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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11326#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1734 fasta sequence
[AAAGTGACCGACTGAGAGGAGGAGGGTTCAGGAAGGAAGGAGAGGGAGAAGAAGAGGCAGCGTGCGCACTCGGCTTCGTCAGAGATGGGGATCTTCTGGAGCAAGGCGGAGCCGCCGCCGCCGATGGTGCTCGTCCCGCCGCTCTTCGACTACCCACCCATCGCCGCCCGCACCAGGATGTCGGTGCCAGCGTATGAGCTAATGTTTGGGAAGCTCTCGCTGCAGAATCTGTTTGAGGACTACTTTGATCATGCGGGGAATATGACCTCAAGGGTCATGCTGAAGCCACTGGAGGATCCTCATGTTGATTTGATTGCCACTGTGTCTGCAGCTGCTGATAAAATAGACGGAACACAAGTAAAGGGAGATGCTCTATTTCGCTGGCAGAAAGATTTAGATGATCCCCATACCTTTGTGGACCTTCTTGTGTCAACTTCAAACCCAATGTTGCAGGTTAGGTCATGTGCTTACCATCCTAAGTACCGTGTTGGTGCGTTTGGGACATTCCCTTTACTAATGGGAAACAGGGTGCGTTCTGAGGATTATGGTGTCATGGGAGTAAGATACGGTTCAGAGAATCTATCATTTGGGTCTTCCTTTGTGCCATTTCCTGGATCTGCTGAACTACCCTCTGGAGCATGGTTGGTCGGGAGAAAAGGGAGCTTAAGTGCAGGAGTGCAATACAAGCCACTTAGTGGAAACAAACATCTTATGCCATATACAGATTGGAAGAACTGGAATTGTGCAATCAGTTATGGTGTAGGATTAACAAGCCCACTCAGTCCTTCCTTCATTTTTTCTCTAGAGCTTGCCAGAAGTACAGAGTTCATTGCATCGTTCTATCAACACATGGTTGTTCAAAGAAGGGTTAAAAACCCTTTTGAAGATGATCAGATTGTTGGAATCACAAACTACATTGATTTTGGGCTTGAATTGGCTACAAGGATTGATAAAGATAAACCATCAGAGAGTGCCAACAATTCCTTGTTTCAGTTTGCAGCAAGTTGGCAAGCTAATAAGAACTTCCTATTCAAGGGAAAGCTAGGTCCTTCCAAGTCTTCTGTAGCTTTGGCATTCAAGTCATGGTGGAGACCAT-CCTTCACATTTAGTGTCACAGCTGTGAACGATCATTTGAAGGGGACAAGATCATATGGATTTGGAATTCGTGTTGAGGATCTTAGACAGCCAAGTTACCAAAGGGCTGATCCAAACTATGTAATGCTAACACCAAGCAAGGAGCACTTGGCACCAGGTGTTTTGCGAGAGTACGGGAAGCGG-CCCATGTTCCAGGCAGAGGTTGATTCGGGCAACTATGAT-CA-TTTACCTACAGAG-TTG-AAGCCTAT-CAG-CAAGATATTCTA-GCAGTGG-CCGTTTTT-GGTCAATCCTTTGCTCAAAAGAACTTCACCCGGTACATCT-GAAAGG-CATCATCAAACGTAGGTCTGTTTCAACTTTGCAAGACAGTTGGTCCATTATGATGTACAAGTTTTGTCGTGAAGAATGTCTAGGTTGAAACTTAGTGATATCTCACCTTGGAAGTGTAGCCATCAACTCCGTAGATTATAGAAGAATGTGGGCAATCAAGTTGAAGTTATTATTGAGCGTGTTGAATTAATTAATAGACCATATGGTTCGGTCTACTCTTCTGCACTTCACAAACACGGACCAGAACTATCCAAGTCTATTTGAGGTACGTAATCAATTTGCATTTCATTTTTTGGACAAAAAAAAAAAAAAAAA]
