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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11310#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1473 fasta sequence
[AGCCCGCGGCGACACCACCACCCACCAGCGTTAGCTTCTGCGTGTGGCCGTGGGCGCGCGCTCCGCCCGCGCCATGACGACCGCCACCGCCATCGTCGCCGGCCACGGCCTCGCGCTGCGCCGGAGCCTGCACCTCTCCAAGCCCAGCTGCGCCACCTTCTCCGCGCGCGCGCTTCCGCCCGCCGCCCATTGCTGCCGCACCGTCGTCGCCGCGGCCGCGCCGTCGTCGCGGACATGCCGGTGCCGGTCCGTCTCCTCCGAGAGCTCCACCGCCGCCGCGGCCGACACCGCCGACGACGAGGAGGAGGTGACCAAGAGCGACTCGGAGGAGGAGGAGATGGACCCGCTGGCGGAGGTGTGCTACCTGGACCCGGAGGCGGACGCGGAGGGGATCCGGGAGTGGGAGCTGGACTTCTGCTCGCGCCCAATCCTGGACGCGCGCGGGAAGAAGGTGTGGGAGCTGGTGGTGTGCGACGCGACGCTGTCCCTCCAGTTCACCCGCTTCTTCCCCAACACCTCCATCAACAGCGTCACCCTCCGCGACGCGCTCGCCTCCGTCGCCACCTCCCTCGGCGTGCCCCTCCCCGACCGCGCCCGCTTCTTCCGCTCCCAGATGCAGACCATCATCTCCCGCGCCTGCAACGAGCTCGGCGTCAAGGCCGTCCCCAGCCGCCGCTGCGTCTCCCTCCTCCTCTGGCTGGAG-GAGCGCTACGAGACGGTGTACAGCCGCCACCCGGGCTTCCAGTCCGGCACCAAGCCGCTGCTCACCCTCGACAACCCCTTCCCC-ACCAGCTTGCCGGAGAATCTCTT-CGGCGAC-AAGT-GGGCGTTCGTGCAGCTCCCCTTCTCCGCTGTGAGGGAGGAGGTGGAGTCGCTGGAGAGGAGGTATGCGTTTGGGGCGGGGCTCGACTTGGACCTCCTGGGGTTCGAGCTCGATGAGAACACCTTGATACCTGGGGTTGCCGTGGAATCTTCGCGAGCCAAGCCTCTAGCTGCTTGGATGAACGGTCTAGAGATCTGCTCAATGGAGGTTGACACGGGCAGGGCGAACCTGATCCTATCGGCGGGGGTCTCGACCAGGTACGTCTACGCCGGGTACCAGAAGAGCGCCGCGACGACGCAGGAAGCCGAGGCCTGGGAGGCGGCGAAGAAGGCCTGTGGCGGCCTGCACTTCCTGGCCATCCAGGAGAACCTCAACTCCGACGGGTGCGTTGGTTTCTGGCTCCTGCTGGACCTTCCCCCGCCGCCTGTATGATTGATCCTGCAGTCCGGAGAGTAGCATCTAGCAGCGTGTGTTTCCATCAAAGATCACTGTGTAGTATGTGTAGCTCCAGTAACAAAATTTTCAATACAAGATCCCTTCCATCTGTACTACACACTGGTGTACTAAGGAGGAAAAAAAGAAAAGAAGAGGAGATAAG-GGCTCTGTGTGTTTTCATGTGAGATATGAGTTTCTTAAGAAAAAAGGAAGGAATA]
[+] EMBL AK099736 [AGCCCGCGGCGACACCACCACCCACCAGCGTTAGCTTCTGCGTGTGGCCGTGGGCGCGCGCTCCGCCCGCGCCATGACGACCGCCACCGCCATCGTCGCCGGCCACGGCCTCGCGCTGCGCCGGAGCCTGCACCTCTCCAAGCCCAGCTGCGCCACCTTCTCCGCGCGCGCGCTTCCGCCCGCCGCCCATTGCTGCCGCACCGTCGTCGCCGCGGCCGCGCCGTCGTCGCGGACATGCCGGTGCCGGTCCGTCTCCTCCGAGAGCTCCACCGCCGCCGCGGCCGACACCGCCGACGACGAGGAGGAGGTGACCAAGAGCGACTCGGAGGAGGAGGAGATGGACCCGCTGGCGGAGGTGTGCTACCTGGACCCGGAGGCGGACGCGGAGGGGATCCGGGAGTGGGAGCTGGACTTCTGCTCGCGCCCAATCCTGGACGCGCGCGGGAAGAAGGTGTGGGAGCTGGTGGTGTGCGACGCGACGCTGTCCCTCCAGTTCACCCGCTTCTTCCCCAACACCTCCATCAACAGCGTCACCCTCCGCGACGCGCTCGCCTCCGTCGCCACCTCCCTCGGCGTGCCCCTCCCCGACCGCGCCCGCTTCTTCCGCTCCCAGATGCAGACCATCATCTCCCGCGCCTGCAACGAGCTCGGCGTCAAGGCCGTCCCCAGCCGCCGCTGCGTCTCCCTCCTCCTCTGGCTGGAG GAGCGCTACGAGACGGTGTACAGCCGCCACCCGGGCTTCCAGTCCGGCACCAAGCCGCTGCTCACCCTCGACAACCCCTTCCCC ACCAGCTTGCCGGAGAATCTCTT CGGCGAC AAGT GGGCGTTCGTGCAGCTCCCCTTCTCCGCTGTGAGGGAGGAGGTGGAGTCGCTGGAGAGGAGGTATGCGTTTGGGGCGGGGCTCGACTTGGACCTCCTGGGGTTCGAGCTCGATGAGAACACCTTGATACCTGGGGTTGCCGTGGAATCTTCGCGAGCCAAGCCTCTAGCTGCTTGGATGAACGGTCTAGAGATCTGCTCAATGGAGGTTGACACGGGCAGGGCGAACCTGATCCTATCGGCGGGGGTCTCGACCAGGTACGTCTACGCCGGGTACCAGAAGAGCGCCGCGACGACGCAGGAAGCCGAGGCCTGGGAGGCGGCGAAGAAGGCCTGTGGCGGCCTGCACTTCCTGGCCATCCAGGAGAACCTCAACTCCGACGGGTGCGTTGGTTTCTGGCTCCTGCTGGACCTTCCCCCGCCGCCTGTATGATTGATCCTGCAGTCCGGAGAGTAGCATCTAGCAGCGTGTGTTTCCATCAAAGATCACTGTGTAGTATGTGTAGCTCCAGTAACAAAATTTTCAATACAAGATCCCTTCCATCTGTACTACACACTGGTGTACTAAGGAGGAAAAAAAGAAAAGAAGAGGAGATAAG GGCTCT ]
[+] EMBL CB645134 [ ACCACCCACCAACGTTAGCTTCTGCGTGTGGCCGTGGGCGCGCGCTCCGCCCGCGCCATGACGACCGCCACCGCCATCGTCGCCGGCCACGGCCTCGCGCTGCGCCGGAGCCTGCACCTCTCCAAGCCCAGCTGCGCCACCTTCTCCGCGCGCGCGCTTCCGCCCGCCGCCCATTGCTGCCGCACCGTCGTCGCCGCGGCCGCGCCGTCGTCGCGGACATGCCGGTGCCGGTCCGTCTCCTCCGAGAGCTCCACCGCCGCCGCGGCCGACACCGCCGACGACGAGGAGGAGGTGACCAAGAGCGACTCGGAGGAGGAGGAGATGGACCCGCTGGCGGAGGTGTGCTACCTGGACCCGGAGGCGGACGCGGAGGGGATCCGGGAGTGGGAGCTGGACTTCTGCTCGCGCCCAATCCTGGACGCGCGCGGGAAGAAGGTGTGGGAGCTGGTGGTGTGCGACGCGACGCTGTCCCTCCAGTTCACCCGCTTCTTCCCCAACACCTCCATCAACAGCGTCACCCTCCGCGACGCGCTCGCCTCCGTCGCCACCTCCCTCGGCGTGCCCCTCCCCGACCGCGCCCGCTTCTTCCGCTCCCAGATGCAGACCATCATCTCCCGCGCCTGCAACGAGCTCGGCGTCAAGGCCGTCCCCAGCCGCCGCTGCGTCTCCCTCCTCCTCTGGCTGGAG GAGCGCTACGAGACGGTGTACAGCCGCCACCCGGGCTTCCAGTCCGGCACCAAGCCGC ]
