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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11346#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 959 fasta sequence
[GCGTGGAGACGAGAGGGAGAGGCAGCCATTTTTTCTTTTTTTTTTCGCTCGTCGGAATTTCGAATCGGGAAACCTAACGGCGAGCGGCGCCTCCACCTCGCCGGAATCCACCACCGATGGAGGCCGCTCCGGCGGCGGCGGCGGGGAGGTACGGCAACCTCGAAAGGTCCTTCAAGCTCGCCGCCCGCTCCGTCCTCACCGCCTGCTCCCGCGAGGATGTGAAGAGGGCTTTCCCGTCGTTTACGGATGCGGAGAGGGAACGCTTGTACCAGATGTTCATTTACGTGATCAAGTCTCTGCACAGCAACATAGAGGAGGAATTTGACATACCCTGCCAAGAACTACAAGTTGCTGCTGCCCTTGAAAAGATAGATCAGTTTGTTGAA-GAACAAAAGCTGGATGTGCTGTCTTCAGACAAGACTAACATTGAAGACACCAAGCAAATGATATCAAAGGCTAAGAAAGATGAAGTTGAATACCTGAAAAGTCTAATAGAAGAGGTTGAAGAGAAAAACAATGCCATGAAGGCTCGAATTGAACTCTTGAAGAAAGATGATGATTTGGCTGCAGGAAAACAAGTCCTTGAGAAGCTGATGCAATGCAATTCTGCACTCTACAATGGCCTTTGAGTTTCAGATTTTTAGCCGATCCGATGATTATTTACTTGCTGGAGTGAAAAGACATCTGTTGGATAGCTGTGTAGTTTTAGATAGGATGTTGATCCA-GGAATCGAGATGGATGCCCTGTAATGTGAAACAAATACTGCAGTCCGTATGTTGGATATGGTTGCCA-CCTTGTTACCTCCCAGCTGCATTCTGTTTCTTTTAAGTCTGTGCTTTCTATATGGTATCTATGGCTTGGTTTGGGGATCGTCCCGGATAAATGTGCATTGTACTGGTACCCATGTTCATCCTTTTGCACATGAGATATATTTGGCTTGTGTTCACAGGCCACAAATT]
[+] EMBL AK121633 [GCGTGGAGACGAGAGGGAGAGGCAGCCATTTTTTC TTTTTTTTTCGCTCGTCGGAATTTCGAATCGGGAAACCTAACGGCGAGCGGCGCCTCCACCTCGCCGGAATCCACCACCGATGGAGGCCGCTCCGGCGGCGGCGGCGGGGAGGTACGGCAACCTCGAAAGGTCCTTCAAGCTCGCCGCCCGCTCCGTCCTCACCGCCTGCTCCCGCGAGGATGTGAAGAGGGCTTTCCCGTCGTTTACGGATGCGGAGAGGGAACGCTTGTACCAGATGTTCATTTACGTGATCAAGTCTCTGCACAGCAACATAGAGGAGGAATTTGACATACCCTGCCAAGAACTACAAGTTGCTGCTGCCCTTGAAAAGATAGATCAGTTTGTTGAA GAACAAAAGCTGGATGTGCTGTCTTCAGACAAGACTAACATTGAAGACACCAAGCAAATGATATCAAAGGCTAAGAAAGATGAAGTTGAATACCTGAAAAGTCTAATAGAAGAGGTTGAAGAGAAAAACAATGCCATGAAGGCTCGAATTGAACTCTTGAAGAAAGATGATGATTTGGCTGCAGGAAAACAAGTCCTTGAGAAGCTGATGCAATGCAATTCTGCACTCTACAATGGCCTTTGAGTTTCAGATTTTTAGCCGATCCGATGATTATTTACTTGCTGGAGTGAAAAGACATCTGTTGGATAGCTGTGTAGTTTTAGATAGGATGTTGATCCA GGAATCGAGATGGATGCCCTGTAATGTGAAACAAATACTGCAGTCCGTATGTTGGATATGGTTGCCA CCTTGTTACCTCCCAGCTGCATTCTGTTTCTTTTAAGTC ]