[+] EMBL CF315457 [AAAGTGACCGACTGAGAGGAGGAGGGTTCAGGAAGGAAGGAGAGGGAGAAGAAGAGGCAGCGTGCGCACTCGGCTTCGTCAGAGATGGGGATCTTCTGGAGCAAGGCGGAGCCGCCGCCGCCGATGGTGCTCGTCCCGCCGCTCTTCGACTACCCACCCATCGCCGCCCGCACCAGGATGTCGGTGCCAGCGTATGAGCTAATGTTTGGGAAGCTCTCGCTGCAGAATCTGTTTGAGGACTACTTTGATCATGCGGGGGATATGACCTCAAGGGTCATGCTGAAGCCACTGGAGGATCCTCATGTTGATTTGATTGCCACTGTGTCTGCAGCTGCTGATAAAATAGACGGAACACAAGTAAAGGGAGATGCTCTATTTCGCTGGCAGAAAGATTTAGATGATCCCCATACCTTTGTGGACCTTCTTGTGTCAACTTCAAACCCAATGTTGCAGGTTAGGTCATGTGCTTACCATCCTAAGTACCGTGTTGGTGCGTTTGGGACATTCCCTTTACTAATGGGAAACAGGGTGCGTTCTGAGGATTATGGTGTCATGGGAGTAAGATACGGTTCAGAGAATCTATCATTTGGGTCTTCCTTTGTGCCATTTCCTGGATCTGCTGAACTACC ]
[+] EMBL AK122027 [ TCAGGAAGGAAGGAGAGGGAGAAGAAGAGGCAGCGTGCGCACTCGGCTTCGTCAGAGATGGGGATCTTCTGGAGCAAGGCGGAGCCGCCGCCGCCGATGGTGCTCGTCCCGCCGCTCTTCGACTACCCACCCATCGCCGCCCGCACCAGGATGTCGGTGCCAGCGTATGAGCTAATGTTTGGGAAGCTCTCGCTGCAGAATCTGTTTGAGGACTACTTTGATCATGCGGGGAATATGACCTCAAGGGTCATGCTGAAGCCACTGGAGGATCCTCATGTTGATTTGATTGCCACTGTGTCTGCAGCTGCTGATAAAATAGACGGAACACAAGTAAAGGGAGATGCTCTATTTCGCTGGCAGAAAGATTTAGATGATCCCCATACCTTTGTGGACCTTCTTGTGTCAACTTCAAACCCAATGTTGCAGGTTAGGTCATGTGCTTACCATCCTAAGTACCGTGTTGGTGCGTTTGGGACATTCCCTTTACTAATGGGAAACAGGGTGCGTTCTGAGGATTATGGTGTCATGGGAGTAAGATACGGTTCAGAGAATCTATCATTTGGGTCTTCCTTTGTGCCATTTCCTGGATCTGCTGAACTACCCTCTGGAGCATGGTTGGTCGGGAGAAAAGGGAGCTTAAGTGCAGGAGTGCAATACAAGCCACTTAGTGGAAACAAACATCTTATGCCATATACAGATTGGAAGAACTGGAATTGTGCAATCAGTTATGGTGTAGGATTAACAAGCCCACTCAGTCCTTCCTTCATTTTTTCTCTAGAGCTTGCCAGAAGTACAGAGTTCATTGCATCGTTCTATCAACACATGGTTGTTCAAAGAAGGGTTAAAAACCCTTTTGAAGATGATCAGATTGTTGGAATCACAAACTACATTGATTTTGGGCTTGAATTGGCTACAAGGATTGATAAAGATAAACCATCAGAGAGTGCCAACAATTCCTTGTTTCAGTTTGCAGCAAGTTGGCAAGCTAATAAGAACTTCCTATTCAAGGGAAAGCTAGGTCCTTCCAAGTCTTCTGTAGCTTTGGCATTCAAGTCATGGTGGAGACCAT CCTTCACATTTAGTGTCACAGCTGTGAACGATCATTTGAAGGGGACAAGATCATATGGATTTGGAATTCGTGTTGAGGATCTTAGACAGCCAAGTTACCAAAGGGCTGATCCAAACTATGTAATGCTAACACCAAGCAAGGAGCACTTGGCACCAGGTGTTTTGCGAGAGTACGGGAAGCGG CCCATGTTCCAGGCAGAGGTTGATTCGGGCAACTATGAT CA TTTACCTACAGAG TTG AAGCCTAT CAG CAAGATATTCTA GCAGTGG CCGTTTTT GGTCAATCCTTTGCTCAAAAGAACTTCACCCGGTACATCT GAAAGG CATCATCAAACGTAGGTCTGTTTCAACTTTGCAAGACAGTTGGTCCATTATGATGTACAAGTTTTGTCGTGAAGAATGTCTAGGTTGAAACTTAGTGATATCTCACCTTGGAAGTGTAGCCATCAACTCCGTAGATTATAGAAGAATGTGGGCAATCAAGTTGAAGTTATTATTGAGCGTGTTGAATTAATTAATAGACCATATGGTTCGGTCTACTCTTCTGCACTTCACAAACACGGACCAGAACTATCCAAGTCTATTTGAGGTACGTAATCAATTTGCATTTCA ]
