These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11299#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1021 fasta sequence [GCCGCCTCACGCCGCCGCCGCCGGTGCCCGATCCCGCACACGCGTATCCCTCCAGCTCGCCGCCCGCCAGCCCGGCATGGAGCGNGTNNGCNGGCCGGNGCGGAGGAGGAGCNGGCGAGGCGCGGGGTGCAGACGCGCCGCCGCCGCCGCCGGTGGC-GCAGGGGGCGGGGGCGGGGCGGTGAAGGGGAAGTCCTGCAA-GGCTACCTCTTCTACTCGTCGTCGCTCAGGTCGCGAGACCGCGGTCCCGTCTGCGCC-GGAATCACCCGCGCCATCCCCCAAGTCCCTGATCACATGGTTGGAGAAATTGAGATGGAAGCTATCCATGAAGGTCGCAACCTTTCCGACTTCAGATATGGATGTATCGGCTATTCCATGTATCTGGATGACAAGAAGAGTTCTGAAGGGAAAGGTGACAAGCACCCGCAACTGCCTATTTGTGTTGGAATCGAGCTATTGGCTGATAGAAAAACTTCGACTAATCAGGCTTCATCTCACCATAAAAAGGAAGCTCCCCAACCACGGCGATATAAGCCTGCACAGAGAGGAGATGATTTCTTAACCAAATTTCACATGAATGCTGGACTTGTGGCAAATGGTGTAGCAAGGAACTTAAATAAAGTTGGGGCCTACATTAAAGACACCATGGATGATATCATGTATCCTTACCG-CAAACGTCCAAAGTAAAACCTAGATCTGGTTCTTTTTTAATCCTGAAGAAGAGTAGACAAACGGGGGAGTGTCTAATCCACTACTTCCTGAAACACCTGGCTAGCACATAGATAGGCTCTGTAGGCAGTTATATGGAGGCCAAGTTGCACTCTATTCCGCTAGCTGTTTGGTGCCTTCACTTCATATCATGTTTCCCCCCTAGCCTTCTCCCGCTATTGCAATGAGTTCATTTTAC-TGGGTTCCATCCAGCAATGTATAGGAGGTATGATGTAACACACAATATCACCTGCTTGA-GGTCATACTTGCGACTTCTGAGAATAATATCATGTCACCATTGCGAGCCAAAAAAAAA] [+] EMBL AU102107 [GCCGCCTCACGCCGCCGCCGCCGGTGCCCGATCCCGCACACGCGTATCCCTCCAGCTCGCCGCCCGCCAGCCCGGCATGGAGCGNGTNNGCNGGCCGGNGCGGAGGAGGAGCNGGCGAGGCGCGGGGTGCAGACGCGCCGCCGCCGCCGCCGGTGGC GCAGGGGGCGGGGGCGGGGCGGTGAAGGGGAA TCCTGCAA GGCTACCTCTTCTACTCGTCGTCGCTCAGGT ] [+] EMBL CB661960 [ GCGCGGGGTGCAGACGCGCCGCCGCCGCCGCCGGTGGCGGAAAGGGGCGGGGGAGGGGCGGTGAAGGGGAAGTCCTGCAAGGGCTACCTCTTCTACTCGTCGTCGCTCACGTCGCGAGACCGCGGTCCCGTCTGCGCCAGGAATCACCCGCGCCATCCCCCAAGTCCCTGATCACATGGTTGGAGAAATTGAGATGGAAGCTATCCATGAAGGTCGCAACCTTTCCGACTTCAGATATGGATGTATCGGCTATTCCATGTATCTGGATGACAAGAAGAGTTCTGAAGGGAAAGGTGACAAGCACCCGCAACTGCCTATTTGTGTTGGAATCGAGCTATTGGCTGATAGAAAAACTTCGACTAATCAGGCTTCATCTCACCATAAAAAGGAAGCTCCCCAACCACGGCGATATAAGCCTGCACAGAGAGGAGATGATTTCTTAACCAAATTTCACATGAATGCTGGACTTGTGGCATATGGTGTAGCAAGGAACTTAAATAAAGTTGGGGCCTACATTAAAGACACCATGGATGATATCATGTATCCTTACCG CAAACGT ] [+] EMBL AU068531 [ AAGTCCTGCAA GGCTACCTCTTCTACTCGTCGTCGCTCAGGTCGCGAGACCGCGGTCCCGTCTGCGCC GGCATCACCCGCGCCATCCCCCAAGTCCCTGATCACATGGTTGGAGAAATTGAGATGGAAGCTATCCAGGAAGGTCGCAACCTTTCCGACTTCAGATATGGATGTATCGGCTATTCCATGTATCTGGATGACAAGAAGAGTTCTGAAGGGAAAGGTGACAAGCACCCGCAACTGCCTATTTGTGTTGGAATCGAGCTATTGGCTGATAGAAAAACTTCGACTAATCAGGCTTCATCTCACCATAAAAANGAAGCTCCCCAACCACGGCGATATAAGCCTGCACAGAGA ] [+] EMBL AU068530 [ ACAAGCACCCGCAACTGCCTATTTGTGTTGGAATCGAGCTATTGGCTGATAGAAAAACTTCGACTAATCAGGCTTCATCTCACCATAAAAAGGAAGCTCCCCAACCACGGCGATATAAGCCTGCACAGAGAGGAGATGATTTCTTAACCAAATTTCAGAGGAATGCTGGACTTGTGGCTAATGGTGTAGCAAGGAACTTAAATAAAGTTGGGGCCTACATTAAAGACACCATGGATGATATCATGTATCCTTACCG CAAACGTCCAAAGTAAAACCTAGATCTGGTTCTTTTTTAATCCTGAAGAAGAGTAGACAAACGGGGGAGTGTCTAATCCACTACTTCCTGAAACACCTGGCTAGCACATAGATAGGCTCTGTAGGCAGTTATATGGAGGCCAAGTTGCACTCTATTCCGCTAGCTGTTTGGTGCCTTCACTTCATATCATGTTTCCCCCCTAGCCTTCTCCCGCTATTGCAATGAGTTCATTTTAC TGGGTTCCATCCAGCAATGTATAGGAGGTATGATGTAACACACAATATCACCTGCTTGA GGTCATACTTGCGACTTCTGAGAATAATATCATGTCACCATTGCGAGCCAAAAAAAAA] [+] EMBL AU063617 [ AATGGTGTAGCAAGGAACTTAAATAAAGTTGGGGCCTACATTAAAGACACCATGGATGATATCATGTATCCTTACCG CAAACGTCCAAAGTAAAACCTAGATCTGGTTCTTTTTTAATCCTGAAGAAGAGTAGACAAACGGGGGAGTGTCTAATCCACTACTTCCTGAAACACCTGGCTAGCACATAGATAGGCTCTGTAGGCAGTTATATGGAGGCCAAGTTGCACTCTATTCCGCTAGCTGTTTGGTGCCTTCACTTCATATCATGTTTCCCCCCTAGCCTTCTCCCGCTATTGCAATGAGTTCATTTTACTTGGGTTCCATCCAGCAATGTATAGGAGGTATGATGTAACACACAATATCACCTGCTTGAGGGTCATACTTGCGACTTCTTAGGATAATATCATGTCACCATTGCGAGCCA ] [+] EMBL C96650 [ TGGGGCCTACATTAAAGACACCANGGATGATATCATGTATCCTTNCCGCCAAACGTCCAAAGTAAAACCTAGATCTGGTTCTTTTTTAATCCTGAAGAAGAGTAGACAAACGGGGGAGTGTCTAATCCACTA TTCCTGAAACACCTGGCTAGCACATAGATAGGCTCTGTAGGCAGTTATATGGAGGCCAAGTTGCACTCTATTCCGCTAGCTGTTTGGTGCCTTCACTTCATATCATGTTTCCCCCCTAGCCTTCTCCCGCTATTGCAATGAGTTCATTTTAC TGGGTTCCATCCAGCAATGTATAGGAGGTATGATGTAACACACAATATCACCTGCTTGA GGTCATACTTGCGACTTCTGAGAATAATATCATGTCACCATTGCGAGCCAAAAA ] consensusID : consensus_11299#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 223 fasta sequence [GAGGTGAAGCCCCCCGCTCCACTCCTCCCAACTCCGCCGCCTCACGCCGCCGCCGCCGGTGCCCGATCCCGCACACGCGTATCCCTCCAGCTCGCCGCCCGCCAGCCCGGCATGGAGCGCGTCGCCGGCGGCGGCGGAGGANNTTNCGGCGAGGCGCGGGGTGCANACGCGCCGCCGCCGCCGCCGGTGGCGGCAGGGGGCGGGGGCCGGGCGGTGAAAGGGA] [+] EMBL AU181183 [GAGGTGAAGCCCCCCGCTCCACTCCTCCCAACTCCGCCGCCTCACGCCGCCGCCGCCGGTGCCCGATCCCGCACACGCGTATCCCTCCAGCTCGCCGCCCGCCAGCCCGGCATGGAGCGCGTCGCCGGCGGCGGCGGAGGANNTTNCGGCGAGGCGCGGGGTGCANACGCGCCGCCGCCGCCGCCGGTGGCGGCAGGGGGCGGGGGCCGGGCGGTGAAAGGGA] consensusID : consensus_11299#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 168 fasta sequence [NAGGTGAAGCCCCCCGCTCCACTCCTCCCAACTCCGCCGCCTCACGCCGCCGCCGCCGGTGCCCGATCCCGCACACGCGTATCCNTCCAGCTCGNCGCCCGNNAGCCCGGCATGGAGCGCGTNGCCGGCGGGGNGGAAGGAGGAGCCGGCGAGGCGCGGGGTGCAGAC] [+] EMBL