[+] EMBL CA766946 [ atTTTTTTCTTTTTTTTTTCGCTCGTCGGAATTTCGAATCGGGAAACCTAACGGCGAGCGGCGCCTCCACCTCGCCGGAATCCACCACCGATGGAGGCCGCTC CGGCGGCGGCGGGGAGGTACGGCAACCTCGAAAGGTCCTTCAAGCTCGCCGCCCGCTCCGTCCTCACCGCCTGCTCCCGCGAGGATGTGAAGAGGGCTTTCCCGTCGTTTACGGATGCGGAGAGGGAACGCTTGTACCAGATGTTCATTTACGTGATCAAGTCTCTGCACAGCAACATAGAGGAGGAATTTGACATACCCTGCCAAGAACTACAAGTTGCTGCTGCCCTTGAAAAGATAGATCAGTTTGTTGAA GAACAAAAGCTGGATGTGCTGTCTTCAGACAAGACTAACATTGAAGACACCAAGCAAATGATATCAAAGGCTAAGAAAGATGAAGTTGAATACCTGAAAAGTCTAATAGAAGAGGTTGAAGAGAAAAACAATGCCATGAAGGCTCGAATTGAACTCTTGAAGAAAGATGATGATTTGGCTGCAGGAAAACAAGTCCTTGAGAAGCTGATTCAATGCAATTCTGCACTCTACAATGGCCTTTGAGTTTCAGATTTTTAGCCGATCCGATGATTATTTACTTGCTGGAGTGAAAAGACATCTGNTGGATAGCTGNGTAGTTTTAGATAGGATGNTGATCCAGGGAATCGAGATGGATGCCCTGTAATGNGNAACAAATACTGCAGTCCGTATGTTGGATATGGTTGNCACCCTTGNTACCTNCCAGCTGCATTCTGGTTCTTTTAAGGCTGGGCTTTCTTTTTGGGATCTATGGCTTGGTTTGGGGATC ]
[+] EMBL CB634429 [ tTTTTTCTCTTCGCTCGTCGGAATTTCGAATCGGGAAACCTAACGGCGAGCGGCGCCTCCACCTCGCCGGAATCCACCACCGATGGAGGCCGCTCCGGCGGCGGCGGCGGGGAGGTACGGCAACCTCGAAAGGTCCTTCAAGCTCGCCGCCCGCTCCGTCCTCACCGCCTGCTCCCGCGAGGATGTGAAGAGGGCTTTCCCGTCGTTTACGGATGCGGAGAGGGAACGCTTGTACCAGATGTTCATTTACGTGATCAAGTCTCTGCACAGCAACATAGAGGAGGAATTTGACATACCCTGCCAAGAACTACAAGTTGCTGCTGCCCTTGAAAAGATAGATCAGTTTGTTGAA GAACAAAAGCTGGATGTGCTGTCTTCAGACAAGACTAACATTGAAGACACCAAGCAAATGATATCAAAGGCTAAGAAAGATGAAGTTGAATACCTGAAAAGTCTAATAGAAGAGGTTGAAGAGAAAAACAATGCCATGAAGGCTCGAATTGAACTCTTGAAGAAAGATGATGATTTGGCTGCAGGAAAACAAGTCCTTGAGAAGCTGATGCAATGCAATTCTGCACTCTACAATGGCCTTTGAGTTTCAGATTTTTAGCCGATCCGATGATTATTTACTTGCTGGAGTGAAAAGACATCTGTTGGATAGCTGTGTAGTTT ]
[+] EMBL C27799 [ CGGAATTTCGAATCGGGAAACCTAACGGCGAGCGGCGCCTCCACCTCGCCGGAATCCACCACCGATGGAGGCCGCTCCGGC GCGGCGGCGGGGAGGTACGGCAACCTCGAAAGGTCCTTCAAGCTCGCCGCCCGCTCCGTCCTCACCGCCTGCTCCCGCGAGGATGTGAAGAGGGCTTTCCCGTCGTTTACGGATGCGGAGAGGGAACGCTTGTACCAGATGTTCATTTACGTGATCAAGTCTCTGCACAGCAACATAGAGGAGGAATTTGACATACCCTGCCAAGAACTACAAGTTGCTGCTGCCCTTGAAAAGATAGATCAGTTTGTTGAAGGACCAAAAGCTGGATGTGCTGTCTTTAAGCAAGNCTTACATTTNAGGCACCAAGCAAATGNTATCAAAGG TTAGGAAGTTGAAG ]