[+] EMBL OSC105241 [ GAGGCAGCGTGCGCACTCGGCTTCGTCAGANATGGGGATCTTCTGGAGCAAGGCGGA CNNCGCCGCCGATGGTGCTCGTCCCGCCGCTCTTCGACTACCCACCCATCGCCGCCCGCACCAGGATGTCGGTGCCAGCNTATGAGCTAATGTTTGGGAAGCTCTCGCTGCAGAATCTGTTTGAGGACTACTTTGATCATGCGGGGAATATGACCTCAAGGGTCATGCTGAAGCCACTGGAGGATCCTCATGTTGATTTGATTGCCACTGTGTCTGCAGCTGCTGATAAAATAGACGGAACACAAGTAAAGGGAGATGCTCT ]
[+] EMBL OS1447A [ TGCCAACAATTCCTTGTTTCAGTTTGCAGCAAGTTGGCAAGCTAATAAGAACTTCCTATTCAAGGGAAAGCTAGGTCCTTCCAAGTCTTCTGTAGCTTTGGCATTCAAGTCATGGTGGAGACCAT CCTTCACATTTAGTGTCACAGCTGTGAACGATCATTTGAAGGGGACAAGATCATATGGATTTGGAATTCGTGTTGAGGATCTTAGACAGCCAAGTTACCAAAGGGCTGATCCAAACTATGTAATGCTAACACCAAGCAAGGAGCACTTGGCACCAGGTGTTTTGCGAGAGTACGGGAAGCGG CCCATGTTCCAGGGAGAGGTTGATTCGGGCAACTATGAT CA TTTACCTACAGAG TTG AAGGCTAT CAG CAAGATATTCTAGGCAGTTG CCGTT ]
[-] EMBL CF315458 [ CATTCAAGTCAGGGTGGAGACCATCCCTTCACATTTAGTGTCACAGCTGTGAACGATCATTTGAAGGGGACAAGATCATATGGATTTGGAATTCGTGTTGAGGATCTTAGACAGCCAAGTTACCAAAGGGCTGATCCAAACTATGTAATGCTAACACCAAGCAAGGAGCACTTGGCACCAGGTGTTTTGCGAGAGTACGGGAAGCGG CCCATGTTCCAGGCAGAGGTTGATTCGGGCAACTATGAT CA TTTACCTACAGAG TTG AAGCCTAT CAG CAAGATATTCTA GCAGTGG CCGTTTTT GGTCAATCCTTTGCTCAAAAGAACTTCACCCGGTACATCT GAAAGG CATCATCAAACGTAGGTCTGTTTCAACTTTGCAAGACAGTTGGTCCATTATGATGTACAAGTTTTGTCGTGAAGAATGTCTAGGTTGAAACTTAGTGATATCTCACCTTGGAAGTGTAGCCATCAACTCCGTAGATTATAGAAGAATGTGGGCAATCAAGTTGAAGTTATTATTGAGCGTGTTGAATTAATTAATAGACCATATGGTTCGGTCTACTCTTCTGCACTTCACAAAaaaa ]
[+] EMBL C96651 [ AANCGGCCCCATTTTCCAGGCNGAGGTTGATCCGGGCAACTATGATCCATTTTNCCTACAGAGTTTGAAACCCTATCCAGCCAAGATATTCTA GCNGTGGCCCGTTTTTGGGTCAATCNTTTGCTCAAAAGAACTTCNCCCGGTACATCTGGAAAGGCCATCATCAAACGTNGGTCTGTTTCAACTTTGCAAGACAGTTGGNCCATTATGATGTACAAGTTTTGTCGTGAAGAATGTCTNGGTTGAAACTTAGTGATATCTCACCTTGGAAGTGTAGCCATCAACTCCGTNGATTATAGAAGAATGTGGGCAATCAAGTTGAAGTTATTATTGAGCGTGTTGAATTAATTAATAGACCATATGGTTCGGTCTACTCTTCTGCACTTCACAAACACGGACCAGAACTATCCAAGTCTATTTGAGGTACGTAATCAATTTGCATTTCATTTTTTGGACAAAAAAAAAAAAAAAAA]
[+] EMBL C98291 [ GTCAATCCTNTGCTCAAAAGAACTNCACCCGGTACATCT GAAAGG CATCATCAAACGTAGGTCTGTTNCAACTTTGCAAGACAGTTGGTCCATTATGATGTACAAGTTTTGTCGTGAAGAATGTCTAGGTTGAAACTTAGTGATATCTCACCTTGGAAGTGTAGCCATCAACTCCGTAGATTATAGAAGAATGTGGGCAATCAAGTTGAAGTTATTATTGAGCGTGTTGAATTAATTAATAGACCATATGGTTCGGTCTACTCTTCTGCACTTCACAAACACGGACCAGAACTATCCAAGTCTATTTGAGGTACGTAATCAATTTGCATTTCATTTTTaaaaaa ]