[+] EMBL CB682022 [ GCTTCCGCGTGTGGCCGTGGGCGCGCGCTCCGCCCGCGCCATGACGACCGCCACCGCCATCGTCGCCGGCCACGGCCTCGCGCTGCGCCGGAGCCTGCACCTCTCCAAGCCCAGCTGCGCCACCTTCTCCGCGCGCGCGCTTCCGCCCGCCGCCCATTGCTGCCGCACCGTCGTCGCCGCGGCCGCGCCGTCGTCGCGGACATGCCGGTGCCGGTCCGTCTCCTCCGAGAGCTCCACCGCCGCCGCGGCCGACACCGCCGACGACGAGGAGGAGGTGACCAAGAGCGACTCGGAGGAGGAGGAGATGGACCCGCTGGCGGAGGTGTGCTACCTGGACCCGGAGGCGGACGCGGAGGGGATCCGGGAGTGGGAGCTGGACTTCTGCTCGCGCCCAATCCTGGACGCGCGCGGGAAGAAGGTGTGGGAGCTGGTGGTGTGCGACGCGACGCTGTCCCTCCAGTTCACCCGCTTCTTCCCCAACACCTCCATCAACAGCGTCACCCTCCGCGACGCGCTCGCCTCCGTCGCCACCTCCCTCGGCGTGCCCCTCCCCGACCGCGCCCGCTTCTTCCGCTCCCAGATGCAGACCATCATCTCCCGCGCCTGCAACGAGCTCGGCGTCAAGGACGTCCCCAGCCGCCGCTGCGTCTCCCTCCTCCTCTGGATGGAG GAG ]
[-] EMBL BI809073 [ TCGCGGACATGCCGGTGCCGGTCCGTCTCCTCCGAGAGCTCCACCGCCGCCGCGG CGACACCGCCGACGACGAGGAGGAGGAGACCAAGAGCGACTCGGAGGAGGAGGAGATGGACCCGCTGGCGGAGGTGTGCTACCTGGACCCGGAGGCGGACGCGGAGGGGATCCGGGAGTGGGAGCTGGACTTCTGCTCGCGCCCAATCCTGGACGCGCGCGGGAAGAAGGTGTGGGAGCTGGTGGTGTGCGACGCGACGCTGTCCCTCCAGTTCACCCG TTCTTCCCCAA AACTCCATCAACAGGGTCACCCTCCG GACGCGCTCGCCTCCGTCGCCA CTCCCTCGG GTGCCCCTCCCCGA CG GCCCGCTTCTTCCGGTCCCAGATGCAGACCATCATCTCCCG GCCTGCAA GAGCTCGG GTCAAGG CGTCCCCAG CG CG TGCGTCTCCCTCCTCCTCTGGCTGGAGTGAGCGCTACGAGACGGTGTACAGGCG CA CCGGGGTTCCAGTCCGGGACCAAG CGGTG TCAACCTTGAAAACCCTTTCCCCAACAAGTTTGCCGGAGAATCTCTTCCGGGGACAAAGTGGGGCGTTCGTGCAGGTCCCCTTCT ]
[+] EMBL CF296063 [ ACCTCCCTCGGCGTGCCCCTCCCCGACCGCGCCCGCTTCTTCCGCTCCCAGATGCAGACCATCATCTCCCGCGCCTGCAACGAGCTCGGCGTCAAGGCCGTCCCCAGCCGCCGCTGCGTTTTCCTCCTCCTCTGGCTGGAT GAGCGCTACGAGACGGTGTACAGCCGCCACCCGGGCTTCCAGTCCGGCACCAAGCCGCTGCTCACCCTCGACAACCCCTTCCCC ACCAGCTTGCCGGAGAATCTCTT CGGCGAC AAGT GGGCGTTCGTGCAGCTCCCCTTCTCCG ]
[-] EMBL CB645135 [ CGAGACGGTGTACAGCCGCCACCCGGGCTTCCAGTCCGGCACCAAGCCGCTGCTCACCCTCGACAACCCCTTCCCC ACCAGCTTGCCGGAGAATCTCTT CGGCGAC AAGT GGGCGTTCGTGCAGCTCCCCTTCTCCGCTGTGAGGGAGGAGGTGGAGTCGCTGGAGAGGAGGTATGCGTTTGGGGCGGGGCTCGACTTGGACCTCCTGGGGTTCGAGCTCGATGAGAACACCTTGATACCTGGGGTTGCCGTGGAATCTTCGCGAGCCAAGCCTCTAGCTGCTTGGATGAACGGTCTAGAGATCTGCTCAATGGAGGTTGACACGGGCAGGGCGAACCTGATCCTATCGGCGGGGGTCTCGACCAGGTACGTCTACGCCGGGTACCAGAAGAGCGCCGCGACGACGCAGGAAGCCGAGGCCTGGGAGGCGGCGAAGAAGGCCTGTGGCGGCCTGCACTTCCTGGCCATCCAGGAGAACCTCAACTCCGACGGGTGCGTTGGTTTCTGGCTCCTGCTGGACCTTCCCCCGCCGCCTGTATGATTGATCCTGCAGTCCGGAGAGTAGCATCTAGCAGCGTGTGTTTCCATCAAAGATCACTGTGTAGTATGTGTAGCTCCAGTAACAAAATTTTCAATACAAGATCCCTTCCATCTGTACTACACACTGGTGTACTAAGGAGGAAAAAAAGAAAAGAAGAGGAGATAAGNGGCTCTG ]