AU069090 [NAGGTGAAGCCCCCCGCTCCACTCCTCCCAACTCCGCCGCCTCACGCCGCCGCCGCCGGTGCCCGATCCCGCACACGCGTATCCNTCCAGCTCGNCGCCCGNNAGCCCGGCATGGAGCGCGTNGCCGGCGGGGNGGAAGGAGGAGCCGGCGAGGCGCGGGGTGCAGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11299#1 GAGGTGAAGCCCCCCGCTCCACTCCTCCCAACTCCGCCGCCTCACGCCGCCGCCGCCGGT 60 consensus_11299#2 NAGGTGAAGCCCCCCGCTCCACTCCTCCCAACTCCGCCGCCTCACGCCGCCGCCGCCGGT 60 consensus_11299#0 -----------------------------------GCCGCCTCACGCCGCCGCCGCCGGT 25 ************************* consensus_11299#1 GCCCGATCCCGCACACGCGTATCCCTCCAGCTCGCCGCCCGCCAGCCCGGCATGGAGCGC 120 consensus_11299#2 GCCCGATCCCGCACACGCGTATCCNTCCAGCTCGNCGCCCGNNAGCCCGGCATGGAGCGC 120 consensus_11299#0 GCCCGATCCCGCACACGCGTATCCCTCCAGCTCGCCGCCCGCCAGCCCGGCATGGAGCGN 85 ************************ ********* ****** **************** consensus_11299#1 GTCG-CCGGCGGCGGCGGAGGANNTTNCGGCGAGGCGCGGGGTGCANACGCGCCGCCGCC 179 consensus_11299#2 GTNG-CCGGCGGGGNGGAAGGAGGAGCCGGCGAGGCGCGGGGTGCAGAC----------- 168 consensus_11299#0 GTNNGCNGGCCGGNGCGGAGGAGGAGCNGGCGAGGCGCGGGGTGCAGACGCGCCGCCGCC 145 ** * *** * * **** ****************** ** consensus_11299#1 GCCGCCGGTGGCGGCAGGGGGCGGGGGCCGGGCGGTGAAAGGGA---------------- 223 consensus_11299#2 ------------------------------------------------------------ consensus_11299#0 GCCGCCGGTGGCG-CAGGGGGCGGGGGCGGGGCGGTGAAGGGGAAGTCCTGCAAGGCTAC 204 consensus_11299#1 ------------------------------------------------------------ consensus_11299#2 ------------------------------------------------------------ consensus_11299#0 CTCTTCTACTCGTCGTCGCTCAGGTCGCGAGACCGCGGTCCCGTCTGCGCCGGAATCACC 264 consensus_11299#1 ------------------------------------------------------------ consensus_11299#2 ------------------------------------------------------------ consensus_11299#0 CGCGCCATCCCCCAAGTCCCTGATCACATGGTTGGAGAAATTGAGATGGAAGCTATCCAT 324 consensus_11299#1 ------------------------------------------------------------ consensus_11299#2 ------------------------------------------------------------ consensus_11299#0 GAAGGTCGCAACCTTTCCGACTTCAGATATGGATGTATCGGCTATTCCATGTATCTGGAT 384 consensus_11299#1 ------------------------------------------------------------ consensus_11299#2 ------------------------------------------------------------ consensus_11299#0 GACAAGAAGAGTTCTGAAGGGAAAGGTGACAAGCACCCGCAACTGCCTATTTGTGTTGGA 444 consensus_11299#1 ------------------------------------------------------------ consensus_11299#2 ------------------------------------------------------------ consensus_11299#0 ATCGAGCTATTGGCTGATAGAAAAACTTCGACTAATCAGGCTTCATCTCACCATAAAAAG 504 consensus_11299#1 ------------------------------------------------------------ consensus_11299#2 ------------------------------------------------------------ consensus_11299#0 GAAGCTCCCCAACCACGGCGATATAAGCCTGCACAGAGAGGAGATGATTTCTTAACCAAA 564 consensus_11299#1 ------------------------------------------------------------ consensus_11299#2 ------------------------------------------------------------ consensus_11299#0 TTTCACATGAATGCTGGACTTGTGGCAAATGGTGTAGCAAGGAACTTAAATAAAGTTGGG 624 consensus_11299#1 ------------------------------------------------------------ consensus_11299#2 ------------------------------------------------------------ consensus_11299#0 GCCTACATTAAAGACACCATGGATGATATCATGTATCCTTACCGCAAACGTCCAAAGTAA 684 consensus_11299#1 ------------------------------------------------------------ consensus_11299#2 ------------------------------------------------------------ consensus_11299#0 AACCTAGATCTGGTTCTTTTTTAATCCTGAAGAAGAGTAGACAAACGGGGGAGTGTCTAA 744 consensus_11299#1 ------------------------------------------------------------ consensus_11299#2 ------------------------------------------------------------ consensus_11299#0 TCCACTACTTCCTGAAACACCTGGCTAGCACATAGATAGGCTCTGTAGGCAGTTATATGG 804 consensus_11299#1 ------------------------------------------------------------ consensus_11299#2 ------------------------------------------------------------ consensus_11299#0 AGGCCAAGTTGCACTCTATTCCGCTAGCTGTTTGGTGCCTTCACTTCATATCATGTTTCC 864 consensus_11299#1 ------------------------------------------------------------ consensus_11299#2 ------------------------------------------------------------ consensus_11299#0 CCCCTAGCCTTCTCCCGCTATTGCAATGAGTTCATTTTACTGGGTTCCATCCAGCAATGT 924 consensus_11299#1 ------------------------------------------------------------ consensus_11299#2 ------------------------------------------------------------ consensus_11299#0 ATAGGAGGTATGATGTAACACACAATATCACCTGCTTGAGGTCATACTTGCGACTTCTGA 984 consensus_11299#1 ------------------------------------- consensus_11299#2 ------------------------------------- consensus_11299#0 GAATAATATCATGTCACCATTGCGAGCCAAAAAAAAA 1021 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||