consensusID : consensus_11326#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 438 fasta sequence
[TTTTTTTTTTTTTTTTTGTTGTTTTTTGATTGATTGATAGGGATAATAAGATGCATCGTGCGCACTCGGCTTCGTCAGAGATGGGGATCTTCTGGAGCAAGGCGGAGCCGCCGCCGCCGATGGTGCTCGTCCCGCCGCTCTTTGACTACCCACCCATCGCCGCCCGCACCAGGATGTCGGTGCCAGCGTATGAGCTAATGTTTGGGAAGCTCTCGCTGCAGAATCTGTTTGAGGACTACTTTGATCATGCGGGGGATATGACCTCAAGGGTCATGCTGAAGCCACTGGAGGATCCTCATGTTGATTTGATTGCCACTGTGTCTGCAGCTGCTGATAAAATAGACGGAACACAAGTAAAGGGAGATGCTCTATTTCGCTGGCAGAAAGATTTAGATGATCCCCATACCTTTGTGGACCTTCTTGTGTCAACTTCAAACC]
[+] EMBL CF315454 [TTTTTTTTTTTTTTTTTGTTGTTTTTTGATTGATTGATAGGGATAATAAGATGCATCGTGCGCACTCGGCTTCGTCAGAGATGGGGATCTTCTGGAGCAAGGCGGAGCCGCCGCCGCCGATGGTGCTCGTCCCGCCGCTCTTTGACTACCCACCCATCGCCGCCCGCACCAGGATGTCGGTGCCAGCGTATGAGCTAATGTTTGGGAAGCTCTCGCTGCAGAATCTGTTTGAGGACTACTTTGATCATGCGGGGGATATGACCTCAAGGGTCATGCTGAAGCCACTGGAGGATCCTCATGTTGATTTGATTGCCACTGTGTCTGCAGCTGCTGATAAAATAGACGGAACACAAGTAAAGGGAGATGCTCTATTTCGCTGGCAGAAAGATTTAGATGATCCCCATACCTTTGTGGACCTTCTTGTGTCAACTTCAAACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11326#0 AAAGTGACCGACTGAGAGGAGGAGGGTTCAGGAAGGAAGGAGAGGGAGAAGAAGAGGCAG 60
consensus_11326#1 ----TTTTTTTTTTTTTTTTTGTTGTTTTTTGATTGATTGATAGGGATAATAAGATGCAT 56
* * * * ** ** ** ** ***** ** **** ***
consensus_11326#0 CGTGCGCACTCGGCTTCGTCAGAGATGGGGATCTTCTGGAGCAAGGCGGAGCCGCCGCCG 120
consensus_11326#1 CGTGCGCACTCGGCTTCGTCAGAGATGGGGATCTTCTGGAGCAAGGCGGAGCCGCCGCCG 116
************************************************************
consensus_11326#0 CCGATGGTGCTCGTCCCGCCGCTCTTCGACTACCCACCCATCGCCGCCCGCACCAGGATG 180
consensus_11326#1 CCGATGGTGCTCGTCCCGCCGCTCTTTGACTACCCACCCATCGCCGCCCGCACCAGGATG 176
************************** *********************************
consensus_11326#0 TCGGTGCCAGCGTATGAGCTAATGTTTGGGAAGCTCTCGCTGCAGAATCTGTTTGAGGAC 240
consensus_11326#1 TCGGTGCCAGCGTATGAGCTAATGTTTGGGAAGCTCTCGCTGCAGAATCTGTTTGAGGAC 236
************************************************************
consensus_11326#0 TACTTTGATCATGCGGGGAATATGACCTCAAGGGTCATGCTGAAGCCACTGGAGGATCCT 300
