cluster # 11331

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Oryza sativa
cluster # 11331 cluster # 11331 Sequences # 8 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11331#0 length = 2150 sequences # 4
consensus_11331#1 length = 1611 sequences # 2

consensus_11331#2 length = 507 sequences # 1
consensus_11331#3 length = 199 sequences # 1

consensusID : consensus_11331#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 2150
fasta sequence

                              [TGCTTTTTCTTCTTCTTCTTCTTCTTCTCCATCTCTCCTCTCCTGTTTCTTTCTTCTCTCCTTGTTGTTGCAGCTGTCCTCTCTCTCTCCTCAAAGAGAAAATTAAGCCACTGGCCCCTTTAAGATTGACCTGAGATTTCCAGTACACAAGTTGTGTGCATGCAAAGAGAGGCCAAAGCTAAGCTAGCAAAACACACATTCCTTTCCCACAGCTAGCTTAGCTTGAAGCAAGCAAGAACTCATCATCTTTGTTTCTACATATCCTTTAATACTCTCCTCTCTGTCACTAGCAGTGATGAATAGAGGAGAATTCCAGAGCTCCCTGGTGCAGCAGATGATCTGGAGCGGCAGTAGTACAGGCACGGCTACCGGCGTCGGCAGCGGCGGCGGCGCCGGCAGTTTGATGGGCAGCTTGAAGCCATGCCATGAGGATCAAGAGGCCTCTCCTAACATGCCCTCCTTGTCTTC-TCCATCGTTGATCTTCTCGCAGCAGTTTCAGCACAGCTCTCCAGGTCTAGTTCCGATGAACGGCACCGCCGGCGCCGCCGC-TTCTCTTCCGAGCTTGCACGACGGCGGCGGCGGCGGCCATGAGAGCAGCATGCCGGAGTCATGGAGCCAACTGCTTCTTGGGGGATTAGCTGGAGATCAGGAGAGGTACAGCGCCACTGCGGCTCTCCTGTCAAAGGGATTAGAGAATTGGGGAGATCACGCTGCTGCAGCTGCAGCCAGTGCATGCATGGTTGGTGGCATGAAGGAGGAGGGCTCCATGGCTCAAGCTGCAGCCACTGCTGCTGCTGCTGCTTACAGCTTCTATGGGAGCCACCTTGCTGGTGATCATCAGCATGAGATCCAAGCAGCAGCAGCAGGAGGAGGTGCTAGCAACAAGTCTCAGCTGAGCCAGATGCTCATGGCTTCCTCTCCTAGGTCATGCATCACCACCAGCCTCGGCAGCAACATGCTCGACTTCTCCAACACCGCGGCGCCGCCGGAGCTCCGGAGCCACCACCACAACTCCGATAATTCATCAGAGTGTAACAGCACAGCGACTGGTTCGGCCCTCAAGAAGGCTAGGGTTCAGGCCTCCTCTTCAGCACAATCTACTCTAAAGGTGAGGAAGGAGAGGCTAGGGGATAGAATAACTGCACTTCATCAGATTGTATCCCCA-TTGGCAAGACTGACACAGCGTCTGTACTGCAAGAGACCATTGGCTATATCAGATTCCTCCTGAGTCAAATTGAGGCTCTGAGCTACCCTTACATGGGCGACGCCAACGGGACCGGTCCTATGCAAAATGGACCAGTTGGAGAAAGGAACCCTGGCCTCTTCCCGGAATACCCTGGCCAGTTGCTAAACCATAATGGCAACACTGGAGCACAGCAGCCTGCAGCCCAACCTGAGCAGCAGGGAGCAAACGACGATGGAAAGAAGGACCTGAGGAGCCGGGGGCTGTGCCTCGTTCCAGTGTCGTGCACGTCGCACTTTGGAGGGGACAATGCCGCTGACTACTGGGCCCCGGCGCCGCTCGGCGGGATCCTACGGTAGAATGCATCGTT-GAGATTCGTGCATACAAAGC-GTGGCGGCACAGCGAGTACTATATGTTGATGCATGAGGAGGCTACAGACGAAATAGGTCTCTT-AAGAATGGAGAACAGAGTGTGCATTGGGTGCAGGAGTAACGTCGTCATAACATCATGAGCAGTCATTCTCTGGTAAGAAAAAAAATTACCTGTAAGGTTGATTGCTCTTGATGCTATGGGAGTGAGAGGTAGCTAGCTATAGTATAATTAATTAAGCTTCTGGATCTGCAAATTAAGAAGCTTCAGTTCAAGAAGGAGACCTTGCAAAAGTTGATGCCCCCTTTGATATGTATATGTAAAATCTAGCAAGTCAGTGAACACTTTGCTCATACTACCGTGCTTTGATTTATCATCAGAAGCAGAAAAGCTTGCGCGGTAGTGTCAATATTCCGTCAGTTGCTCGGCTGGTGTATGTAGGAAATTAAAGTTGATATCCCATATCACATATATGTATATTGACAGTTAATTTGTATCAGTTATTTACTGAGTTAAGTCAGCAATATTATTTGTCTTCGATGTTGCTGAATTATTTGTGTGCATCTATATATGGATTTTCTGTATGTCAATCGACAGG]

