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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11303#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 889 fasta sequence
[CTATGTACAACTTGCAAATATCTATGCTGGCGCAAATCAGTGGGATGATGTCTCTAGAGTAAGGAGGTGGATGAAGGATAATGCAGTTGTGAAAACACCTGGGTATAGCTGGATAGAGATTAAGGGTGTGATGCATGAGTTTAGATCAAATGACAGATTGCACCCTCAGCTTTACTTGATCCATGAAAAACTGGGCCAGTTAGCGGAGAGGATGAAGGCAATGGGTTATGTTCCAGATCTTGATTTTGTCCTGCATGATGTGGATGAAACTCTGAAGGTGCAGATGCTAATGAGGCACAGTGAGAAGCTTGCTATTTCTTTTGGTCTGATTAGTACTGCTCCTGGGATGACCTTGAGGATTTTCAAGAATCTCAGGGTTTGTGGAGACTGTCATAATGCAGCCAAGGTCATCTCCAAGATCGAGGATCGAGAAATCATTTTGAGGGATACTACACGATTCCACCATTTTAGAGGAGGGCATTGCTCATGTGGTGATTACTGGTGAAGAATGTCGATGACAACAGATATATACTGGCATTTTTTTATGGGGATTCAGCACTATTTAGTCCTGTAACAAGGAAAAATGNTGATCACTGTATACAGGAAGCACTCAACAGTCAACATGACCGACCAATGTCCAATGATGAACTGCAAGATATAGAGAAAGNGTCAATTCTGAGTCCTTTTCTGCTTCATATGGNGAGAGCATCTTTTCAAGATGGTCATGGAAAGGAATAACAGNGAGATTGGNGAANGNCAGCAATCAGCATCATCTGCAAAGGTCATAAGGTAGAGATTCTCTACATTTTACATGGCAAAAAAAGCATTTCCCGCATGGTAGAGATCATCAGCATCACCTNCNCAA-NTTCAGGAGCC-GGGGNATCCTGGA]
[+] EMBL CA764192 [CTATGTACAACTTGCAAATATCTATGCTGGCGCAAATCAGTGGGATGATGTCTCTAGAGTAAGGAGGTGGATGAAGGATAATGCAGTTGTGAAAACACCTGGGTATAGCTGGATAGAGATTAAGGGTGTGATGCATGAGTTTAGATCAAATGACAGATTGCACCCTCAGCTTTACTTGATCCATGAAAAACTGGGCCAGTTAGCGGAGAGGATGAAGGCAATGGGTTATGTTCCAGATCTTGATTTTGTCCTGCATGATGTGGATGAAACTCTGAAGGTGCAGATGCTAATGAGGCACAGTGAGAAGCTTGCTATTTCTTTTGGTCTGATTAGTACTGCTCCTGGGATGACCTTGAGGATTTTCAAGAATCTCAGGGTTTGTGGAGACTGTCATAATGCAGCCAAGGTCATCTCCAAGATCGAGGATCGAGAAATCATTTTGAGGGATACTACACGATTCCACCATTTTAGAGGAGGGCATTGCTCATGTGGTGATTACTGGTGAAGAATGTCGATGACAACAGATATATACTGGCATTTTTTTATGGGGATTCAGCACTATTTAGTCCTGTAACAAGGAAAAATGNTGATCACTGTATACAGGAAGCACTCAACAGTCAACATGACCGACCAATGTCCAATGATGAACTGCAAGATATAGAGAAAGNGTCAATTCTGAGTCCTTTTCTGCTTCATATGGNGAGAGCATCTTTTCAAGATGGTCATGGAAAGGAATAACAGNGAGATTGGNGAANGNCAGCAATCAGCATCATCTGCAAAGGTCATAAGGTAGAGATTCTCTACATTTTACATGGCAAAAAAAGCATTTCCCGCATGGTAGAGATCATCAGCATCACCTNCNCAA NTTCAGGAGCC GGGGNATCCTGGA]
[+] EMBL CB674023 [ AAATGACCCATTGCACCCTCAGCTTTACTTGATCCATGAAAAACTGGGCCAGTTAGCGGAGAGGATGAAGGCAATGGGTTATGTTCCAGATCTTGATTTTGTCCTGCATGATGTGGATGAAACTCTGAAGGTGCAGATGCTAATGAGGCACAGTGAGAAGCTTGCTATTTCTTTTGGTCTGATTAGTACTGCTCCTGGGATGACCTTGAGGATTTTCAAGAATCTCAGGGTTTGTGGAGACTGTCATAATGCAGCCAAGGTCATCTCCAAGATCGAGGATCGAGAAATCATTTTGAGGGATACTACACGATTCCACCATTTTAGAGGAGGGCATTGCTCATGTGGTGATTACTGGTGAAGAATGTCTATGACAACAGATATATACTGGCATTTTTTTATGGGGATTCAGCACTATTTACTCCTGTAACAAGGAAAAATGTTGATCACTGTATACAGGAAGCACTCAACAGTCAACATGACCGACCAATGTCCAATGATGAACTGCAAGATATAGAGAAAGTGTCAATTCTGAGTCCTTTTCTGTTTCATATGGTGAGAGCATCTTTTCAAGATGGTCATGGAAAGGAATAACAGTGAGATTGGTGAAGGCCAGCAATCAGCATCATCTGCAAAGGTCATAAGGTAGAGATTCTCTACATTTTCCATGTCAAAAAAAGCATTTCCCGCAATGTAGAGATCATCAGCATCAACTCCACAATATTCAGGAGCCTGNGGAATa ]
consensusID : consensus_11303#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 724 fasta sequence
[AGTGTCAATTCTGAGTCCTTTTCTGTTTCATATGGTGAGAGCATCTTTTCAAGATGGTCATGGAAAGGAATAACAGTGAGATTGGTGAAGGCCAGCAATCAGCATCATCTGCAAAGGTCATAAGGTAGAGATTCTCTACATTTTCCATGTCAAAAAAAGCATTTCCCGCAATGTAGAGATCATCAGCATCAACTCCACAATATTCAGGAGCCTGGGGAATACTGTAAGAACAAGGTAGCGTGAGGGACATTCTTCTCGGGACAGACAATATATGCTCTAGATGTCTATTACAGTGATTTCTGAATATGCCGCCGTCTTAAGAACAAGGTAGAGTGAGGCACATTCTTCTCGGACAGAGAATATATAGAAGAGTGGCAAGACAAAGAAAAACTCTACATGCATATTCCAGTGATTTCTGAATATTCACTGTTATATGTTCTCGCTTTGTTCACCTATAAATCAGCATCTTATATTATCTCTGGTGCAGCAGAAACCCGTCATGCTAACAAGGTTACGGCGTCGCAAAATATTGGAAAAGAGAAGTTTGTGGTTCTGAAAGTGTCGATCTGTGTATATCATAGCTTTTGTGGCTGAATGTATACTACTTGTAATTGCAATTGTGAAGTACCTGTAAAAAAAAAACATACTGGTTTATTCTTCCGTTGCCTTATGTCTGTCATAGTTGGATAAGGGTGTTTTGATTGAAATTTGGATTTAGACCCGG]
[-] EMBL CB674024 [AGTGTCAATTCTGAGTCCTTTTCTGTTTCATATGGTGAGAGCATCTTTTCAAGATGGTCATGGAAAGGAATAACAGTGAGATTGGTGAAGGCCAGCAATCAGCATCATCTGCAAAGGTCATAAGGTAGAGATTCTCTACATTTTCCATGTCAAAAAAAGCATTTCCCGCAATGTAGAGATCATCAGCATCAACTCCACAATATTCAGGAGCCTGGGGAATACTGTAAGAACAAGGTAGCGTGAGGGACATTCTTCTCGGGACAGACAATATATGCTCTAGATGTCTATTACAGTGATTTCTGAATATGCCGCCGTCTTAAGAACAAGGTAGAGTGAGGCACATTCTTCTCGGACAGAGAATATATAGAAGAGTGGCAAGACAAAGAAAAACTCTACATGCATATTCCAGTGATTTCTGAATATTCACTGTTATATGTTCTCGCTTTGTTCACCTATAAATCAGCATCTTATATTATCTCTGGTGCAGCAGAAACCCGTCATGCTAACAAGGTTACGGCGTCGCAAAATATTGGAAAAGAGAAGTTTGTGGTTCTGAAAGTGTCGATCTGTGTATATCATAGCTTTTGTGGCTGAATGTATACTACTTGTAATTGCAATTGTGAAGTACCTGTAAAAAAAAAACATACTGGTTTATTCTTCCGTTGCCTTATGTCTGTCATAGTTGGATAAGGGTGTTTTGATTGAAATTTGGATTTAGACCCGG]
consensusID : consensus_11303#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 551 fasta sequence
[TTTTTTTGAAGAATAAACCAGTATGTTTTTTTTTTACAGGTACTTCACAATTGCAATTACAAGTAGTATACATTCAGCCACAAAAGCTATGATATACACAGATCGACACTTTCAGAACCACAAACTTCTCTTTTCCAATATTTTGCGACGCCGTAACCTTGTTAGCATGACGGGTTTCTGC-TGCACCAGAGATAATATAAGATGCTGATTTATAGGTGAACAAAGCGA-GAA-CATATAACAGTGAATATTCAGAAATCAC-TGG-AATATGC-ATGTAGAGTTTTTCTT-TGTCTTGCCACTCTTCTATATATTCTCTGTCCGAGAAGAATG-TGCCTCACTCTACCT-TG-TTCTGCATAAGTTATGACATATGATCACACATTGTGCTGAAAATATCAT-CACAAGCTGAAAAAGTTTTTCTT-TGTATTGCCTCACCCTGCCT-TGTTCTTAAGACGGCGGCATATTCAGAAATCACTGTAATAGACATCTAGAGCATATATTGTCTGTCCCGAGAAGAATGTCCCTCACGCTACCTTGTTCTTACAGTATTCCCCAGG]