consensus_11326#1 TACTTTGATCATGCGGGGGATATGACCTCAAGGGTCATGCTGAAGCCACTGGAGGATCCT 296
****************** *****************************************
consensus_11326#0 CATGTTGATTTGATTGCCACTGTGTCTGCAGCTGCTGATAAAATAGACGGAACACAAGTA 360
consensus_11326#1 CATGTTGATTTGATTGCCACTGTGTCTGCAGCTGCTGATAAAATAGACGGAACACAAGTA 356
************************************************************
consensus_11326#0 AAGGGAGATGCTCTATTTCGCTGGCAGAAAGATTTAGATGATCCCCATACCTTTGTGGAC 420
consensus_11326#1 AAGGGAGATGCTCTATTTCGCTGGCAGAAAGATTTAGATGATCCCCATACCTTTGTGGAC 416
************************************************************
consensus_11326#0 CTTCTTGTGTCAACTTCAAACCCAATGTTGCAGGTTAGGTCATGTGCTTACCATCCTAAG 480
consensus_11326#1 CTTCTTGTGTCAACTTCAAACC-------------------------------------- 438
**********************
consensus_11326#0 TACCGTGTTGGTGCGTTTGGGACATTCCCTTTACTAATGGGAAACAGGGTGCGTTCTGAG 540
consensus_11326#1 ------------------------------------------------------------
consensus_11326#0 GATTATGGTGTCATGGGAGTAAGATACGGTTCAGAGAATCTATCATTTGGGTCTTCCTTT 600
consensus_11326#1 ------------------------------------------------------------
consensus_11326#0 GTGCCATTTCCTGGATCTGCTGAACTACCCTCTGGAGCATGGTTGGTCGGGAGAAAAGGG 660
consensus_11326#1 ------------------------------------------------------------
consensus_11326#0 AGCTTAAGTGCAGGAGTGCAATACAAGCCACTTAGTGGAAACAAACATCTTATGCCATAT 720
consensus_11326#1 ------------------------------------------------------------
consensus_11326#0 ACAGATTGGAAGAACTGGAATTGTGCAATCAGTTATGGTGTAGGATTAACAAGCCCACTC 780
consensus_11326#1 ------------------------------------------------------------
consensus_11326#0 AGTCCTTCCTTCATTTTTTCTCTAGAGCTTGCCAGAAGTACAGAGTTCATTGCATCGTTC 840
consensus_11326#1 ------------------------------------------------------------
consensus_11326#0 TATCAACACATGGTTGTTCAAAGAAGGGTTAAAAACCCTTTTGAAGATGATCAGATTGTT 900
consensus_11326#1 ------------------------------------------------------------
consensus_11326#0 GGAATCACAAACTACATTGATTTTGGGCTTGAATTGGCTACAAGGATTGATAAAGATAAA 960
consensus_11326#1 ------------------------------------------------------------