[-] EMBL CB682023 [ tTTGCCGGAGAATCTCTT CGGCGAC AAGT GGGCGTTCGTGCAGCTCCCCTTCTCCGCTGTGAGGGAGGAGGTGGAGTCGCTGGAGAGGAGGTATGCGTTTGGGGCGGGGCTCGACTTGGACCTCCTGGGGTTCGAGCTCGATGAGAACACCTTGATACCTGGGGTTGCCGTGGAATCTTCGCGAGCCAAGCCTCTAGCTGCTTGGATGAACGGTCTAGAGATCTGCTCAATGGAGGTTGACACGGGCAGGGCGAACCTGATCCTATCGGCGGGGGTCTCGACCAGGTACGTTTACGCCGGGTACCAGAAGAGCGCCGCGACGACGCAGGAAGCCGAGGCCTGGGAGGCGGCGAAGAAGGCCTGTGGCGGCCTGCACTTCCTGGCCATCCAGGAGAACCTCAACTCCGACGGGTGCGTTGGTTTTTGGCTCCTGCTGGACCTTCCCCCGCCGCCTGTATGATTGATCCTGCAGTCCGGAGAGTAGCATCTAGCAGCGTGTGTTTCCATCAAAGATCACTGTGTAGTATGTGTAGCTCCAGTAACAAAATTTTCAATACAAGATCCCTTCCATCTGTACTACACACTGGTGTACTAAGGAGGAAAAAAAGAAAAGAAGAGGAGATAAG GGCTCTGTGTGTTTTCATGTGAGATATGAGTTTCTTAAGAAAAAAGGAAGGAATA]
consensusID : consensus_11310#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 330 fasta sequence
[GACCTGCACCTCTCCANCCCAGCTGCGCCACCTTCTCCGCGCGCGCGCTTCCGCCCGCCGCCCATTGCTGCCGCGACNACNCANGAAGCCNAAGCCTGGGANGCGGCCAAANANGCCTGTGGCGGCCTGCACTTCCTGGCCATCCAGGAGAACCTCAACTCCGACGGGTGCGTTGGTTTCTGGCTCCTGCTGGACCTTCCCCCGCCGCCTGTATGATTGATCCTGCAGTCCGGAAANTANCATCTANCANCGTGTGTNTCCANCNAAGATCACTGTGTANTATGTGTAGCTCCNGTAACNAAATTTTCAATACAAGATCCCTTCCNTCTG]
[+] EMBL BE228747 [GACCTGCACCTCTCCANCCCAGCTGCGCCACCTTCTCCGCGCGCGCGCTTCCGCCCGCCGCCCATTGCTGCCGCGACNACNCANGAAGCCNAAGCCTGGGANGCGGCCAAANANGCCTGTGGCGGCCTGCACTTCCTGGCCATCCAGGAGAACCTCAACTCCGACGGGTGCGTTGGTTTCTGGCTCCTGCTGGACCTTCCCCCGCCGCCTGTATGATTGATCCTGCAGTCCGGAAANTANCATCTANCANCGTGTGTNTCCANCNAAGATCACTGTGTANTATGTGTAGCTCCNGTAACNAAATTTTCAATACAAGATCCCTTCCNTCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11310#0 AGCCCGCGGCGACACCACCACCCACCAGCGTTAGCTTCTGCGTGTGGCCGTGGGCGCGCG 60
consensus_11310#1 ------------------------------------------------------------
consensus_11310#0 CTCCGCCCGCGCCATGACGACCGCCACCGCCATCGTCGCCGGCCACGGCCTCGCGCTGCG 120
consensus_11310#1 ------------------------------------------------------------