[+] EMBL AK100786             [TGCTTTTTCTTCTTCTTCTTCTTCTTCTCCATCTCTCCTCTCCTGTTTCTTTCTTCTCTCCTTGTTGTTGCAGCTGTCCTCTCTCTCTCCTCAAAGAGAAAATTAAGCCACTGGCCCCTTTAAGATTGACCTGAGATTTCCAGTACACAAGTTGTGTGCATGCAAAGAGAGGCCAAAGCTAAGCTAGCAAAACACACATTCCTTTCCCACAGCTAGCTTAGCTTGAAGCAAGCAAGAACTCATCATCTTTGTTTCTACATATCCTTTAATACTCTCCTCTCTGTCACTAGCAGTGATGAATAGAGGAGAATTCCAGAGCTCCCTGGTGCAGCAGATGATCTGGAGCGGCAGTAGTACAGGCACGGCTACCGGCGTCGGCAGCGGCGGCGGCGCCGGCAGTTTGATGGGCAGCTTGAAGCCATGCCATGAGGATCAAGAGGCCTCTCCTAACATGCCCTCCTTGTCTTC TCCATCGTTGATCTTCTCGCAGCAGTTTCAGCACAGCTCTCCAGGTCTAGTTCCGATGAACGGCACCGCCGGCGCCGCCGC TTCTCTTCCGAGCTTGCACGACGGCGGCGGCGGCGGCCATGAGAGCAGCATGCCGGAGTCATGGAGCCAACTGCTTCTTGGGGGATTAGCTGGAGATCAGGAGAGGTACAGCGCCACTGCGGCTCTCCTGTCAAAGGGATTAGAGAATTGGGGAGATCACGCTGCTGCAGCTGCAGCCAGTGCATGCATGGTTGGTGGCATGAAGGAGGAGGGCTCCATGGCTCAAGCTGCAGCCACTGCTGCTGCTGCTGCTTACAGCTTCTATGGGAGCCACCTTGCTGGTGATCATCAGCATGAGATCCAAGCAGCAGCAGCAGGAGGAGGTGCTAGCAACAAGTCTCAGCTGAGCCAGATGCTCATGGCTTCCTCTCCTAGGTCATGCATCACCACCAGCCTCGGCAGCAACATGCTCGACTTCTCCAACACCGCGGCGCCGCCGGAGCTCCGGAGCCACCACCACAACTCCGATAATTCATCAGAGTGTAACAGCACAGCGACTGGTTCGGCCCTCAAGAAGGCTAGGGTTCAGGCCTCCTCTTCAGCACAATCTACTCTAAAGGTGAGGAAGGAGAGGCTAGGGGATAGAATAACTGCACTTCATCAGATTGTATCCCCA TTGGCAAGACTGACACAGCGTCTGTACTGCAAGAGACCATTGGCTATATCAGATTCCTCCTGAGTCAAATTGAGGCTCTGAGCTACCCTTACATGGGCGACGCCAACGGGACCGGTCCTATGCAAAATGGACCAGTTGGAGAAAGGAACCCTGGCCTCTTCCCGGAATACCCTGGCCAGTTGCTAAACCATAATGGCAACACTGGAGCACAGCAGCCTGCAGCCCAACCTGAGCAGCAGGGAGCAAACGACGATGGAAAGAAGGACCTGAGGAGCCGGGGGCTGTGCCTCGTTCCAGTGTCGTGCACGTCGCACTTTGGAGGGGACAATGCCGCTGACTACTGGGCCCCGGCGCCGCTCGGCGGGATCCTACGGTAGAATGCATCGTT GAGATTCGTGCATACAAAGC GTGGCGGCACAGCGAGTACTATATGTTGATGCATGAGGAGGCTACAGACGAAATAGGTCTCTT AAGAATGGAGAACAGAGTGTGCATTGGGTGCAGGAGTAACGTCGTCATAACATCATGAGCAGTCATTCTCTGGTAAGAAAAAAAATTACCTGTAAGGTTGATTGCTCTTGATGCTATGGGAGTGAGAGGTAGCTAGCTATAGTATAATTAATTAAGCTTCTGGGTCTGCAAATTAAGAAGCTTCAGTTCAAGAAGGAGACCTTGCAAAAGTTGATGCCCCCTTTGATATGTATATGTAAAATCTAGCAAGTCAGTGAACACTTTGCTCATACTACCGTGCTTTGATTTATCATCAGAAGCAGAAAAGCTTGCGCGGTAGTGTCAATATTCCGTCAGTTGCTCGGCTGGTGTATGTAGGAAATTAAAGTTGATATCCCATATCACATATATGTATATTGACAGTTAATTTGTATCAGTTATTTACTGAGTTAAGTCAGCAATATTATTTGTCTTC                                                            ]
[+] EMBL OSR3238A             [                                                                                                                                                                         AGGCCAAAGCTAAGCTAGCAAAACACACATTCCTTTCCCACAGCTAGCTTAGCTTGAAGCAAGCAAGAACTCATCATCTTTGTTTCTACATATCCTTTAATACTCTCCTCTCTGTCACTAGCAGTGATGAATAGAGGAGAATTCCAGAGCTCCCTGGTGCAGCAGATGATCTGGAGCGGCAGTAGTACAGGCACGGCTACCGGCGTCGGCAGCGGCGGCGGCGCGGACAGTTTGATGGGCAGCTTGAAGCCATGCCATGAGGATCAAGAGGCCTCTCCTAACATGCCCTCCTTGTCTTCTTCCATCGTTGATCTTCTCGCAGCAGTTTCAGCACAGCTCTCCAGGTCTAGTTCCGATGAACGGCANCG CGGCGGCG CGCTTTCTCTTCCGAGCTTGCACGACGGCGGCGGCGGCGG CATGAGAGCAG ATGCCGGAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AK121917             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CTGCAGCCAGTGCATGCATGGTTGGTGGCATGAAGGAGGAGGGCTCCATGGCTCAAGCTGCAGCCACTGCTGCTGCTGCTGCTTACAGCTTCTATGGGAGCCACCTTGCTGGTGATCATCAGCATGAGATCCAAGCAGCAGCAGCAGGAGGAGGTGCTAGCAACAAGTCTCAGCTGAGCCAGATGCTCATGGCTTCCTCTCCTAGGTCATGCATCACCACCAGCCTCGGCAGCAACATGCTCGACTTCTCCAACACCGCGGCGCCGCCGGAGCTCCGGAGCCACCACCACAACTCCGATAATTCATCAGAGTGTAACAGCACAGCGACTGGTTCGGCCCTCAAGAAGGCTAGGGTTCAGGCCTCCTCTTCAGCACAATCTACTCTAAAGGTGAGGAAGGAGAGGCTAGGGGATAGAATAACTGCACTTCATCAGATTGTATCCCCATTTGGCAAGACTGACACAGCGTCTGTACTGCAAGAGACCATTGGCTATATCAGATTCCTCCTGAGTCAAATTGAGGCTCTGAGCTACCCTTACATGGGCGACGCCAACGGGACCGGTCCTATGCAAAATGGACCAGTTGGAGAAAGGAACCCTGGCCTCTTCCCGGAATACCCTGGCCAGTTGCTAAACCATAATGGCAACACTGGAGCACAGCAGCCTGCAGCCCAACCTGAGCAGCAGGGAGCAAACGACGATGGAAAGAAGGACCTGAGGAGCCGGGGGCTGTGCCTCGTTCCAGTGTCGTGCACGTCGCACTTTGGAGGGGACAATGCCGCTGACTACTGGGCCCCGGCGCCGCTCGGCGGGATCCTACGGTAGAATGCATCGTT GAGATTCGTGCATACAAAGC GTGGCGGCACAGCGAGTACTATATGTTGATGCATGAGGAGGCTACAGACGAAATAGGTCTCTT AAGAATGGAGAACAGAGTGTGCATTGGGTGCAGGAGTAACGTCGTCATAACATCATGAGCAGTCATTCTCTGGTAAGAAAAAAAATTACCTGTAAGGTTGATTGCTCTTGATGCTATGGGAGTGAGAGGTAGCTAGCTATAGTATAATTAATTAAGCTTCTGGATCTGCAAATTAAGAAGCTTCAGTTCAAGAAGGAGACCTTGCAAAAGTTGATGCCCCCTTTGATAGGTATATGTAAAATCTAGCAAGTCAGTGAACACTTTGCTCATACTACCGTGCTTTGATTTATCATCAGAAGCAGAAAAGCTTGCGCGGTAGTGTCAATATTCCGTCAGTTGCTCGGCTGGTGTATGTAGGAAATTAAAGTTGATATCCCATATCACATATATGTATATTGACAGTTAATTTGTATCAGTTATTTACTGAGTTAAGTCAGCAATATTATTTGTCTTCGATGTTGCTGAATTATTTGTGTGCATCTATATATGGATTTTCTGTATGTCAATCGACAGG]
[+] EMBL AU082906             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TCGTTNAAGATTCGTGCATNCAAAGCGGTGCCGGCACAGCGAGTACTATATGTTGATGCATAAGGAGGTTACAGACGAAATAGGTCTCTTAAAGAATGGAGANCAGAGTGTGCATTGGGTNCAGGAGTAACGTCGTCATAACATCATGAGCAGTCATTCTCTGGTAAGAAAAAAAATTACCTGTAAGGTTGATTGCTCTTGATGCTATGGGAGTGAGAGGTAGCTAGCTATAGTATAATTAATTAAGCTTCTGGATCTGCAAATTAAGAAGCTTCAGTTCAAGAAGGAGACCTTGCAAAAGTTGATGCCCCCTTTGATATGTATATGTAAAATCTAGCAAGTCAGTGAACACTTTGCTCATACTACCGTGCTTTGATTTATCATCAGAAGCAGAAAAGCTTGCGCGGTAGTGTCAATATTCCGTCAGTTGCTCGGCTGGTGTATGTAGGAAATTAAAGTTGATATCCCATATCACATATATGTATATTGACAGTTAATTTGTATCAGTTATTTACTGAGTTAAGTCAGCAATATTATTTGTCTTCGATGTTGCTGAATTATTTGTGTGCATCTAaaaaa                          ]