consensus_11326#0 CCATCAGAGAGTGCCAACAATTCCTTGTTTCAGTTTGCAGCAAGTTGGCAAGCTAATAAG 1020
consensus_11326#1 ------------------------------------------------------------
consensus_11326#0 AACTTCCTATTCAAGGGAAAGCTAGGTCCTTCCAAGTCTTCTGTAGCTTTGGCATTCAAG 1080
consensus_11326#1 ------------------------------------------------------------
consensus_11326#0 TCATGGTGGAGACCATCCTTCACATTTAGTGTCACAGCTGTGAACGATCATTTGAAGGGG 1140
consensus_11326#1 ------------------------------------------------------------
consensus_11326#0 ACAAGATCATATGGATTTGGAATTCGTGTTGAGGATCTTAGACAGCCAAGTTACCAAAGG 1200
consensus_11326#1 ------------------------------------------------------------
consensus_11326#0 GCTGATCCAAACTATGTAATGCTAACACCAAGCAAGGAGCACTTGGCACCAGGTGTTTTG 1260
consensus_11326#1 ------------------------------------------------------------
consensus_11326#0 CGAGAGTACGGGAAGCGGCCCATGTTCCAGGCAGAGGTTGATTCGGGCAACTATGATCAT 1320
consensus_11326#1 ------------------------------------------------------------
consensus_11326#0 TTACCTACAGAGTTGAAGCCTATCAGCAAGATATTCTAGCAGTGGCCGTTTTTGGTCAAT 1380
consensus_11326#1 ------------------------------------------------------------
consensus_11326#0 CCTTTGCTCAAAAGAACTTCACCCGGTACATCTGAAAGGCATCATCAAACGTAGGTCTGT 1440
consensus_11326#1 ------------------------------------------------------------
consensus_11326#0 TTCAACTTTGCAAGACAGTTGGTCCATTATGATGTACAAGTTTTGTCGTGAAGAATGTCT 1500
consensus_11326#1 ------------------------------------------------------------
consensus_11326#0 AGGTTGAAACTTAGTGATATCTCACCTTGGAAGTGTAGCCATCAACTCCGTAGATTATAG 1560
consensus_11326#1 ------------------------------------------------------------
consensus_11326#0 AAGAATGTGGGCAATCAAGTTGAAGTTATTATTGAGCGTGTTGAATTAATTAATAGACCA 1620
consensus_11326#1 ------------------------------------------------------------
consensus_11326#0 TATGGTTCGGTCTACTCTTCTGCACTTCACAAACACGGACCAGAACTATCCAAGTCTATT 1680
consensus_11326#1 ------------------------------------------------------------
consensus_11326#0 TGAGGTACGTAATCAATTTGCATTTCATTTTTTGGACAAAAAAAAAAAAAAAAA 1734
consensus_11326#1 ------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||