[-] EMBL BI812402 [TTTTTTTG GAATAAACCAGTATGTTTTTTTTTTACAGGTACTTCACAATGGCAATTACAAGTAGTATACATTCAGCCACAAAAGCTATGATATACACAGATCGACACTTTCAGAACCACAAACTTCTCTTTTCCAATA TTTGCGACGCCGTAACCTTGTTAGCATGACGGGTTTCTGCGTGCACCAGAGATAATATAAGATGCTGATTTATAGGTGAACAAAGCGAGGAACCATATAACAGTGAATATTCAGAAATCAC TGGAAATATGCAATGTAGAG TTTTCTTGGGTCTTGCCACTCTTCTATATATTCTCTGTCCGAGAAGAATGTTGCCTCACTCTACCT TGTTTCTG ATAAGTTATGACATATGATCACACATTGTGCTGAAAATATCATCCACAAGCTGAAAAAGTTTTTCTT TGTATTG CTCACCCTGCCTGTGTTCTTAAGACGG GGCATATTCAGAAATCACTGTAATAGACATCTAGAGCATATATTGTCTGTCCCGAGA ]
[-] EMBL BI812324 [TTTTTTT GAATAAACCAGTATGTTTTTTTTTTACAGGTACTTCACAA TGCAATTACAAGTAGTATACATTCAGCCACAAAAGCTATGATATACACAGATCGACACTTTCAGAACCACAAACTTCTCTTTTCCAATATTTTGCGACGCCGTAACCTTGTTAGCATGACGGGTTTCTGC TGCACCAGAGATAATATAAGATGCTGATTTATAGGTGAACAAAGCGA GAA CATATAACAGTGAATATTCAGAAATCACGTGG AATATGC ATGTAGAGTTTTTCTT TGTCTTGCCACTCTTCTATATATTCTCTGTCCGAGAAGAATG TGCCTCACTCTACCTGTG TTCTGCATAAGTTATGACATATGATCACACATTGTGCTGAAAATATCAT CACAAGCTGAAAAAGTTTTTCTTGTGTATTG CTCACCCTGCCT TGTTCTTAAGACGGCGGCATATTCAGAAATCACTGTAATAGACATCTAGAGCATATATTGTCTGTCCCGAG ]
[+] EMBL CF322862 [ TTTTTTGAAGAATAAACCAGTATGTTTTTTTTTTACAGGTACTTCACAATTGCAATTACAAGTAGTATACATTCAGCCACAAAAGCTATGATATACACAGATCGACACTTTCAGAACCACAAACTTCTCTTTTCCAATATTTTGCGACGCCGTAACCTTGTTAGCATGACGGGTTTCTGC TGCACCAGAGATAATATAAGATGCTGATTTATAGGTGAACAAAGCGA GAA CATATAACAGTGAATATTCAGAAATCAC TGG AATATGC ATGTAGAGTTTTTCTT TGTCTTGCCACTCTTCTATATATTCTCTGTCCGAGAAGAATG TGCCTCACTCTACCT TG TTCTGCATAAGTTATGACATATGATCACACATTGTGCTGAAAATATCAT CACAAGCTGAAAAAGTTTTTCTT TGTATTGCCTCACCCTGCCT TGTTCTTAAGACGGCGGCATATTCAGAAATCACTGTAATAGACATCTAGAGCATATATTGTCTGTCCCGAGAAGAATGTCCCTCACGCTACCTTGTTCTTACAGTATTCCCCAGG]
[+] EMBL CF322788 [ TTTTTTGAAGAATAAACCAGTATGTTTTTTTTTTACAGGTACTTCACAATTGCAATTACAAGTAGTATACATTCAGCCACAAAAGCTATGATATACACAGATCGACACTTTCAGAACCACAAACTTCTCTTTTCCAATATTTTGCGACGCCGTAACCTTGTTAGCATGACGGGTTTCTGC TGCACCAGAGATAATATAAGATGCTGATTTATAGGTGAACAAAGCGA GAA CATATAACAGTGAATATTCAGAAATCAC TGG AATATGC ATGTAGAGTTTTTCTT TGTCTTGCCACTCTTCTATATATTCTCTGTCCGAGAAGAATG TGCCTCACTCTACCT TG TTCTGCATAAGTTATGACATATGATCACACATTGTGCTGAAAATATCAT CACAAGCTGAAAAAGTTTTTCTT TGTATTGCCTCACCCTGCCT TGTTCTTAAGACGGCGGCATATTCAGAAATCACTGTAATAGACATCTAGAGC ]