>consensus_11331#0
TGCTTTTTCTTCTTCTTCTTCTTCTTCTCCATCTCTCCTCTCCTGTTTCTTTCTTCTCTC
CTTGTTGTTGCAGCTGTCCTCTCTCTCTCCTCAAAGAGAAAATTAAGCCACTGGCCCCTT
TAAGATTGACCTGAGATTTCCAGTACACAAGTTGTGTGCATGCAAAGAGAGGCCAAAGCT
AAGCTAGCAAAACACACATTCCTTTCCCACAGCTAGCTTAGCTTGAAGCAAGCAAGAACT
CATCATCTTTGTTTCTACATATCCTTTAATACTCTCCTCTCTGTCACTAGCAGTGATGAA
TAGAGGAGAATTCCAGAGCTCCCTGGTGCAGCAGATGATCTGGAGCGGCAGTAGTACAGG
CACGGCTACCGGCGTCGGCAGCGGCGGCGGCGCCGGCAGTTTGATGGGCAGCTTGAAGCC
ATGCCATGAGGATCAAGAGGCCTCTCCTAACATGCCCTCCTTGTCTTCTCCATCGTTGAT
CTTCTCGCAGCAGTTTCAGCACAGCTCTCCAGGTCTAGTTCCGATGAACGGCACCGCCGG
CGCCGCCGCTTCTCTTCCGAGCTTGCACGACGGCGGCGGCGGCGGCCATGAGAGCAGCAT
GCCGGAGTCATGGAGCCAACTGCTTCTTGGGGGATTAGCTGGAGATCAGGAGAGGTACAG
CGCCACTGCGGCTCTCCTGTCAAAGGGATTAGAGAATTGGGGAGATCACGCTGCTGCAGC
TGCAGCCAGTGCATGCATGGTTGGTGGCATGAAGGAGGAGGGCTCCATGGCTCAAGCTGC
AGCCACTGCTGCTGCTGCTGCTTACAGCTTCTATGGGAGCCACCTTGCTGGTGATCATCA
GCATGAGATCCAAGCAGCAGCAGCAGGAGGAGGTGCTAGCAACAAGTCTCAGCTGAGCCA
GATGCTCATGGCTTCCTCTCCTAGGTCATGCATCACCACCAGCCTCGGCAGCAACATGCT
CGACTTCTCCAACACCGCGGCGCCGCCGGAGCTCCGGAGCCACCACCACAACTCCGATAA
TTCATCAGAGTGTAACAGCACAGCGACTGGTTCGGCCCTCAAGAAGGCTAGGGTTCAGGC
CTCCTCTTCAGCACAATCTACTCTAAAGGTGAGGAAGGAGAGGCTAGGGGATAGAATAAC
TGCACTTCATCAGATTGTATCCCCATTGGCAAGACTGACACAGCGTCTGTACTGCAAGAG
ACCATTGGCTATATCAGATTCCTCCTGAGTCAAATTGAGGCTCTGAGCTACCCTTACATG
GGCGACGCCAACGGGACCGGTCCTATGCAAAATGGACCAGTTGGAGAAAGGAACCCTGGC
CTCTTCCCGGAATACCCTGGCCAGTTGCTAAACCATAATGGCAACACTGGAGCACAGCAG
CCTGCAGCCCAACCTGAGCAGCAGGGAGCAAACGACGATGGAAAGAAGGACCTGAGGAGC
CGGGGGCTGTGCCTCGTTCCAGTGTCGTGCACGTCGCACTTTGGAGGGGACAATGCCGCT
GACTACTGGGCCCCGGCGCCGCTCGGCGGGATCCTACGGTAGAATGCATCGTTGAGATTC
GTGCATACAAAGCGTGGCGGCACAGCGAGTACTATATGTTGATGCATGAGGAGGCTACAG
ACGAAATAGGTCTCTTAAGAATGGAGAACAGAGTGTGCATTGGGTGCAGGAGTAACGTCG
TCATAACATCATGAGCAGTCATTCTCTGGTAAGAAAAAAAATTACCTGTAAGGTTGATTG
CTCTTGATGCTATGGGAGTGAGAGGTAGCTAGCTATAGTATAATTAATTAAGCTTCTGGA
TCTGCAAATTAAGAAGCTTCAGTTCAAGAAGGAGACCTTGCAAAAGTTGATGCCCCCTTT
GATATGTATATGTAAAATCTAGCAAGTCAGTGAACACTTTGCTCATACTACCGTGCTTTG
ATTTATCATCAGAAGCAGAAAAGCTTGCGCGGTAGTGTCAATATTCCGTCAGTTGCTCGG
CTGGTGTATGTAGGAAATTAAAGTTGATATCCCATATCACATATATGTATATTGACAGTT
AATTTGTATCAGTTATTTACTGAGTTAAGTCAGCAATATTATTTGTCTTCGATGTTGCTG
AATTATTTGTGTGCATCTATATATGGATTTTCTGTATGTCAATCGACAGG

consensusID : consensus_11331#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1611
fasta sequence