consensus_11310#0 CCGGAGCCTGCACCTCTCCAAGCCCAGCTGCGCCACCTTCTCCGCGCGCGCGCTTCCGCC 180
consensus_11310#1 ------------------------------------------------------------
consensus_11310#0 CGCCGCCCATTGCTGCCGCACCGTCGTCGCCGCGGCCGCGCCGTCGTCGCGGACATGCCG 240
consensus_11310#1 ------------------------------------------------------------
consensus_11310#0 GTGCCGGTCCGTCTCCTCCGAGAGCTCCACCGCCGCCGCGGCCGACACCGCCGACGACGA 300
consensus_11310#1 ------------------------------------------------------------
consensus_11310#0 GGAGGAGGTGACCAAGAGCGACTCGGAGGAGGAGGAGATGGACCCGCTGGCGGAGGTGTG 360
consensus_11310#1 ------------------------------------------------------------
consensus_11310#0 CTACCTGGACCCGGAGGCGGACGCGGAGGGGATCCGGGAGTGGGAGCTGGACTTCTGCTC 420
consensus_11310#1 ------------------------------------------------------------
consensus_11310#0 GCGCCCAATCCTGGACGCGCGCGGGAAGAAGGTGTGGGAGCTGGTGGTGTGCGACGCGAC 480
consensus_11310#1 ------------------------------------------------------------
consensus_11310#0 GCTGTCCCTCCAGTTCACCCGCTTCTTCCCCAACACCTCCATCAACAGCGTCACCCTCCG 540
consensus_11310#1 ------------------------------------------------------------
consensus_11310#0 CGACGCGCTCGCCTCCGTCGCCACCTCCCTCGGCGTGCCCCTCCCCGACCGCGCCCGCTT 600
consensus_11310#1 ------------------------------------------------------------
consensus_11310#0 CTTCCGCTCCCAGATGCAGACCATCATCTCCCGCGCCTGCAACGAGCTCGGCGTCAAGGC 660
consensus_11310#1 ------------------------------------------------------------
consensus_11310#0 CGTCCCCAGCCGCCGCTGCGTCTCCCTCCTCCTCTGGCTGGAGGAGCGCTACGAGACGGT 720
consensus_11310#1 ------------------------------------------------------------
consensus_11310#0 GTACAGCCGCCACCCGGGCTTCCAGTCCGGCACCAAGCCGCTGCTCACCCTCGACAACCC 780
consensus_11310#1 ------------------------------------------------------------
consensus_11310#0 CTTCCCCACCAGCTTGCCGGAGAATCTCTTCGGCGACAAGTGGGCGTTCGTGCAGCTCCC 840
consensus_11310#1 ------------------------------------------------------------
consensus_11310#0 CTTCTCCGCTGTGAGGGAGGAGGTGGAGTCGCTGGAGAGGAGGTATGCGTTTGGGGCGGG 900
