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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1130#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1964 fasta sequence
[CTCCCCTCCCGTCTTCTTTGCTCAAATAGCCATCGCGAGTCTCGCGAACTTCCCCAGCTGCCTCAAAGCCGGAGGAGCTCGCCGCCCACTCCATGCCTCGCGTGCTCCCCGCGGAGCCGGCGGCGACCAAGGCGGCGTTGGCTCGCGGTTTCTGACGAGCTCGCGGGCGCGGAGGCGGGGCGGTCGGCGACTCGGCGGCATCCCCTCCCTCCCTACGCTGCAACCGCAACAAGTAAGCCCGATCGATCGCTGCTCCTGCCTGTTTCAGTGTTTCTGCTCCGGTTAAAATTCAGAAAGTTCACGGGAAATGCATTGCGAATTTTAACTGTACAGATGTTTCGTTTAGTCCTATCTAGAAACTTTTTTTTTTTAACGGTTCGACCGCGACGACGTTTTTGTCTCAAATGAAAACGAAACGACGTTTTTAGTGGAGAGACTACAGCAAAATTTCCAATGTTCAGAACTAGGACCAGGAGGATACTCTAGTCTATAGCTATAGCTGCCATAAACGCAGATGATTTTGAGAAACGTGGCCCATGCACCACCACCACCACCGCGCCATAGCTAAACAACAAGACAACGTAACTCAGCTAGCTGCAGTTTCACTTTCACAGTAGGAGGAGGAAGGAAGCAAGGAACGCGAGAAAGAGGCCACAGCACATGCAGCTTCTTAAATACACAGTACCAACTAAAGTGTCGCAACAGTGCTCGTAGTATTATTGCAACGCAGCTAGTAGCCGAGAGCAGCGGTGTGTACCTCGACGTGTGTGACATGACATCCTAGGAAGAGATCTCTAGCCGCGCGCTGCCCGGCCTGAACAATGGCAGGATCGTCGGCAGTGCAGCGGCGCCGCTGCAACGCTACTAGCTACTCCTCCTCGCTGACACGAAGCATCAGCTTCGTTTACTACTTGTCATTAATAAAAATCTCGATAGCAGCAAGGTTTGGTTGAGTTGAGCTCATCCGGTGTCTTCTGACTTCCATGGTCAGCTTGCTCGCGTAATCTCGTCCGTTTTCTAATGCCTCTAGAGTCCAATGGAAATATGGAATCTTGCCCTTTATTTACGTCAGTAGTTGCTGTAGCTCTATCTGGCCCCTTCGTCAGGACAAAAGGCCACTGTCTCTAACATATTAAAATTCAAACGGCTTCGAAATGTTTACAAGTAGGTATACTTGCATTGGTTTCAATTTTAAAAAGGATCAAAAATATAGTTGGCGTATGAATGCTTCACCACTCATTTTTTTTCTGTTACTATAAGGAGTGGCATTCCTGTCCGTGCACGGGTCATGCAGTTCCAAATACTATTAATTAGCTCATTAACGTGTATTAGAACGCAAGAAGCCGAGATCGGCGCGCGGCTTTTGCTGTTCTTGTTATAACGGTTGCAGTAAAATTATTGGAGCTTTTGATGATAAACACGGCTTCTTTCCACATAGAAAGCTACTGAATTTCCCACTAAAACGAAGCGTTCATCAAACAATCACCTGTGTGGACCAAAGCAATAATAGCATCGTCTCTTAACTAATGCCATTAAAATTTAGGCCCAATTCGCTTTTGCTTAACCACCGAATGTACATTAAACATCAAATGAAGCGTGCAACTTGGTCGCCGCAACAAATACAATCATCGCCATGCCGTCCAAGCTATGGGTATCTATAGATACAATTATTTGGGGGACAAGGGCTCGGCATGTTTTTGCGCTGCTGTGTATTTAATTCTAGTCCGATGTGCAACAGAGTGGGATTGATGGCGACCCAAGATCAGTTTGTTTACAGCCAATCTTGTTTAACCTTAGGTGTACTTTGGTCACGCATAGCTTGTGCCCTGTTCTAAAGGACACGTGTAATGGTATCGATCACTACCCTGGTTTGAATTATGCCTTCTTTGTAAGCAGTGATCCTTTTGGAAAATTTGTAGGAACTAGTTCGATATTGGTAAATAATACTCGTAAGTACAACAATT]