                              [GGAGAATTCCAGAGCTCCCTGGTGCAGCAGATGATCTGGAGCGGCAGTAGTACAGGCACGGCTACCGGCGTCGGCAGCGGCGGCGGCGCCGGCAGTTTGATGGGCAGCTTGAAGCCATGCCATGAGGATCAAGAGGCCTCTCCTAACATGCCCTCCTTGTCTTCTCCATCGTTGATCTTCTCGCAGCAGTTTCAGCACAGCTCTCCAGGTCTAGTTCCGATGAACGGCACCGCCGGCGCCGCCGCTTCTCTTCCGAGCTTGCACGACGGCGGCGGCGGCGGCCATGAGAGCAGCATGCCGGAGTCATGGAGCCAACTGCTTCTTGGGGGATTAGCTGGAGATCAGGAGAGGTACAGCGTCACTGCGGCTCTCCTGTCAAAGGGATTAGAGAATTGGGGAGATCACGCTGCTGCAGCTGCAGCCAGTGCATGCATGGTTGGTGGCATGAAGGAGGAGGGCTCCATGGCTCAAGCTGCAGCCACTGCTGCTGCTGCTGCTTACAGCTTCTATGGGAGCCACCTTGCTGGTGATCATCAGCATGAGATCCAAGCAGCAGCAGCAGGAGGAGGTGCTAGCAACAAGTCTCAGCTGAGCCAGATGCTCATGGCTTCCTCTCCTAGGTCATGCATCACCACCAGCCTCGGCAGCAACATGCTCGACTTCTCCAACACCGCGGCGCCGCCGGAGCTCCGGAGCCACCACCACAACTCCGATAATTCATCAGAGTGTAACAGCACAGCGACTGGTTCGGCCCTCAAGAAGGCTAGGGTTCAGGCCTCCTCTTCAGCACAATCTACTCTAAAGGTGAGGAAGGAGAGGCTAGGGGATAGAATAACTGCACTTCATCAGATTGTATCCCCATTTGGCAAGACTGACACAGCGTCTGTACTGCAAGAGACCATTGGCTATATCAGATTCCTCCTGAGTCAAATTGAGGCTCTGAGCTACCCTTACATGGGCGACGCCAACGGGACCGGTCCTATGCAAAATGGACCAGTTGGAGAAAGGAACCCTGGCCTCTTCCCGGAATACCCTGGCCAGTTGCTAAACCATCAAGGTGACACTCAGCTTGGCTGCAAAACGATTTGCAAATTCGTTGTCCCTCTGTAAGGAAACATTTTTCTCGCCAGAGATGGATGATGACCTGGTCCAAAGGTACCAAGGGCTAATGAAGGACAGCTCAAAGTTACCACTATTTGACCTAAGGAAGCTCAATGCATCATTGCCTGTAGCTTCTGTGCCAAATAATACAGTAAACATCCTCGTTGTGGGCGCCAGCAGTGACTTCATTGTTGATGCTGAAGGGCTTTCAGAAACTGCAAGATTTTATAATGCGCAACCAGTCTGCATCGAAGGGATAGCCCATGATATGATGCTTGATTGCTCGTGGGATAAAGGAGCTGGGATTATCTTGTCATGGCTGGAGAAACTTACACCAAGATAAATCTTTTGTATTTTTTAAGACCTGTTTCTACATTTTGTAGCCCTTGTTCATTTTCAAATGTAGAATCTTTGGTTGATAGGCAGTTTAGTTAGTGCTCTTCAGTTTTTTTTGTATTATTATTTGATTGAATAAATTTAAGCATGCTTAGTGAACAATACTGCATGAAT]

[+] EMBL AK107340             [GGAGAATTCCAGAGCTCCCTGGTGCAGCAGATGATCTGGAGCGGCAGTAGTACAGGCACGGCTACCGGCGTCGGCAGCGGCGGCGGCGCCGGCAGTTTGATGGGCAGCTTGAAGCCATGCCATGAGGATCAAGAGGCCTCTCCTAACATGCCCTCCTTGTCTTCTCCATCGTTGATCTTCTCGCAGCAGTTTCAGCACAGCTCTCCAGGTCTAGTTCCGATGAACGGCACCGCCGGCGCCGCCGCTTCTCTTCCGAGCTTGCACGACGGCGGCGGCGGCGGCCATGAGAGCAGCATGCCGGAGTCATGGAGCCAACTGCTTCTTGGGGGATTAGCTGGAGATCAGGAGAGGTACAGCGTCACTGCGGCTCTCCTGTCAAAGGGATTAGAGAATTGGGGAGATCACGCTGCTGCAGCTGCAGCCAGTGCATGCATGGTTGGTGGCATGAAGGAGGAGGGCTCCATGGCTCAAGCTGCAGCCACTGCTGCTGCTGCTGCTTACAGCTTCTATGGGAGCCACCTTGCTGGTGATCATCAGCATGAGATCCAAGCAGCAGCAGCAGGAGGAGGTGCTAGCAACAAGTCTCAGCTGAGCCAGATGCTCATGGCTTCCTCTCCTAGGTCATGCATCACCACCAGCCTCGGCAGCAACATGCTCGACTTCTCCAACACCGCGGCGCCGCCGGAGCTCCGGAGCCACCACCACAACTCCGATAATTCATCAGAGTGTAACAGCACAGCGACTGGTTCGGCCCTCAAGAAGGCTAGGGTTCAGGCCTCCTCTTCAGCACAATCTACTCTAAAGGTGAGGAAGGAGAGGCTAGGGGATAGAATAACTGCACTTCATCAGATTGTATCCCCATTTGGCAAGACTGACACAGCGTCTGTACTGCAAGAGACCATTGGCTATATCAGATTCCTCCTGAGTCAAATTGAGGCTCTGAGCTACCCTTACATGGGCGACGCCAACGGGACCGGTCCTATGCAAAATGGACCAGTTGGAGAAAGGAACCCTGGCCTCTTCCCGGAATACCCTGGCCAGTTGCTAAACCATCAAGGTGACACTCAGCTTGGCTGCAAAACGATTTGCAAATTCGTTGTCCCTCTGTAAGGAAACATTTTTCTCGCCAGAGATGGATGATGACCTGGTCCAAAGGTACCAAGGGCTAATGAAGGACAGCTCAAAGTTACCACTATTTGACCTAAGGAAGCTCAATGCATCATTGCCTGTAGCTTCTGTGCCAAATAATACAGTAAACATCCTCGTTGTGGGCGCCAGCAGTGACTTCATTGTTGATGCTGAAGGGCTTTCAGAAACTGCAAGATTTTATAATGCGCAACCAGTCTGCATCGAAGGGATAGCCCATGATATGATGCTTGATTGCTCGTGGGATAAAGGAGCTGGGATTATCTTGTCATGGCTGGAGAAACTTACACCAAGATAAATCTTTTGTATTTTTTAAGACCTGTTTCTACATTTTGTAGCCCTTGTTCATTTTCAAATGTAGAATCTTTGGTTGATAGGCAGTTTAGTTAGTGCTCTTCAGTTTTTTTTGTATTATTATTTGATTGAATAAATTTAAGCATGCTTAGTGAACAATACTGCATGAAT]
[+] EMBL C28657               [                                                                                                                                                                                                                                                                                                                                                                                                                                                       GTGGCATGAAGGAGGAGGGCTCCATGGCTCAAGCTGCAGCCACTGNT CTGCTGCTGCTTACAGCTTCTATGGGAGCCACCTTGCTGGTGATCATCAGCATGAGATCCAAGCAGCAGCAGCAGGAGGAGGTGCTAGCAACAAGTCTCAGCTGAGCCAGATGCTCATGGCTTCCTCTCCTAGGTCATGCATCACCACCAGCCTCGGCAGCAACATGCTCGACTTCTCCAACACCGCGGCGCCG CGGAGCTCCGGAGCCACCACCACAACTCCGATAATTCATCAGAGTGTAACAGCACAGCGACTGGTTCGGCCCTCAAGAAGGCTAGGGTTCAGGCCTCCTCTTCAGCACAATCTACTCTAAAGGTGAGGAAGGAGAGGCTAGGGGATAGAATAACTGCACTTCATCAGATTGTATn                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]