[+] EMBL AU225853 [gccgctgGAAGAATAAACCAGTATGTTTTTTTTTTACAGGTACTTCACAATTGCAATTACAAGTAGTATACATTCAGCCACAAAAGCTATGATATACACAGATCGACACTTTCAGAACCACAAACTTCTCTTTTCCAATATTTTGCGACGCCGTAACCTTGTTAGCATGACGGGTTTCTGC TGCACCAGAGATAATATAAGATGCTGATTTATAGGTGAACAAAGCGA GAA CATATAACAGTGAATATTCAGAAATCAC TGG AATATGC ATGTAGAGTTTTTCTT TGTCTTGCCACTCTTCTATATATTCTCTGTCCGAGAAGAATG TGCCTCACTCTACCT TG TTCTGCATAAGTTATGACATATGATCACACATTGTGCTGAAAATATCAT CACAAGCTGAAAAAGTTTTTCTT TGTATTGCCTCACCCTGCCT TGTTCTTAAGACGGCGGCATATTCAGAAATCACTGTAATAGACATCTAGAGCATAT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11303#0 CTATGTACAACTTGCAAATATCTATGCTGGCGCAAATCAGTGGGATGATGTCTCTAGAGT 60
consensus_11303#1 ---AGTGTCAATTCTGAGT-CCTTTTCTGTTTCATAT-GGTGAGAGCATCTTTTCAAGAT 55
consensus_11303#2 ------------------------------------------------------------
consensus_11303#0 AAGGAGGTGGATGAAGGATAATGCAGTTG-TGAA----AACACCTGGGTATAGCTGGATA 115
consensus_11303#1 GGTCATGGAAAGGAATAACAGTGAGATTGGTGAAGGCCAGCAATCAGCATCATCTGCAAA 115
consensus_11303#2 ------------------------------------------------------------
consensus_11303#0 GAGATTAAGGGTGTGATGCATGAGTTTAGATCAAATGACAGATTGCACCCTCAGCTTTAC 175
consensus_11303#1 GGTCATAAGGTAGAGATTCTCTACATTTT-CCATGTCAAAAAAAGCATTTCCCGCAATGT 174
consensus_11303#2 ------------------------------TTTTTTTGAAGAATAAACCAGTATGTTTTT 30
* * * * *
consensus_11303#0 TTGATCCATGAAAAACTGGGCCA-GTTAGCGGAGAGGATGAAGGCAATGGGTTATGTTCC 234
consensus_11303#1 AGAGATCATCAGCATCAACTCCACAATATTCAGGAGCCTGGGG--AATACTGTAAGAACA 232
consensus_11303#2 TTTTTACAGGTACTTCACAATTGCAATTACAAGTAGTATACATTCAGCCACAAAAGCTAT 90
** * * ** * * * *
consensus_11303#0 AGATCTTGATTTTGTCCTGCATGATGTGGATGAAACTCTGAAGGTGCAGATGCTAATGAG 294
consensus_11303#1 AGGTAGCGTGAGGGACATTCTTCTCGGGACAGACAATAT-ATGCTCTAGATGTCTAT--- 288
consensus_11303#2 -GATATACACAGATCGACACTTTCAGAACCACAAACTTCTCTTTTCCAATATTTTGCGA- 148
* * * * * * * * * *
consensus_11303#0 GCACAGTGAGAAGCTTGCTATTTCTTTTGGTCTGATTAGTACTGCTCCTGGGATGACCTT 354
consensus_11303#1 -TACAGTGA-----TTTCTGAATATGCCGCCGTCTTAAGAACAAGG--TAGAGTGA---G 337
consensus_11303#2 -CGCCGTAA---CCTTGTTAGCATGACGGGTTTCTGCTGCACCAGAGATAATATAAGATG 204
* ** * ** * * * * ** * * *
consensus_11303#0 GAGGATTTTCAAGAATCTCAGGGTTTGTGGA-GACTGTCATAATGCAGCCAAGGTC-ATC 412
consensus_11303#1 GCACATTCTTCTCGGACAGAGAATATATAGAAGAGTGGCAAGACAAAGAAAAACTCTACA 397