[+] EMBL AK072040 [CTCCCCTCCCGTCTTCTTTGCTCAAATAGCCATCGCGAGTCTCGCGAACTTCCCCAGCTGCCTCAAAGCCGGAGGAGCTCGCCGCCCACTCCATGCCTCGCGTGCTCCCCGCGGAGCCGGCGGCGACCAAGGCGGCGTTGGCTCGCGGTTTCTGACGAGCTCGCGGGCGCGGAGGCGGGGCGGTCGGCGACTCGGCGGCATCCCCTCCCTCCCTACGCTGCAACCGCAACAAGTAAGCCCGATCGATCGCTGCTCCTGCCTGTTTCAGTGTTTCTGCTCCGGTTAAAATTCAGAAAGTTCACGGGAAATGCATTGCGAATTTTAACTGTACAGATGTTTCGTTTAGTCCTATCTAGAAACTTTTTTTTTTTAACGGTTCGACCGCGACGACGTTTTTGTCTCAAATGAAAACGAAACGACGTTTTTAGTGGAGAGACTACAGCAAAATTTCCAATGTTCAGAACTAGGACCAGGAGGATACTCTAGTCTATAGCTATAGCTGCCATAAACGCAGATGATTTTGAGAAACGTGGCCCATGCACCACCACCACCACCGCGCCATAGCTAAACAACAAGACAACGTAACTCAGCTAGCTGCAGTTTCACTTTCACAGTAGGAGGAGGAAGGAAGCAAGGAACGCGAGAAAGAGGCCACAGCACATGCAGCTTCTTAAATACACAGTACCAACTAAAGTGTCGCAACAGTGCTCGTAGTATTATTGCAACGCAGCTAGTAGCCGAGAGCAGCGGTGTGTACCTCGACGTGTGTGACATGACATCCTAGGAAGAGATCTCTAGCCGCGCGCTGCCCGGCCTGAACAATGGCAGGATCGTCGGCAGTGCAGCGGCGCCGCTGCAACGCTACTAGCTACTCCTCCTCGCTGACACGAAGCATCAGCTTCGTTTACTACTTGTCATTAATAAAAATCTCGATAGCAGCAAGGTTTGGTTGAGTTGAGCTCATCCGGTGTCTTCTGACTTCCATGGTCAGCTTGCTCGCGTAATCTCGTCCGTTTTCTAATGCCTCTAGAGTCCAATGGAAATATGGAATCTTGCCCTTTATTTACGTCAGTAGTTGCTGTAGCTCTATCTGGCCCCTTCGTCAGGACAAAAGGCCACTGTCTCTAACATATTAAAATTCAAACGGCTTCGAAATGTTTACAAGTAGGTATACTTGCATTGGTTTCAATTTTAAAAAGGATCAAAAATATAGTTGGCGTATGAATGCTTCACCACTCATTTTTTTTCTGTTACTATAAGGAGTGGCATTCCTGTCCGTGCACGGGTCATGCAGTTCCAAATACTATTAATTAGCTCATTAACGTGTATTAGAACGCAAGAAGCCGAGATCGGCGCGCGGCTTTTGCTGTTCTTGTTATAACGGTTGCAGTAAAATTATTGGAGCTTTTGATGATAAACACGGCTTCTTTCCACATAGAAAGCTACTGAATTTCCCACTAAAACGAAGCGTTCATCAAACAATCACCTGTGTGGACCAAAGCAATAATAGCATCGTCTCTTAACTAATGCCATTAAAATTTAGGCCCAATTCGCTTTTGCTTAACCACCGAATGTACATTAAACATCAAATGAAGCGTGCAACTTGGTCGCCGCAACAAATACAATCATCGCCATGCCGTCCAAGCTATGGGTATCTATAGATACAATTATTTGGGGGACAAGGGCTCGGCATGTTTTTGCGCTGCTGTGTATTTAATTCTAGTCCGATGTGCAACAGAGTGGGATTGATGGCGACCCAAGATCAGTTTGTTTACAGCCAATCTTGTTTAACCTTAGGTGTACTTTGGTCACGCATAGCTTGTGCCCTGTTCTAAAGGACACGTGTAATGGTATCGATCACTACCCTGGTTTGAATTATGCCTTCTTTGTAAGCAGTGATCCTTTTGGAAAATTTGTAGGAACTAGTTCGATATTGGTAAATAATACTCGTAAGTACAACAATT]
consensusID : consensus_1130#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 631 fasta sequence