>consensus_11331#1
GGAGAATTCCAGAGCTCCCTGGTGCAGCAGATGATCTGGAGCGGCAGTAGTACAGGCACG
GCTACCGGCGTCGGCAGCGGCGGCGGCGCCGGCAGTTTGATGGGCAGCTTGAAGCCATGC
CATGAGGATCAAGAGGCCTCTCCTAACATGCCCTCCTTGTCTTCTCCATCGTTGATCTTC
TCGCAGCAGTTTCAGCACAGCTCTCCAGGTCTAGTTCCGATGAACGGCACCGCCGGCGCC
GCCGCTTCTCTTCCGAGCTTGCACGACGGCGGCGGCGGCGGCCATGAGAGCAGCATGCCG
GAGTCATGGAGCCAACTGCTTCTTGGGGGATTAGCTGGAGATCAGGAGAGGTACAGCGTC
ACTGCGGCTCTCCTGTCAAAGGGATTAGAGAATTGGGGAGATCACGCTGCTGCAGCTGCA
GCCAGTGCATGCATGGTTGGTGGCATGAAGGAGGAGGGCTCCATGGCTCAAGCTGCAGCC
ACTGCTGCTGCTGCTGCTTACAGCTTCTATGGGAGCCACCTTGCTGGTGATCATCAGCAT
GAGATCCAAGCAGCAGCAGCAGGAGGAGGTGCTAGCAACAAGTCTCAGCTGAGCCAGATG
CTCATGGCTTCCTCTCCTAGGTCATGCATCACCACCAGCCTCGGCAGCAACATGCTCGAC
TTCTCCAACACCGCGGCGCCGCCGGAGCTCCGGAGCCACCACCACAACTCCGATAATTCA
TCAGAGTGTAACAGCACAGCGACTGGTTCGGCCCTCAAGAAGGCTAGGGTTCAGGCCTCC
TCTTCAGCACAATCTACTCTAAAGGTGAGGAAGGAGAGGCTAGGGGATAGAATAACTGCA
CTTCATCAGATTGTATCCCCATTTGGCAAGACTGACACAGCGTCTGTACTGCAAGAGACC
ATTGGCTATATCAGATTCCTCCTGAGTCAAATTGAGGCTCTGAGCTACCCTTACATGGGC
GACGCCAACGGGACCGGTCCTATGCAAAATGGACCAGTTGGAGAAAGGAACCCTGGCCTC
TTCCCGGAATACCCTGGCCAGTTGCTAAACCATCAAGGTGACACTCAGCTTGGCTGCAAA
ACGATTTGCAAATTCGTTGTCCCTCTGTAAGGAAACATTTTTCTCGCCAGAGATGGATGA
TGACCTGGTCCAAAGGTACCAAGGGCTAATGAAGGACAGCTCAAAGTTACCACTATTTGA
CCTAAGGAAGCTCAATGCATCATTGCCTGTAGCTTCTGTGCCAAATAATACAGTAAACAT
CCTCGTTGTGGGCGCCAGCAGTGACTTCATTGTTGATGCTGAAGGGCTTTCAGAAACTGC
AAGATTTTATAATGCGCAACCAGTCTGCATCGAAGGGATAGCCCATGATATGATGCTTGA
TTGCTCGTGGGATAAAGGAGCTGGGATTATCTTGTCATGGCTGGAGAAACTTACACCAAG
ATAAATCTTTTGTATTTTTTAAGACCTGTTTCTACATTTTGTAGCCCTTGTTCATTTTCA
AATGTAGAATCTTTGGTTGATAGGCAGTTTAGTTAGTGCTCTTCAGTTTTTTTTGTATTA
TTATTTGATTGAATAAATTTAAGCATGCTTAGTGAACAATACTGCATGAAT

consensusID : consensus_11331#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 507
fasta sequence

                              [GTGTTTGTGAATAGTGTGGGCTTCTCTTNGAAGTGGTCTNATCATTGTGGTGAACAGCTGATGGAGGGTTGACGCTGAGGCTGANTAAGGTGGATGAGAATGTGAAAGTGTGANACGCTTGTTGTCTGGGGATTTCTNGGCAAGATGTGTATATGATATGGCTGTGCCATGTGTGCCACAGATANGGAGGACGCCTGCTGGCAAATAGTNTGGGATGGCCCCCCCTCGTTGGATGATGGTGATGATGGTGAAATAGTCTGAGGCACAGGTTAGGTGAACACCTTTGCTGCATGACTACCGTGCTGTTGATGTTGATCATCAGAGAGCAGGAAAAGCTTGCGCGGTAGTGTCAATATTCCGTGCAGTTGCTGCGGCTGGTGTATGTAGGAAATTAAAGTTGGATGATCCCATATCACATATATGTATATTGACAGTTAATTTGTATCAGTTATTTACTGAGTTAAGTCAGCCAATATTATTTGTCTTCGATGTTGCTGAAAAAAAAAA]