consensus_11303#2 CTGATTTATAGGTGAACAAAGCGAGAACATATAACAGTGAATATTCAG---AAATC--AC 259
** * * ** * * * * * ** * **
consensus_11303#0 TCCAAGATCGAG-GATCGAGAAATCATTTTGAGGGATACTACACGAT-TCCACCATTTTA 470
consensus_11303#1 TGCATATTCCAGTGATTTCTGAAT-ATTCACTGTTATATGTTCTCGC-TTTGTTCACCTA 455
consensus_11303#2 TGGAATATGCAT--GTAGAGTTTTTCTTTGTCTTGCCACTCTTCTATATATTCTCTGTCC 317
* * * * * * ** * *
consensus_11303#0 GAGGAGGGCATTGCTCATGTGGTGAT-TACTGGTGAAGA-ATGTCG--ATGACAACAGAT 526
consensus_11303#1 TAAATCAGCAT--CTTATATTATCTC-TGGTGCAGCAGA-AACCCGTCATGCTAACAAGG 511
consensus_11303#2 GAGAAGAATGTGCCTCACTCTACCTTGTTCTGCATAAGTTATGACAT-ATGATCACACAT 376
* * ** * * ** ** * * *** ***
consensus_11303#0 ATATACTGGCATTTTTTTATGGGGATTCAGCACTATTTAGTCCTGTAACAAGGAAAAATG 586
consensus_11303#1 TTACGGCGTCGCAAAAT-ATTGGAAAAGAGAAGTTTGTGGTTCTG---------AAAGTG 561
consensus_11303#2 -TGTGCTGAAAATATCATCACAAGCTGAAAAAGTTTTTCTTTGTATTGCCTCACCCTGCC 435
* * * * * * * * *
consensus_11303#0 NTGATCACTGTATACAGGAAGCACTCAACAGTCAACATGACCGACCAATG--TCCAATGA 644
consensus_11303#1 TCGATCTGTGTATATCATA-GCTTTTGTGGCTGAATGTATACTACTTGTAATTGCAATTG 620
consensus_11303#2 TTGTTCTTAAGACGGCGGC-ATATTCAGAAATCACTGTAATAGACATCTA-----GAGCA 489
* ** * * * * * ** * *
consensus_11303#0 TGAACTGCAAGATATAGAGAAAGNGTCAATTCTGAGTCCTTTTCTGCTTCATATGGNGAG 704
consensus_11303#1 TGAAGTACCTG-TAAAAAAAAAACATACTGGTTTATTCTTCCGTTGCCT--TATGTCTGT 677
consensus_11303#2 TATATTGTCTGTCCCGAGAAGAATGTCCCTCACGCTACCTTGTTCTTACAGTATTCCCCA 549
* * * * * * * * * ***
consensus_11303#0 AGCATCTTTTCAAGATGGTCATGGAAAGGAATAACAGNGAGATTGGNGAANGNCAGCAAT 764
consensus_11303#1 CATAGTTGGATAAGGGTGTTTTGATTGAAATTTGGATTTAGACCCGG------------- 724
consensus_11303#2 GG---------------------------------------------------------- 551
consensus_11303#0 CAGCATCATCTGCAAAGGTCATAAGGTAGAGATTCTCTACATTTTACATGGCAAAAAAAG 824
consensus_11303#1 ------------------------------------------------------------
consensus_11303#2 ------------------------------------------------------------
consensus_11303#0 CATTTCCCGCATGGTAGAGATCATCAGCATCACCTNCNCAANTTCAGGAGCCGGGGNATC 884
consensus_11303#1 ------------------------------------------------------------
consensus_11303#2 ------------------------------------------------------------
consensus_11303#0 CTGGA 889
consensus_11303#1 -----
consensus_11303#2 -----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||