[ACTCCATGCCTCGCGTGCTCCCCGCGGAGCCGGCGGCGACCAAGGCGGCGTTGGCTCGCGGTTTCTGACGAGCTCGCGGGCGCGGAGGCGGGGCGGTCGGCGACTCGGCGGCATCCCCTCCCTCCCTACGCTGCAACCGCAACAAGCTGCAGCAGCAGCGGCGGCGGCATGAGGCGCTGACCGGGCGGCGCCGTGGTGGTGGCGGAGGGATGTCGCGGCGGCACGGCCGGTTCCGGTTCGCCACCGGCGGCGGCGACGGCGACGGCGACGAGGAATGCGCTGGCGTGGCGGAGGTGCACCAGGCGGACTGCACGGTCGCAGACGTGCCGGGCCGCGAGCCGTCGGTGTCCACTGGTGCAACTGCTTCAACGATCTGTTTGATGCCCCCTGTGCGTCGCCTGACTCTGCTCCCCCATGCCTCTCCACCCGGCTTCCTGTCGCCCGCCGGCTCAGCTCACCACCACCCTGACGCGCGCCGACTCTCCGCTCGCCCCGCGCCCCACCCCGCAGCGCCAGGCCTGGACCCGCGGCGACGCCCGCGGGACGTGCGCCCGTGCCCCGGACGGAGCGCCCCAGCATCGCCGGCACGAGCCACCCGCATTGCCGACCCCATCCCGCCGCCGCCGGCGTC]
[+] EMBL CA754578 [ACTCCATGCCTCGCGTGCTCCCCGCGGAGCCGGCGGCGACCAAGGCGGCGTTGGCTCGCGGTTTCTGACGAGCTCGCGGGCGCGGAGGCGGGGCGGTCGGCGACTCGGCGGCATCCCCTCCCTCCCTACGCTGCAACCGCAACAAGCTGCAGCAGCAGCGGCGGCGGCATGAGGCGCTGACCGGGCGGCGCCGTGGTGGTGGCGGAGGGATGTCGCGGCGGCACGGCCGGTTCCGGTTCGCCACCGGCGGCGGCGACGGCGACGGCGACGAGGAATGCGCTGGCGTGGCGGAGGTGCACCAGGCGGACTGCACGGTCGCAGACGTGCCGGGCCGCGAGCCGTCGGTGTCCACTGGTGCAACTGCTTCAACGATCTGTTTGATGCCCCCTGTGCGTCGCCTGACTCTGCTCCCCCATGCCTCTCCACCCGGCTTCCTGTCGCCCGCCGGCTCAGCTCACCACCACCCTGACGCGCGCCGACTCTCCGCTCGCCCCGCGCCCCACCCCGCAGCGCCAGGCCTGGACCCGCGGCGACGCCCGCGGGACGTGCGCCCGTGCCCCGGACGGAGCGCCCCAGCATCGCCGGCACGAGCCACCCGCATTGCCGACCCCATCCCGCCGCCGCCGGCGTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1130#0 CTCCCCTCCCGTCTTCTTTGCTCAAATAGCCATCGCGAGTCTCGCGAACTTCCCCAGCTG 60
consensus_1130#1 ------------------------------------------------------------
consensus_1130#0 CCTCAAAGCCGGAGGAGCTCGCCGCCCACTCCATGCCTCGCGTGCTCCCCGCGGAGCCGG 120
consensus_1130#1 ---------------------------ACTCCATGCCTCGCGTGCTCCCCGCGGAGCCGG 33
*********************************
consensus_1130#0 CGGCGACCAAGGCGGCGTTGGCTCGCGGTTTCTGACGAGCTCGCGGGCGCGGAGGCGGGG 180
consensus_1130#1 CGGCGACCAAGGCGGCGTTGGCTCGCGGTTTCTGACGAGCTCGCGGGCGCGGAGGCGGGG 93
************************************************************
consensus_1130#0 CGGTCGGCGACTCGGCGGCATCCCCTCCCTCCCTACGCTGCAACCGCAACAAGTA--AGC 238
consensus_1130#1 CGGTCGGCGACTCGGCGGCATCCCCTCCCTCCCTACGCTGCAACCGCAACAAGCTGCAGC 153
***************************************************** ***
consensus_1130#0 CCGATCGATCGCTGCTCCTGCCTGTTTCAGTGTTTCTGCTCCGGTTAAAATTCAGAAAGT 298
consensus_1130#1 AGCAGCGGCGGCGGCATGAGGCGCTGACCGGGCGGC-GCCGTGGTGGTGGCGGAGGGATG 212
* ** ** ** * * * * * * * ** *** ** *
consensus_1130#0 TCACGG-GAAATGC---ATTGCGAATTTTAACTGTACAGATGTTTCGTTTAGTCCTATCT 354
consensus_1130#1 TCGCGGCGGCACGGCCGGTTCCGGTTCGCCACCG-GCGGCGGCGACGGCGACGGCGACGA 271
** *** * * * ** ** * ** * * * * ** * * *
consensus_1130#0 AGAAACTTTTTTTTTTTAACGGTTCGACCGCGACGACGTTTTTGTCTCAAATGAAAACGA 414
