These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11310#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1473 fasta sequence [AGCCCGCGGCGACACCACCACCCACCAGCGTTAGCTTCTGCGTGTGGCCGTGGGCGCGCGCTCCGCCCGCGCCATGACGACCGCCACCGCCATCGTCGCCGGCCACGGCCTCGCGCTGCGCCGGAGCCTGCACCTCTCCAAGCCCAGCTGCGCCACCTTCTCCGCGCGCGCGCTTCCGCCCGCCGCCCATTGCTGCCGCACCGTCGTCGCCGCGGCCGCGCCGTCGTCGCGGACATGCCGGTGCCGGTCCGTCTCCTCCGAGAGCTCCACCGCCGCCGCGGCCGACACCGCCGACGACGAGGAGGAGGTGACCAAGAGCGACTCGGAGGAGGAGGAGATGGACCCGCTGGCGGAGGTGTGCTACCTGGACCCGGAGGCGGACGCGGAGGGGATCCGGGAGTGGGAGCTGGACTTCTGCTCGCGCCCAATCCTGGACGCGCGCGGGAAGAAGGTGTGGGAGCTGGTGGTGTGCGACGCGACGCTGTCCCTCCAGTTCACCCGCTTCTTCCCCAACACCTCCATCAACAGCGTCACCCTCCGCGACGCGCTCGCCTCCGTCGCCACCTCCCTCGGCGTGCCCCTCCCCGACCGCGCCCGCTTCTTCCGCTCCCAGATGCAGACCATCATCTCCCGCGCCTGCAACGAGCTCGGCGTCAAGGCCGTCCCCAGCCGCCGCTGCGTCTCCCTCCTCCTCTGGCTGGAG-GAGCGCTACGAGACGGTGTACAGCCGCCACCCGGGCTTCCAGTCCGGCACCAAGCCGCTGCTCACCCTCGACAACCCCTTCCCC-ACCAGCTTGCCGGAGAATCTCTT-CGGCGAC-AAGT-GGGCGTTCGTGCAGCTCCCCTTCTCCGCTGTGAGGGAGGAGGTGGAGTCGCTGGAGAGGAGGTATGCGTTTGGGGCGGGGCTCGACTTGGACCTCCTGGGGTTCGAGCTCGATGAGAACACCTTGATACCTGGGGTTGCCGTGGAATCTTCGCGAGCCAAGCCTCTAGCTGCTTGGATGAACGGTCTAGAGATCTGCTCAATGGAGGTTGACACGGGCAGGGCGAACCTGATCCTATCGGCGGGGGTCTCGACCAGGTACGTCTACGCCGGGTACCAGAAGAGCGCCGCGACGACGCAGGAAGCCGAGGCCTGGGAGGCGGCGAAGAAGGCCTGTGGCGGCCTGCACTTCCTGGCCATCCAGGAGAACCTCAACTCCGACGGGTGCGTTGGTTTCTGGCTCCTGCTGGACCTTCCCCCGCCGCCTGTATGATTGATCCTGCAGTCCGGAGAGTAGCATCTAGCAGCGTGTGTTTCCATCAAAGATCACTGTGTAGTATGTGTAGCTCCAGTAACAAAATTTTCAATACAAGATCCCTTCCATCTGTACTACACACTGGTGTACTAAGGAGGAAAAAAAGAAAAGAAGAGGAGATAAG-GGCTCTGTGTGTTTTCATGTGAGATATGAGTTTCTTAAGAAAAAAGGAAGGAATA] [+] EMBL AK099736 [AGCCCGCGGCGACACCACCACCCACCAGCGTTAGCTTCTGCGTGTGGCCGTGGGCGCGCGCTCCGCCCGCGCCATGACGACCGCCACCGCCATCGTCGCCGGCCACGGCCTCGCGCTGCGCCGGAGCCTGCACCTCTCCAAGCCCAGCTGCGCCACCTTCTCCGCGCGCGCGCTTCCGCCCGCCGCCCATTGCTGCCGCACCGTCGTCGCCGCGGCCGCGCCGTCGTCGCGGACATGCCGGTGCCGGTCCGTCTCCTCCGAGAGCTCCACCGCCGCCGCGGCCGACACCGCCGACGACGAGGAGGAGGTGACCAAGAGCGACTCGGAGGAGGAGGAGATGGACCCGCTGGCGGAGGTGTGCTACCTGGACCCGGAGGCGGACGCGGAGGGGATCCGGGAGTGGGAGCTGGACTTCTGCTCGCGCCCAATCCTGGACGCGCGCGGGAAGAAGGTGTGGGAGCTGGTGGTGTGCGACGCGACGCTGTCCCTCCAGTTCACCCGCTTCTTCCCCAACACCTCCATCAACAGCGTCACCCTCCGCGACGCGCTCGCCTCCGTCGCCACCTCCCTCGGCGTGCCCCTCCCCGACCGCGCCCGCTTCTTCCGCTCCCAGATGCAGACCATCATCTCCCGCGCCTGCAACGAGCTCGGCGTCAAGGCCGTCCCCAGCCGCCGCTGCGTCTCCCTCCTCCTCTGGCTGGAG GAGCGCTACGAGACGGTGTACAGCCGCCACCCGGGCTTCCAGTCCGGCACCAAGCCGCTGCTCACCCTCGACAACCCCTTCCCC ACCAGCTTGCCGGAGAATCTCTT CGGCGAC AAGT GGGCGTTCGTGCAGCTCCCCTTCTCCGCTGTGAGGGAGGAGGTGGAGTCGCTGGAGAGGAGGTATGCGTTTGGGGCGGGGCTCGACTTGGACCTCCTGGGGTTCGAGCTCGATGAGAACACCTTGATACCTGGGGTTGCCGTGGAATCTTCGCGAGCCAAGCCTCTAGCTGCTTGGATGAACGGTCTAGAGATCTGCTCAATGGAGGTTGACACGGGCAGGGCGAACCTGATCCTATCGGCGGGGGTCTCGACCAGGTACGTCTACGCCGGGTACCAGAAGAGCGCCGCGACGACGCAGGAAGCCGAGGCCTGGGAGGCGGCGAAGAAGGCCTGTGGCGGCCTGCACTTCCTGGCCATCCAGGAGAACCTCAACTCCGACGGGTGCGTTGGTTTCTGGCTCCTGCTGGACCTTCCCCCGCCGCCTGTATGATTGATCCTGCAGTCCGGAGAGTAGCATCTAGCAGCGTGTGTTTCCATCAAAGATCACTGTGTAGTATGTGTAGCTCCAGTAACAAAATTTTCAATACAAGATCCCTTCCATCTGTACTACACACTGGTGTACTAAGGAGGAAAAAAAGAAAAGAAGAGGAGATAAG GGCTCT ] [+] EMBL CB645134 [ ACCACCCACCAACGTTAGCTTCTGCGTGTGGCCGTGGGCGCGCGCTCCGCCCGCGCCATGACGACCGCCACCGCCATCGTCGCCGGCCACGGCCTCGCGCTGCGCCGGAGCCTGCACCTCTCCAAGCCCAGCTGCGCCACCTTCTCCGCGCGCGCGCTTCCGCCCGCCGCCCATTGCTGCCGCACCGTCGTCGCCGCGGCCGCGCCGTCGTCGCGGACATGCCGGTGCCGGTCCGTCTCCTCCGAGAGCTCCACCGCCGCCGCGGCCGACACCGCCGACGACGAGGAGGAGGTGACCAAGAGCGACTCGGAGGAGGAGGAGATGGACCCGCTGGCGGAGGTGTGCTACCTGGACCCGGAGGCGGACGCGGAGGGGATCCGGGAGTGGGAGCTGGACTTCTGCTCGCGCCCAATCCTGGACGCGCGCGGGAAGAAGGTGTGGGAGCTGGTGGTGTGCGACGCGACGCTGTCCCTCCAGTTCACCCGCTTCTTCCCCAACACCTCCATCAACAGCGTCACCCTCCGCGACGCGCTCGCCTCCGTCGCCACCTCCCTCGGCGTGCCCCTCCCCGACCGCGCCCGCTTCTTCCGCTCCCAGATGCAGACCATCATCTCCCGCGCCTGCAACGAGCTCGGCGTCAAGGCCGTCCCCAGCCGCCGCTGCGTCTCCCTCCTCCTCTGGCTGGAG GAGCGCTACGAGACGGTGTACAGCCGCCACCCGGGCTTCCAGTCCGGCACCAAGCCGC ] [+] EMBL CB682022 [ GCTTCCGCGTGTGGCCGTGGGCGCGCGCTCCGCCCGCGCCATGACGACCGCCACCGCCATCGTCGCCGGCCACGGCCTCGCGCTGCGCCGGAGCCTGCACCTCTCCAAGCCCAGCTGCGCCACCTTCTCCGCGCGCGCGCTTCCGCCCGCCGCCCATTGCTGCCGCACCGTCGTCGCCGCGGCCGCGCCGTCGTCGCGGACATGCCGGTGCCGGTCCGTCTCCTCCGAGAGCTCCACCGCCGCCGCGGCCGACACCGCCGACGACGAGGAGGAGGTGACCAAGAGCGACTCGGAGGAGGAGGAGATGGACCCGCTGGCGGAGGTGTGCTACCTGGACCCGGAGGCGGACGCGGAGGGGATCCGGGAGTGGGAGCTGGACTTCTGCTCGCGCCCAATCCTGGACGCGCGCGGGAAGAAGGTGTGGGAGCTGGTGGTGTGCGACGCGACGCTGTCCCTCCAGTTCACCCGCTTCTTCCCCAACACCTCCATCAACAGCGTCACCCTCCGCGACGCGCTCGCCTCCGTCGCCACCTCCCTCGGCGTGCCCCTCCCCGACCGCGCCCGCTTCTTCCGCTCCCAGATGCAGACCATCATCTCCCGCGCCTGCAACGAGCTCGGCGTCAAGGACGTCCCCAGCCGCCGCTGCGTCTCCCTCCTCCTCTGGATGGAG GAG ] [-] EMBL BI809073 [ TCGCGGACATGCCGGTGCCGGTCCGTCTCCTCCGAGAGCTCCACCGCCGCCGCGG CGACACCGCCGACGACGAGGAGGAGGAGACCAAGAGCGACTCGGAGGAGGAGGAGATGGACCCGCTGGCGGAGGTGTGCTACCTGGACCCGGAGGCGGACGCGGAGGGGATCCGGGAGTGGGAGCTGGACTTCTGCTCGCGCCCAATCCTGGACGCGCGCGGGAAGAAGGTGTGGGAGCTGGTGGTGTGCGACGCGACGCTGTCCCTCCAGTTCACCCG TTCTTCCCCAA AACTCCATCAACAGGGTCACCCTCCG GACGCGCTCGCCTCCGTCGCCA CTCCCTCGG GTGCCCCTCCCCGA CG GCCCGCTTCTTCCGGTCCCAGATGCAGACCATCATCTCCCG GCCTGCAA GAGCTCGG GTCAAGG CGTCCCCAG CG CG TGCGTCTCCCTCCTCCTCTGGCTGGAGTGAGCGCTACGAGACGGTGTACAGGCG CA CCGGGGTTCCAGTCCGGGACCAAG CGGTG TCAACCTTGAAAACCCTTTCCCCAACAAGTTTGCCGGAGAATCTCTTCCGGGGACAAAGTGGGGCGTTCGTGCAGGTCCCCTTCT ] [+] EMBL CF296063 [ ACCTCCCTCGGCGTGCCCCTCCCCGACCGCGCCCGCTTCTTCCGCTCCCAGATGCAGACCATCATCTCCCGCGCCTGCAACGAGCTCGGCGTCAAGGCCGTCCCCAGCCGCCGCTGCGTTTTCCTCCTCCTCTGGCTGGAT GAGCGCTACGAGACGGTGTACAGCCGCCACCCGGGCTTCCAGTCCGGCACCAAGCCGCTGCTCACCCTCGACAACCCCTTCCCC ACCAGCTTGCCGGAGAATCTCTT CGGCGAC AAGT GGGCGTTCGTGCAGCTCCCCTTCTCCG ] [-] EMBL CB645135 [ CGAGACGGTGTACAGCCGCCACCCGGGCTTCCAGTCCGGCACCAAGCCGCTGCTCACCCTCGACAACCCCTTCCCC ACCAGCTTGCCGGAGAATCTCTT CGGCGAC AAGT GGGCGTTCGTGCAGCTCCCCTTCTCCGCTGTGAGGGAGGAGGTGGAGTCGCTGGAGAGGAGGTATGCGTTTGGGGCGGGGCTCGACTTGGACCTCCTGGGGTTCGAGCTCGATGAGAACACCTTGATACCTGGGGTTGCCGTGGAATCTTCGCGAGCCAAGCCTCTAGCTGCTTGGATGAACGGTCTAGAGATCTGCTCAATGGAGGTTGACACGGGCAGGGCGAACCTGATCCTATCGGCGGGGGTCTCGACCAGGTACGTCTACGCCGGGTACCAGAAGAGCGCCGCGACGACGCAGGAAGCCGAGGCCTGGGAGGCGGCGAAGAAGGCCTGTGGCGGCCTGCACTTCCTGGCCATCCAGGAGAACCTCAACTCCGACGGGTGCGTTGGTTTCTGGCTCCTGCTGGACCTTCCCCCGCCGCCTGTATGATTGATCCTGCAGTCCGGAGAGTAGCATCTAGCAGCGTGTGTTTCCATCAAAGATCACTGTGTAGTATGTGTAGCTCCAGTAACAAAATTTTCAATACAAGATCCCTTCCATCTGTACTACACACTGGTGTACTAAGGAGGAAAAAAAGAAAAGAAGAGGAGATAAGNGGCTCTG ] [-] EMBL CB682023 [ tTTGCCGGAGAATCTCTT CGGCGAC AAGT GGGCGTTCGTGCAGCTCCCCTTCTCCGCTGTGAGGGAGGAGGTGGAGTCGCTGGAGAGGAGGTATGCGTTTGGGGCGGGGCTCGACTTGGACCTCCTGGGGTTCGAGCTCGATGAGAACACCTTGATACCTGGGGTTGCCGTGGAATCTTCGCGAGCCAAGCCTCTAGCTGCTTGGATGAACGGTCTAGAGATCTGCTCAATGGAGGTTGACACGGGCAGGGCGAACCTGATCCTATCGGCGGGGGTCTCGACCAGGTACGTTTACGCCGGGTACCAGAAGAGCGCCGCGACGACGCAGGAAGCCGAGGCCTGGGAGGCGGCGAAGAAGGCCTGTGGCGGCCTGCACTTCCTGGCCATCCAGGAGAACCTCAACTCCGACGGGTGCGTTGGTTTTTGGCTCCTGCTGGACCTTCCCCCGCCGCCTGTATGATTGATCCTGCAGTCCGGAGAGTAGCATCTAGCAGCGTGTGTTTCCATCAAAGATCACTGTGTAGTATGTGTAGCTCCAGTAACAAAATTTTCAATACAAGATCCCTTCCATCTGTACTACACACTGGTGTACTAAGGAGGAAAAAAAGAAAAGAAGAGGAGATAAG GGCTCTGTGTGTTTTCATGTGAGATATGAGTTTCTTAAGAAAAAAGGAAGGAATA] consensusID : consensus_11310#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 330 fasta sequence [GACCTGCACCTCTCCANCCCAGCTGCGCCACCTTCTCCGCGCGCGCGCTTCCGCCCGCCGCCCATTGCTGCCGCGACNACNCANGAAGCCNAAGCCTGGGANGCGGCCAAANANGCCTGTGGCGGCCTGCACTTCCTGGCCATCCAGGAGAACCTCAACTCCGACGGGTGCGTTGGTTTCTGGCTCCTGCTGGACCTTCCCCCGCCGCCTGTATGATTGATCCTGCAGTCCGGAAANTANCATCTANCANCGTGTGTNTCCANCNAAGATCACTGTGTANTATGTGTAGCTCCNGTAACNAAATTTTCAATACAAGATCCCTTCCNTCTG] [+] EMBL BE228747 [GACCTGCACCTCTCCANCCCAGCTGCGCCACCTTCTCCGCGCGCGCGCTTCCGCCCGCCGCCCATTGCTGCCGCGACNACNCANGAAGCCNAAGCCTGGGANGCGGCCAAANANGCCTGTGGCGGCCTGCACTTCCTGGCCATCCAGGAGAACCTCAACTCCGACGGGTGCGTTGGTTTCTGGCTCCTGCTGGACCTTCCCCCGCCGCCTGTATGATTGATCCTGCAGTCCGGAAANTANCATCTANCANCGTGTGTNTCCANCNAAGATCACTGTGTANTATGTGTAGCTCCNGTAACNAAATTTTCAATACAAGATCCCTTCCNTCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11310#0 AGCCCGCGGCGACACCACCACCCACCAGCGTTAGCTTCTGCGTGTGGCCGTGGGCGCGCG 60 consensus_11310#1 ------------------------------------------------------------ consensus_11310#0 CTCCGCCCGCGCCATGACGACCGCCACCGCCATCGTCGCCGGCCACGGCCTCGCGCTGCG 120 consensus_11310#1 ------------------------------------------------------------ consensus_11310#0 CCGGAGCCTGCACCTCTCCAAGCCCAGCTGCGCCACCTTCTCCGCGCGCGCGCTTCCGCC 180 consensus_11310#1 ------------------------------------------------------------ consensus_11310#0 CGCCGCCCATTGCTGCCGCACCGTCGTCGCCGCGGCCGCGCCGTCGTCGCGGACATGCCG 240 consensus_11310#1 ------------------------------------------------------------ consensus_11310#0 GTGCCGGTCCGTCTCCTCCGAGAGCTCCACCGCCGCCGCGGCCGACACCGCCGACGACGA 300 consensus_11310#1 ------------------------------------------------------------ consensus_11310#0 GGAGGAGGTGACCAAGAGCGACTCGGAGGAGGAGGAGATGGACCCGCTGGCGGAGGTGTG 360 consensus_11310#1 ------------------------------------------------------------ consensus_11310#0 CTACCTGGACCCGGAGGCGGACGCGGAGGGGATCCGGGAGTGGGAGCTGGACTTCTGCTC 420 consensus_11310#1 ------------------------------------------------------------ consensus_11310#0 GCGCCCAATCCTGGACGCGCGCGGGAAGAAGGTGTGGGAGCTGGTGGTGTGCGACGCGAC 480 consensus_11310#1 ------------------------------------------------------------ consensus_11310#0 GCTGTCCCTCCAGTTCACCCGCTTCTTCCCCAACACCTCCATCAACAGCGTCACCCTCCG 540 consensus_11310#1 ------------------------------------------------------------ consensus_11310#0 CGACGCGCTCGCCTCCGTCGCCACCTCCCTCGGCGTGCCCCTCCCCGACCGCGCCCGCTT 600 consensus_11310#1 ------------------------------------------------------------ consensus_11310#0 CTTCCGCTCCCAGATGCAGACCATCATCTCCCGCGCCTGCAACGAGCTCGGCGTCAAGGC 660 consensus_11310#1 ------------------------------------------------------------ consensus_11310#0 CGTCCCCAGCCGCCGCTGCGTCTCCCTCCTCCTCTGGCTGGAGGAGCGCTACGAGACGGT 720 consensus_11310#1 ------------------------------------------------------------ consensus_11310#0 GTACAGCCGCCACCCGGGCTTCCAGTCCGGCACCAAGCCGCTGCTCACCCTCGACAACCC 780 consensus_11310#1 ------------------------------------------------------------ consensus_11310#0 CTTCCCCACCAGCTTGCCGGAGAATCTCTTCGGCGACAAGTGGGCGTTCGTGCAGCTCCC 840 consensus_11310#1 ------------------------------------------------------------ consensus_11310#0 CTTCTCCGCTGTGAGGGAGGAGGTGGAGTCGCTGGAGAGGAGGTATGCGTTTGGGGCGGG 