[+] EMBL BQ906894             [GTGTTTGTGAATAGTGTGGGCTTCTCTTNGAAGTGGTCTNATCATTGTGGTGAACAGCTGATGGAGGGTTGACGCTGAGGCTGANTAAGGTGGATGAGAATGTGAAAGTGTGANACGCTTGTTGTCTGGGGATTTCTNGGCAAGATGTGTATATGATATGGCTGTGCCATGTGTGCCACAGATANGGAGGACGCCTGCTGGCAAATAGTNTGGGATGGCCCCCCCTCGTTGGATGATGGTGATGATGGTGAAATAGTCTGAGGCACAGGTTAGGTGAACACCTTTGCTGCATGACTACCGTGCTGTTGATGTTGATCATCAGAGAGCAGGAAAAGCTTGCGCGGTAGTGTCAATATTCCGTGCAGTTGCTGCGGCTGGTGTATGTAGGAAATTAAAGTTGGATGATCCCATATCACATATATGTATATTGACAGTTAATTTGTATCAGTTATTTACTGAGTTAAGTCAGCCAATATTATTTGTCTTCGATGTTGCTGAAAAAAAAAA]




>consensus_11331#2
GTGTTTGTGAATAGTGTGGGCTTCTCTTNGAAGTGGTCTNATCATTGTGGTGAACAGCTG
ATGGAGGGTTGACGCTGAGGCTGANTAAGGTGGATGAGAATGTGAAAGTGTGANACGCTT
GTTGTCTGGGGATTTCTNGGCAAGATGTGTATATGATATGGCTGTGCCATGTGTGCCACA
GATANGGAGGACGCCTGCTGGCAAATAGTNTGGGATGGCCCCCCCTCGTTGGATGATGGT
GATGATGGTGAAATAGTCTGAGGCACAGGTTAGGTGAACACCTTTGCTGCATGACTACCG
TGCTGTTGATGTTGATCATCAGAGAGCAGGAAAAGCTTGCGCGGTAGTGTCAATATTCCG
TGCAGTTGCTGCGGCTGGTGTATGTAGGAAATTAAAGTTGGATGATCCCATATCACATAT
ATGTATATTGACAGTTAATTTGTATCAGTTATTTACTGAGTTAAGTCAGCCAATATTATT
TGTCTTCGATGTTGCTGAAAAAAAAAA

consensusID : consensus_11331#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 199
fasta sequence

                              [AATTAAGAAGCTTCAGTTCAAGAAGGAGACCTTGCAAAAGTTGATGCCCCCTTTGATATGTATATGTAAAATCTAGCAAGTCAGTGAACACTTTGCTCATACTACCGTGCTTTGATTTATCATCAGAAGCAGAAAANTTGCGCGGTAGTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU095503             [AATTAAGAAGCTTCAGTTCAAGAAGGAGACCTTGCAAAAGTTGATGCCCCCTTTGATATGTATATGTAAAATCTAGCAAGTCAGTGAACACTTTGCTCATACTACCGTGCTTTGATTTATCATCAGAAGCAGAAAANTTGCGCGGTAGTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_11331#3
AATTAAGAAGCTTCAGTTCAAGAAGGAGACCTTGCAAAAGTTGATGCCCCCTTTGATATG
TATATGTAAAATCTAGCAAGTCAGTGAACACTTTGCTCATACTACCGTGCTTTGATTTAT
CATCAGAAGCAGAAAANTTGCGCGGTAGTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11331#2      ------------------------------------------------------------
consensus_11331#3      ------------------------------------------------------------
consensus_11331#0      TGCTTTTTCTTCTTCTTCTTCTTCTTCTCCATCTCTCCTCTCCTGTTTCTTTCTTCTCTC 60
consensus_11331#1      ------------------------------------------------------------
                                                                                   

consensus_11331#2      ------------------------------------------------------------
consensus_11331#3      ------------------------------------------------------------
consensus_11331#0      CTTGTTGTTGCAGCTGTCCTCTCTCTCTCCTCAAAGAGAAAATTAAGCCACTGGCCCCTT 120
consensus_11331#1      ------------------------------------------------------------
                                                                                   

consensus_11331#2      ------------------------------------------------------------
consensus_11331#3      ------------------------------------------------------------
consensus_11331#0      TAAGATTGACCTGAGATTTCCAGTACACAAGTTGTGTGCATGCAAAGAGAGGCCAAAGCT 180
consensus_11331#1      ------------------------------------------------------------
                                                                                   

consensus_11331#2      ------------------------------------------------------------
consensus_11331#3      ------------------------------------------------------------
consensus_11331#0      AAGCTAGCAAAACACACATTCCTTTCCCACAGCTAGCTTAGCTTGAAGCAAGCAAGAACT 240
consensus_11331#1      ------------------------------------------------------------
                                                                                   

consensus_11331#2      ------------------------------------------------------------
consensus_11331#3      ------------------------------------------------------------
consensus_11331#0      CATCATCTTTGTTTCTACATATCCTTTAATACTCTCCTCTCTGTCACTAGCAGTGATGAA 300
consensus_11331#1      ------------------------------------------------------------
                                                                                   

consensus_11331#2      ------------------------------------------------------------
consensus_11331#3      ------------------------------------------------------------
consensus_11331#0      TAGAGGAGAATTCCAGAGCTCCCTGGTGCAGCAGATGATCTGGAGCGGCAGTAGTACAGG 360
consensus_11331#1      ----GGAGAATTCCAGAGCTCCCTGGTGCAGCAGATGATCTGGAGCGGCAGTAGTACAGG 56
                                                                                   

consensus_11331#2      ------------------------------------------------------------
consensus_11331#3      ------------------------------------------------------------
consensus_11331#0      CACGGCTACCGGCGTCGGCAGCGGCGGCGGCGCCGGCAGTTTGATGGGCAGCTTGAAGCC 420
consensus_11331#1      CACGGCTACCGGCGTCGGCAGCGGCGGCGGCGCCGGCAGTTTGATGGGCAGCTTGAAGCC 116
                                                                                   

consensus_11331#2      ------------------------------------------------------------
consensus_11331#3      ------------------------------------------------------------
consensus_11331#0      ATGCCATGAGGATCAAGAGGCCTCTCCTAACATGCCCTCCTTGTCTTCTCCATCGTTGAT 480
consensus_11331#1      ATGCCATGAGGATCAAGAGGCCTCTCCTAACATGCCCTCCTTGTCTTCTCCATCGTTGAT 176
                                                                                   

consensus_11331#2      ------------------------------------------------------------
consensus_11331#3      ------------------------------------------------------------
consensus_11331#0      CTTCTCGCAGCAGTTTCAGCACAGCTCTCCAGGTCTAGTTCCGATGAACGGCACCGCCGG 540
consensus_11331#1      CTTCTCGCAGCAGTTTCAGCACAGCTCTCCAGGTCTAGTTCCGATGAACGGCACCGCCGG 236
                                                                                   