consensus_11310#1 ------------------------------------------------------------
consensus_11310#0 GCTCGACTTGGACCTCCTGGGGTTCGAGCTCGATGAGAACACCTTGATACCTGGGGTTGC 960
consensus_11310#1 ------------------------------------------------------------
consensus_11310#0 CGTGGAATCTTCGCGAGCCAAGCCTCTAGCTGCTTGGATGAACGGTCTAGAGATCTGCTC 1020
consensus_11310#1 ------------------------------------------------------------
consensus_11310#0 AATGGAGGTTGACACGGGCAGGGCGAACCTGATCCTATCGGCGGGGGTCTCGAC-CAGGT 1079
consensus_11310#1 ----------------GACCTGCACCTCTCCANCCCAGCTGCGCCACCTTCTCCGCGCGC 44
* * * * * ** * * *** ** * * *
consensus_11310#0 ACGTCTACGCCGGGTACCAGAAGAGCGCCGCGACGACGCAGGAAGCCGAGGCCTGGGAGG 1139
consensus_11310#1 GCGCTTCCGCCCGCCGCCC-ATTGCTGCCGCGACNACNCANGAAGCCNAAGCCTGGGANG 103
** * **** * ** * ******** ** ** ****** * ******** *
consensus_11310#0 CGGCGAAGAAGGCCTGTGGCGGCCTGCACTTCCTGGCCATCCAGGAGAACCTCAACTCCG 1199
consensus_11310#1 CGGCCAAANANGCCTGTGGCGGCCTGCACTTCCTGGCCATCCAGGAGAACCTCAACTCCG 163
**** ** * *************************************************
consensus_11310#0 ACGGGTGCGTTGGTTTCTGGCTCCTGCTGGACCTTCCCCCGCCGCCTGTATGATTGATCC 1259
consensus_11310#1 ACGGGTGCGTTGGTTTCTGGCTCCTGCTGGACCTTCCCCCGCCGCCTGTATGATTGATCC 223
************************************************************
consensus_11310#0 TGCAGTCCGGAGAGTAGCATCTAGCAGCGTGTGTTTCCATCAAAGATCACTGTGTAGTAT 1319
consensus_11310#1 TGCAGTCCGGAAANTANCATCTANCANCGTGTGTNTCCANCNAAGATCACTGTGTANTAT 283
*********** * ** ****** ** ******* **** * ************** ***
consensus_11310#0 GTGTAGCTCCAGTAACAAAATTTTCAATACAAGATCCCTTCCATCTGTACTACACACTGG 1379
consensus_11310#1 GTGTAGCTCCNGTAACNAAATTTTCAATACAAGATCCCTTCCNTCTG------------- 330
********** ***** ************************* ****
consensus_11310#0 TGTACTAAGGAGGAAAAAAAGAAAAGAAGAGGAGATAAGGGCTCTGTGTGTTTTCATGTG 1439
consensus_11310#1 ------------------------------------------------------------
consensus_11310#0 AGATATGAGTTTCTTAAGAAAAAAGGAAGGAATA 1473
consensus_11310#1 ----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||