900 consensus_11310#1 ------------------------------------------------------------ consensus_11310#0 GCTCGACTTGGACCTCCTGGGGTTCGAGCTCGATGAGAACACCTTGATACCTGGGGTTGC 960 consensus_11310#1 ------------------------------------------------------------ consensus_11310#0 CGTGGAATCTTCGCGAGCCAAGCCTCTAGCTGCTTGGATGAACGGTCTAGAGATCTGCTC 1020 consensus_11310#1 ------------------------------------------------------------ consensus_11310#0 AATGGAGGTTGACACGGGCAGGGCGAACCTGATCCTATCGGCGGGGGTCTCGAC-CAGGT 1079 consensus_11310#1 ----------------GACCTGCACCTCTCCANCCCAGCTGCGCCACCTTCTCCGCGCGC 44 * * * * * ** * * *** ** * * * consensus_11310#0 ACGTCTACGCCGGGTACCAGAAGAGCGCCGCGACGACGCAGGAAGCCGAGGCCTGGGAGG 1139 consensus_11310#1 GCGCTTCCGCCCGCCGCCC-ATTGCTGCCGCGACNACNCANGAAGCCNAAGCCTGGGANG 103 ** * **** * ** * ******** ** ** ****** * ******** * consensus_11310#0 CGGCGAAGAAGGCCTGTGGCGGCCTGCACTTCCTGGCCATCCAGGAGAACCTCAACTCCG 1199 consensus_11310#1 CGGCCAAANANGCCTGTGGCGGCCTGCACTTCCTGGCCATCCAGGAGAACCTCAACTCCG 163 **** ** * ************************************************* consensus_11310#0 ACGGGTGCGTTGGTTTCTGGCTCCTGCTGGACCTTCCCCCGCCGCCTGTATGATTGATCC 1259 consensus_11310#1 ACGGGTGCGTTGGTTTCTGGCTCCTGCTGGACCTTCCCCCGCCGCCTGTATGATTGATCC 223 ************************************************************ consensus_11310#0 TGCAGTCCGGAGAGTAGCATCTAGCAGCGTGTGTTTCCATCAAAGATCACTGTGTAGTAT 1319 consensus_11310#1 TGCAGTCCGGAAANTANCATCTANCANCGTGTGTNTCCANCNAAGATCACTGTGTANTAT 283 *********** * ** ****** ** ******* **** * ************** *** consensus_11310#0 GTGTAGCTCCAGTAACAAAATTTTCAATACAAGATCCCTTCCATCTGTACTACACACTGG 1379 consensus_11310#1 GTGTAGCTCCNGTAACNAAATTTTCAATACAAGATCCCTTCCNTCTG------------- 330 ********** ***** ************************* **** consensus_11310#0 TGTACTAAGGAGGAAAAAAAGAAAAGAAGAGGAGATAAGGGCTCTGTGTGTTTTCATGTG 1439 consensus_11310#1 ------------------------------------------------------------ consensus_11310#0 AGATATGAGTTTCTTAAGAAAAAAGGAAGGAATA 1473 consensus_11310#1 ---------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||