consensus_1130#1 GGAATGCGCTGGCGTGGCGGAGGTGCACCAGGCGGACTGCACGGTCGCAGACGTGCCGGG 331
*** * * * * *** * *** *** ** * * *
consensus_1130#0 AACGACGTTTTTAGTGGAGAGACTACAGCAAAATTTCCAATGTTCAGAACTAGGACCAGG 474
consensus_1130#1 CCGCGAGCCGTCGGTGTCCA--CTGGTGCAACTGCTTCAACGATCTGTTTGATGCCCCCT 389
* * *** * ** **** * *** * ** * * * **
consensus_1130#0 AGGATACTCTAGTCTATAGCTATAGCTGCCA-TAAACGCAGATGATTTTGAGAAACGTGG 533
consensus_1130#1 GTGCGTCGCCTGACTCTGCTCCCCCATGCCTCTCCACCCGGCTTCCTGTCGCCCGCCGGC 449
* * * * ** * **** * ** * * * * * * *
consensus_1130#0 CCCATGCACCACCACCACCACCGCGCCATAGCTAAACAACAAGACAACGTAACTCAGC-T 592
consensus_1130#1 TCAGCTCACCACCACC-CTGACGCGCGCCGACTCTCCGCTCGCCCCGCGCCCCACCCCGC 508
* ********** * ***** ** * * ** * * *
consensus_1130#0 AGCTGCAGTTTCACTTTCACAGTAGGA---GGAGGAAGGAAGCAAGGAACGCGAGAAAGA 649
consensus_1130#1 AGCGCCAGGCCTGGACCCGCGGCGACGCCCGCGGGACGTGCGCCCGTGCCCCGGACGGAG 568
*** *** * * * * *** * ** * * **
consensus_1130#0 GGCCACAGCACATGCAGCTTCTTAAATACACAGTACCAACTAAAGTGTCGCAACAGTGCT 709
consensus_1130#1 CGCCCCAGCATCGCCGGCACGAGCCACCCGCATTGCCGACCCCA-TCCCGCCGCCGCCGG 627
*** ***** * ** * * ** * ** ** * * *** * *
consensus_1130#0 CGTAGTATTATTGCAACGCAGCTAGTAGCCGAGAGCAGCGGTGTGTACCTCGACGTGTGT 769
consensus_1130#1 CGTC-------------------------------------------------------- 631
***
consensus_1130#0 GACATGACATCCTAGGAAGAGATCTCTAGCCGCGCGCTGCCCGGCCTGAACAATGGCAGG 829
consensus_1130#1 ------------------------------------------------------------
consensus_1130#0 ATCGTCGGCAGTGCAGCGGCGCCGCTGCAACGCTACTAGCTACTCCTCCTCGCTGACACG 889
consensus_1130#1 ------------------------------------------------------------
consensus_1130#0 AAGCATCAGCTTCGTTTACTACTTGTCATTAATAAAAATCTCGATAGCAGCAAGGTTTGG 949
consensus_1130#1 ------------------------------------------------------------
consensus_1130#0 TTGAGTTGAGCTCATCCGGTGTCTTCTGACTTCCATGGTCAGCTTGCTCGCGTAATCTCG 1009
consensus_1130#1 ------------------------------------------------------------
consensus_1130#0 TCCGTTTTCTAATGCCTCTAGAGTCCAATGGAAATATGGAATCTTGCCCTTTATTTACGT 1069
consensus_1130#1 ------------------------------------------------------------
consensus_1130#0 CAGTAGTTGCTGTAGCTCTATCTGGCCCCTTCGTCAGGACAAAAGGCCACTGTCTCTAAC 1129
consensus_1130#1 ------------------------------------------------------------
