAC GGCTAGCTTCATGAAGAACATCAACTGTTACTGAATGATCGAAACTCTGCAGCTACAGCAAAGGGAACCGTGTTGTTGCTGAGTGACGGATTCATCCTAATTGCATGTTGATGTAATGATGTATTTATGTTCGCTCTCTTTTTGTACATAGATATATACACTATGTCACCTGCGTGTGCACTGTATATCCACGATAGCGTGCAGCACTCATACTTACTGGATTNTGAATGCAAGATATCCTCTCATTTGCTGTCAAAAAAAAAAA]
[+] EMBL AU165308             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CAAAACAGGCAACGTCAATTCAGCAGGGCAGGAGGAAGACATANCCTTCAGTGATCTGGAGGATGAAGAGGATGATTGAGAGACGGCTAGCTTAAGCAGCGCAGCCAGTACTAGTTCCCTCGGTTCAATGTCGCAAACACAAGACAAC GGCTAGCTTCATGAAGAACATCAACTGTTACTGAATGATCGAAACTCTGCAGCTACAGCAAAGGGAACCGTGTTGTTGCTGAGTGACGGATTCATCCTAATTGCATGTTGATGTAATGATGTATTTATGTTCGCTCTCTTTTTGTACATAGATATATACACTATGTCACCTGCGTGTGCACTGTATATCCACGATAGCGTGCAGCNCTCATACTTACTGGATTCTGAATGCAAGATATCCTCTCATTTGCTGTCAAAAAAAAAAA]




>consensus_11296#0
TATCCTTCCCGAGCACGCACACTCGCCGCCGCACTCCACTTCCCCAACACGCCGCCGCCG
CCGCCGCCGCCCGAGCTCGCCGCGATGTCATGGCTCGCGCGCTCAATCGCGGCTACCCTC
TCTTCTTCCCACTCTGATGAAGATGGCGATAACCTCGAGGCGAGCAGCGGCGACGACCAT
AGGGACGAGCAGCCGGACACCCCGAGCGGCGGCGGCGGCGGAGTCAAGGGCGACTTGTCG
GAGCTGACCGACTCCCTCACCCGCGGCCTCTGGGGCGTCGCTTCCTTCCTCGCTCCGCCG
CCTGCGCCCGCCGCCGAAGCCGCGGAGACGGCTACGGGGGCGGTGGGGGAGGGGGAGGAT
GGGGCTCGGTCGCCGCGGATCGCCGGGATCCGGAGCGACCTGGCGGAGATCGGGGGCAGG
GTGAGGAGCGGAATCTCGTTGCTCTCGAACGCCAACGCCGTGGCGGAGATCTCCAAGATC
GCCTCGTCGCTCCTGCCGTTCGGGCCCGGAGAGGACGACGACGACGACGACGATGCCGAG
GCTGTGGGCGTGACCGAGGAGGTGGTGGAGTTCGTGAGGCACATCTCGACCCATCCCGAG
ACGTGGCTCGACTTCCCCTTGTTTGTCAACGACCGGCACGCGGATGATTTTGAACTGTCA
GACACACAATATGGACATGCATTGGCTATAGAGCGTGTTGTTCCAAGCTTGTCATATCTT
AGGACCGAGCTTTGCTCTACCAATATGAGTGAAGCATGCTTTTGGAAGATCTATTTTGTG
CTTCTTCACTCAAAACTCAGCAAGCAAGATGCTGAACTTCTTTCAACGCCACAGATCCTA
AAAGCAAGAGAAGTATTATTGCAAAGTTCACCGACAAAGAAAAGGCTGGGACCTGATGAT
GGTTCATCACAAAACTGGAATGTTGCATCTACCAAAGGTGACAACAGTGGAATGTCTGAA
GCACCTTCATTGGAAGAAGCAACTTCTGTACCGATGAATGTGGTTGAGGCTGACAAGCAT
CCGATTTCAGTCGCTGAGGTGGAAATAATAGACAAGTCCGTGGTTGAAGAAGAGCTGGTG
GTGAAAAATGAGACCAAGAGTATACCTTCTGACTCTGAGAAGGCTAATCTGCATATCACC
TCGGACGATGATGATAAAGAGGTGGAGGACTGGCTGAAGGATGTGGCTCCTGTGTCCAGC
AAAACAGGCAACGTCAATTCAGCAGGGCAGGAGGAAGACATATCCTTCAGTGATCTGGAG
GATGAAGAGGATGATTGAGAGACGGCTAGCTTAAGCAGCGCAGCCAGTACTAGTTCCCTC
GGTTCAATGTCGCAAACACAAGACAACGGCTAGCTTCATGAAGAACATCAACTGTTACTG
AATGATCGAAACTCTGCAGCTACAGCAAAGGGAACCGTGTTGTTGCTGAGTGACGGATTC
ATCCTAATTGCATGTTGATGTAATGATGTATTTATGTTCGCTCTCTTTTTGTACATAGAT
ATATACACTATGTCACCTGCGTGTGCACTGTATATCCACGATAGCGTGCAGCACTCATAC
TTACTGGATTCTGAATGCAAGATATCCTCTCATTTGCTGTCAAAAAAAAAAA

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)