[-] EMBL CB634430 [ GGAGAGGGAACGCTTGTACCAGATGTTCATTTACGTGATCAAGTCTCTGCACAGCAACATAGAGGAGGAATTTGACATACCCTGCCAAGAACTACAAGTTGCTGCTGCCCTTGAAAAGATAGATCAGTTTGTTGAA GAACAAAAGCTGGATGTGCTGTCTTCAGACAAGACTAACATTGAAGACACCAAGCAAATGATATCAAAGGCTAAGAAAGATGAAGTTGAATACCTGAAAAGTCTAATAGAAGAGGTTGAAGAGAAAAACAATGCCATGAAGGCTCGAATTGAACTCTTGAAGAAAGATGATGATTTGGCTGCAGGAAAACAAGTCCTTGAGAAGCTGATGCAATGCAATTCTGCACTCTACAATGGCCTTTGAGTTTCAGATTTTTAGCCGATCCGATGATTATTTACTTGCTGGAGTGAAAAGACATCTGTTGGATAGCTGTGTAGTTTTAGATAGGATGTTGATCCA GGAATCGAGATGGATGCCCTGTAATGTGAAACAAATACTGCAGTCCGTATGTTGGATATGGTTGCCA CCTTGTTACCTCCCAGCTGCATTCTGTTTCTTTTAAGTCTGTGCTTTCTATATGGTATCTATGGCTT GTTTTGTGATCGTCCCGGATAAATGTGCATTGTACTGGTACCCATGTTCATCCTTTTGCACATGAGATATATTTGGCTTGTGTTCACAGGCCACAAATT]
[+] EMBL AU092691 [ GATGTGCTGTCTTCAGACAAGACTAACATTGAAGACACCAAGCAAATGATATCAAAGGCTAAGAAAGATGAAGTTGAATACCTGAAAAGTCTAATAGAAGAGGTTGAAGAGAAAANCAATGCCATGAAGGCTCGAATTGAACTCTTGAAGAAAGATGATGATTTGGCTGCAGGAAAACAAGTCCTTGAGAAGCTGATGCAATGCAATTCTGCACTCTACAATGGCCTTTGAGTTTCAGATTTTTAGCCGATCCGATGATTATTTACTTGCTGGAGTGAAAAGACATCTGTTGGATAGCTGTGTAGTTTTAGATAGGATGTTGATCCA GGAATCGAGATGGATGCCCTGTAATGTGAAACAAATACTGCAGTCCGTATGTTGGATATGGTTGCCA CCTTGTTACCTCCCAGCTGCATTCTGTTTCTTTTAAGTCTGTGCTTTCTATATGGTATCTATGGCTTGTTTTGtgaaaaaaa ]
consensusID : consensus_11346#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 678 fasta sequence
[CCCCCGGGGATAGGAAGGGCCTCCCCCTTTTTTAGGGTTAGGAAAGGGAACCTTTTTTCCAAAGTTTCTTTAGGGGAACAATGTTTCCCCAACCCCAAAAAGAGGAATTTTCCATCCCCCCCCCAAAACCCAAGTGGGGCGCCCCCTTAAAAAATAGCTCCGTTTTTTAAAGACCAAAAACGGAATGGCGGTTTTCCAGCCAAGGTTACCTTGAGGCCCCCCAGGCCAATGATTTCAAAAGGCTTAGAAAAGATGAAGTGAAATACTGAAAAGTTAGATAGAAAGGGTGAAAAGAAAAACAATGCCCATGAAGGCTCGAATTGACCTCTGAAAGAAAGATGATGATTTGGCTGCAGGAAAACAAGTCCTTGAGAAGCTGATTCAATGCATTTCTGCACTCTACAATGGCCTNTGAGTTTCAGATTNTTAGCCGATCCGATGATTATTTACTGNCTGGAGTGAAAAGACATCTGTTGGATAGCTGTGTAGTTTTAGATAGGATGTTGATCCAGGAATCGAGATGGATGCCCTGTAATGTGAAACAAATACTGCAGTCCGTATGTTGGATATGGTTTGCCACCCTTGTTCCCTCCCCAGCGCCACTTCTGTGTCTTTAGTCTGGGCCGTTCTCAAGGGATCTATGGGCNTGTTTGTGATCGTCCAAAAAAAAAAAAAAAA]