consensus_11331#2      ------------------------------------------------------------
consensus_11331#3      ------------------------------------------------------------
consensus_11331#0      CGCCGCCGCTTCTCTTCCGAGCTTGCACGACGGCGGCGGCGGCGGCCATGAGAGCAGCAT 600
consensus_11331#1      CGCCGCCGCTTCTCTTCCGAGCTTGCACGACGGCGGCGGCGGCGGCCATGAGAGCAGCAT 296
                                                                                   

consensus_11331#2      ------------------------------------------------------------
consensus_11331#3      ------------------------------------------------------------
consensus_11331#0      GCCGGAGTCATGGAGCCAACTGCTTCTTGGGGGATTAGCTGGAGATCAGGAGAGGTACAG 660
consensus_11331#1      GCCGGAGTCATGGAGCCAACTGCTTCTTGGGGGATTAGCTGGAGATCAGGAGAGGTACAG 356
                                                                                   

consensus_11331#2      ------------GTGTTTGTGAATAGTGTGGGCTTCTCTTNGAAGTGGTCTNATCATTGT 48
consensus_11331#3      ------------------------------------------------------------
consensus_11331#0      CGCCACTGCGGCTCTCCTGTCAAAGGGATTAGAGAATTGGGGAGATCACGCTGCTGCAGC 720
consensus_11331#1      CGTCACTGCGGCTCTCCTGTCAAAGGGATTAGAGAATTGGGGAGATCACGCTGCTGCAGC 416
                                                                                   

consensus_11331#2      GGTGAACAGCTGATGGAGGGTTGACGCTGAGGCTGANTAAGG-----TGGATGAGAATGT 103
consensus_11331#3      ------------------------------------------------------------
consensus_11331#0      TGCAGCCAGTGCATGCATGGTTGGTGGCATGAAGGAGGAGGGCTCCATGGCTCAAGCTGC 780
consensus_11331#1      TGCAGCCAGTGCATGCATGGTTGGTGGCATGAAGGAGGAGGGCTCCATGGCTCAAGCTGC 476
                                                                                   

consensus_11331#2      GAAAGTGTGANACGCTTGTTGTCTGGGGATTTCTNGGCAA--GATGTGTATATGAT-ATG 160
consensus_11331#3      ------------------------------------------------------------
consensus_11331#0      AGCCAC-TGCTGCTGCTGCTGCTTACAGCTTCTATGGGAGCCACCTTGCTGGTGATCATC 839
consensus_11331#1      AGCCAC-TGCTGCTGCTGCTGCTTACAGCTTCTATGGGAGCCACCTTGCTGGTGATCATC 535
                                                                                   

consensus_11331#2      GCTGTGCCATGTGTGCCACAGATANGGAGGACGCCTGCTGGCAAATAGTNTGGGATGGCC 220
consensus_11331#3      -----------------------AATTAAGAAGCTT---------CAGTTCAAGAAGGAG 28
consensus_11331#0      AGCATGAGATCCAAGCAGCAGCAGCAGGAGGAGG-TGCTAGCAACAAGTCTCAGCTGAGC 898
consensus_11331#1      AGCATGAGATCCAAGCAGCAGCAGCAGGAGGAGG-TGCTAGCAACAAGTCTCAGCTGAGC 594
                                                    *  *  *          ***    *  *   

consensus_11331#2      CC--CCCTCGTTGGATGATGGTGATGATGGTGAAATAGTCTGAGGCACAG--GTTAGGTG 276
consensus_11331#3      AC--CTTGCAAAAGTTGATGCCCCCTTTGATATGTATATGTAAAATCTAGCAAGTCAGTG 86
consensus_11331#0      CAGATGCTCATGGCTTCCTCTCCTAGGTCATGCATCACCACCAGCCTCGGCAGCAACATG 958
consensus_11331#1      CAGATGCTCATGGCTTCCTCTCCTAGGTCATGCATCACCACCAGCCTCGGCAGCAACATG 654
                               *      *  *        *  *           *      *        **

consensus_11331#2      AACACCTTTGCTGCATGACTACCGTGCTGTTGATGTTGATCATCAGAGAGCAGGAAAAGC 336
consensus_11331#3      AACAC-TTTGCT-CAT-ACTACCGTGCT-TTGATTT--ATCATCAGA-AGCAGAAAAN-- 137
consensus_11331#0      CTCGACTT--CTCCAACACCGCGGCGCCGCCGGAGC---TCCGGAGCCACCACCACAA-- 1011
consensus_11331#1      CTCGACTT--CTCCAACACCGCGGCGCCGCCGGAGC---TCCGGAGCCACCACCACAA-- 707
                         *   **  ** **  **  * * **    *       **   **  * **  * *   

consensus_11331#2      TTGCGCGGTAGTGTCAATATTCCGTGCAGTTGCTGCGGCTGGTGTATGTAGGAAATTAAA 396
consensus_11331#3      TTGCGCGGTAGTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 197
consensus_11331#0      CTCCGATAATTCATCAGAGTGTAACAGCACAGCGACTGGTTCGGCCCTCAAGAAGGCTAG 1071
consensus_11331#1      CTCCGATAATTCATCAGAGTGTAACAGCACAGCGACTGGTTCGGCCCTCAAGAAGGCTAG 767
                        * **        ***                                 *  **    * 

consensus_11331#2      GTTGGATGATCCCATATCACATATATGTATATTGACAGTTAATTTGTATCAGTTATTTAC 456
consensus_11331#3      AA---------------------------------------------------------- 199
consensus_11331#0      GGTTCAGGCCTCCTCTTCAGCACAATCTACTCTAAAGGTGAGGAAGGAGAGGCTAGGGGA 1131
consensus_11331#1      GGTTCAGGCCTCCTCTTCAGCACAATCTACTCTAAAGGTGAGGAAGGAGAGGCTAGGGGA 827
                                                                                   

consensus_11331#2      TGAGTTAAGTCAGCCAATATTATTTGTCTTCGATGTTGCTGAAAAAAAAAA--------- 507
consensus_11331#3      ------------------------------------------------------------
consensus_11331#0      TAGAATAACTGCACTTCATCAGATTGTATCCCCATT-GGCAAGACTGACACAGCGTCTGT 1190
consensus_11331#1      TAGAATAACTGCACTTCATCAGATTGTATCCCCATTTGGCAAGACTGACACAGCGTCTGT 887
                                                                                   

consensus_11331#2      ------------------------------------------------------------
consensus_11331#3      ------------------------------------------------------------
consensus_11331#0      ACTGCAAGAGACCATTGGCTATATCAGATTCCTCCTGAGTCAAATTGAGGCTCTGAGCTA 1250
consensus_11331#1      ACTGCAAGAGACCATTGGCTATATCAGATTCCTCCTGAGTCAAATTGAGGCTCTGAGCTA 947
                                                                                   