consensus_1130#0 ATATTAAAATTCAAACGGCTTCGAAATGTTTACAAGTAGGTATACTTGCATTGGTTTCAA 1189
consensus_1130#1 ------------------------------------------------------------
consensus_1130#0 TTTTAAAAAGGATCAAAAATATAGTTGGCGTATGAATGCTTCACCACTCATTTTTTTTCT 1249
consensus_1130#1 ------------------------------------------------------------
consensus_1130#0 GTTACTATAAGGAGTGGCATTCCTGTCCGTGCACGGGTCATGCAGTTCCAAATACTATTA 1309
consensus_1130#1 ------------------------------------------------------------
consensus_1130#0 ATTAGCTCATTAACGTGTATTAGAACGCAAGAAGCCGAGATCGGCGCGCGGCTTTTGCTG 1369
consensus_1130#1 ------------------------------------------------------------
consensus_1130#0 TTCTTGTTATAACGGTTGCAGTAAAATTATTGGAGCTTTTGATGATAAACACGGCTTCTT 1429
consensus_1130#1 ------------------------------------------------------------
consensus_1130#0 TCCACATAGAAAGCTACTGAATTTCCCACTAAAACGAAGCGTTCATCAAACAATCACCTG 1489
consensus_1130#1 ------------------------------------------------------------
consensus_1130#0 TGTGGACCAAAGCAATAATAGCATCGTCTCTTAACTAATGCCATTAAAATTTAGGCCCAA 1549
consensus_1130#1 ------------------------------------------------------------
consensus_1130#0 TTCGCTTTTGCTTAACCACCGAATGTACATTAAACATCAAATGAAGCGTGCAACTTGGTC 1609
consensus_1130#1 ------------------------------------------------------------
consensus_1130#0 GCCGCAACAAATACAATCATCGCCATGCCGTCCAAGCTATGGGTATCTATAGATACAATT 1669
consensus_1130#1 ------------------------------------------------------------
consensus_1130#0 ATTTGGGGGACAAGGGCTCGGCATGTTTTTGCGCTGCTGTGTATTTAATTCTAGTCCGAT 1729
consensus_1130#1 ------------------------------------------------------------
consensus_1130#0 GTGCAACAGAGTGGGATTGATGGCGACCCAAGATCAGTTTGTTTACAGCCAATCTTGTTT 1789
consensus_1130#1 ------------------------------------------------------------
consensus_1130#0 AACCTTAGGTGTACTTTGGTCACGCATAGCTTGTGCCCTGTTCTAAAGGACACGTGTAAT 1849
consensus_1130#1 ------------------------------------------------------------
consensus_1130#0 GGTATCGATCACTACCCTGGTTTGAATTATGCCTTCTTTGTAAGCAGTGATCCTTTTGGA 1909
consensus_1130#1 ------------------------------------------------------------
consensus_1130#0 AAATTTGTAGGAACTAGTTCGATATTGGTAAATAATACTCGTAAGTACAACAATT 1964
consensus_1130#1 -------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||