consensus_11331#2      ------------------------------------------------------------
consensus_11331#3      ------------------------------------------------------------
consensus_11331#0      CCCTTACATGGGCGACGCCAACGGGACCGGTCCTATGCAAAATGGACCAGTTGGAGAAAG 1310
consensus_11331#1      CCCTTACATGGGCGACGCCAACGGGACCGGTCCTATGCAAAATGGACCAGTTGGAGAAAG 1007
                                                                                   

consensus_11331#2      ------------------------------------------------------------
consensus_11331#3      ------------------------------------------------------------
consensus_11331#0      GAACCCTGGCCTCTTCCCGGAATACCCTGGCCAGTTGCTAAACCATAATGGCAACACTGG 1370
consensus_11331#1      GAACCCTGGCCTCTTCCCGGAATACCCTGGCCAGTTGCTAAACCATCAAGGTGACACTC- 1066
                                                                                   

consensus_11331#2      ------------------------------------------------------------
consensus_11331#3      ------------------------------------------------------------
consensus_11331#0      AGCACAGCAGCCTGCAGCCCAACCTGAGCAGCAGGGAGCAAACGACGATGGAAAGAAGGA 1430
consensus_11331#1      AGCTTGGC----TGCAAAACGATTTGCAAATTCGTTGTCCCTCTGTAA-GGAAACATTTT 1121
                                                                                   

consensus_11331#2      ------------------------------------------------------------
consensus_11331#3      ------------------------------------------------------------
consensus_11331#0      CCTGAGGAGCCGGGGGCTGTGCCTCGTTCCAGTGTCGTGCACGTCGCACTTTGGAGGGGA 1490
consensus_11331#1      TCTCGCCAGAGATGGATGATGACCTGGTCCAAAGGTACCAAGGGCTAATGAAGGACAGCT 1181
                                                                                   

consensus_11331#2      ------------------------------------------------------------
consensus_11331#3      ------------------------------------------------------------
consensus_11331#0      CAATGCCGCTGACTACTGGGCCCCGGCGCCGCTCGGCGGGATCCTACG-GTAGAATGCAT 1549
consensus_11331#1      CAAAGTTACC-ACTATTTGACCTAAG-GAAGCTCAATGCATCATTGCCTGTAGCTTCTGT 1239
                                                                                   

consensus_11331#2      ------------------------------------------------------------
consensus_11331#3      ------------------------------------------------------------
consensus_11331#0      CGTTGAGATTCGTGCATACAAAG-CGTGGCGGCA--CAGCGAGTACTATAT-GTTGATGC 1605
consensus_11331#1      GCCAAATAATACAGTAAACATCCTCGTTGTGGGCGCCAGCAGTGACTTCATTGTTGATGC 1299
                                                                                   

consensus_11331#2      ------------------------------------------------------------
consensus_11331#3      ------------------------------------------------------------
consensus_11331#0      ATGAGGAGGCTACAGACGAAATAGGTCTCTTAAGAATGGAGAACAGAGTGTGCATTGGGT 1665
consensus_11331#1      -TGAAGGGCTTTCAGAAACTGCAAGATTTT--ATAATGCGCAACC-AGTCTGCATCGA-- 1353
                                                                                   

consensus_11331#2      ------------------------------------------------------------
consensus_11331#3      ------------------------------------------------------------
consensus_11331#0      GCAGGAGTAACGTCGTCATAACATCATGAGCAGTCATTCTCTGGTAAGAAAAAAAATTAC 1725
consensus_11331#1      --AGGGATAGC----CCATGATATGATGCTTGATTGCTC----GTGGGATAAAGGAGC-- 1401
                                                                                   

consensus_11331#2      ------------------------------------------------------------
consensus_11331#3      ------------------------------------------------------------
consensus_11331#0      CTGTAAGGTTGATTGCTCTTGATGCTATGGGAGTGAGAGGTAGCTAGCTATAGTATAATT 1785
consensus_11331#1      ---TGGGATTATCTTGTCATGGC-TGGAGAAACTTACACCAAGATAAATCTTTTGTATTT 1457
                                                                                   

consensus_11331#2      ------------------------------------------------------------
consensus_11331#3      ------------------------------------------------------------
consensus_11331#0      AATTAAGCTTCTGGATCTGCAAATTAAGAAGCTTCAGTTCAAGAAGGAGACCTTGCAAAA 1845
consensus_11331#1      TTTAAGACCT----GTTTCTACATTTTGTAGCCCTTGTTCA----------TTTTCAAAT 1503
                                                                                   

consensus_11331#2      ------------------------------------------------------------
consensus_11331#3      ------------------------------------------------------------
consensus_11331#0      GTTGATGCCCCCTTTGATATGTATATGTAAAATCTAGCAAGTCAGTGAACACTTTGCTCA 1905
consensus_11331#1      GTAGAATCTTTGGTTGATA----------------GGCAGTTTAGTTAGTGCTCTTCAGT 1547
                                                                                   

consensus_11331#2      ------------------------------------------------------------
consensus_11331#3      ------------------------------------------------------------
consensus_11331#0      TACTACCGTGCTTTGATTTATCATCAGAAGCAGAAAAGCTTGCGCGGTAGTGTCAATATT 1965
consensus_11331#1      TTTTTTTGTATTATTATTTG--ATTGAATAAATTTAAGCATGCTTAGTGAA--CAATACT 1603
                                                                                   

consensus_11331#2      ------------------------------------------------------------
consensus_11331#3      ------------------------------------------------------------
consensus_11331#0      CCGTCAGTTGCTCGGCTGGTGTATGTAGGAAATTAAAGTTGATATCCCATATCACATATA 2025
consensus_11331#1      GCATGAAT---------------------------------------------------- 1611
                                                                                   

consensus_11331#2      ------------------------------------------------------------
consensus_11331#3      ------------------------------------------------------------
consensus_11331#0      TGTATATTGACAGTTAATTTGTATCAGTTATTTACTGAGTTAAGTCAGCAATATTATTTG 2085
consensus_11331#1      ------------------------------------------------------------
                                                                                   

consensus_11331#2      ------------------------------------------------------------
consensus_11331#3      ------------------------------------------------------------
consensus_11331#0      TCTTCGATGTTGCTGAATTATTTGTGTGCATCTATATATGGATTTTCTGTATGTCAATCG 2145
consensus_11331#1      ------------------------------------------------------------
                                                                                   

consensus_11331#2      -----
consensus_11331#3      -----
consensus_11331#0      ACAGG 2150
consensus_11331#1      -----