[-] EMBL CA761003 [CCCCCGGGGATAGGAAGGGCCTCCCCCTTTTTTAGGGTTAGGAAAGGGAACCTTTTTTCCAAAGTTTCTTTAGGGGAACAATGTTTCCCCAACCCCAAAAAGAGGAATTTTCCATCCCCCCCCCAAAACCCAAGTGGGGCGCCCCCTTAAAAAATAGCTCCGTTTTTTAAAGACCAAAAACGGAATGGCGGTTTTCCAGCCAAGGTTACCTTGAGGCCCCCCAGGCCAATGATTTCAAAAGGCTTAGAAAAGATGAAGTGAAATACTGAAAAGTTAGATAGAAAGGGTGAAAAGAAAAACAATGCCCATGAAGGCTCGAATTGACCTCTGAAAGAAAGATGATGATTTGGCTGCAGGAAAACAAGTCCTTGAGAAGCTGATTCAATGCATTTCTGCACTCTACAATGGCCTNTGAGTTTCAGATTNTTAGCCGATCCGATGATTATTTACTGNCTGGAGTGAAAAGACATCTGTTGGATAGCTGTGTAGTTTTAGATAGGATGTTGATCCAGGAATCGAGATGGATGCCCTGTAATGTGAAACAAATACTGCAGTCCGTATGTTGGATATGGTTTGCCACCCTTGTTCCCTCCCCAGCGCCACTTCTGTGTCTTTAGTCTGGGCCGTTCTCAAGGGATCTATGGGCNTGTTTGTGATCGTCCAAAAAAAAAAAAAAAA]
consensusID : consensus_11346#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 254 fasta sequence
[ATCCGATGATTATTTACTTGCTGGAGTGAAAAGACATCTGTTGGATAGCCTGTGTAGTTTTAGATAGGATTGGTTTGATCCCAGGAATCGAGATGGATGCCCTGTAATGTGAAACCAATACTGCAGTCCCGGGTTAAATGTTGATATGTTGCCACCCTTGTTACCTCCCAGCTGGGCACTTTTTCTGTTTCCTTTTAAGTCTGTGCTTTCTATATGGTATCTATGGCTTGTTTTGTGATCGTCCCGGATAAAAA]
[+] EMBL BI795943 [ATCCGATGATTATTTACTTGCTGGAGTGAAAAGACATCTGTTGGATAGCCTGTGTAGTTTTAGATAGGATTGGTTTGATCCCAGGAATCGAGATGGATGCCCTGTAATGTGAAACCAATACTGCAGTCCCGGGTTAAATGTTGATATGTTGCCACCCTTGTTACCTCCCAGCTGGGCACTTTTTCTGTTTCCTTTTAAGTCTGTGCTTTCTATATGGTATCTATGGCTTGTTTTGTGATCGTCCCGGATAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11346#0 GCGTGGAGACGAGAGGGAGAGGCAGCCATTTTTTCTTTTTTTTTTCGCTCGTCGGAATTT 60
consensus_11346#2 ------------------------------------------------------------
consensus_11346#1 ------------------------------------------------------------
consensus_11346#0 CGAATCGGGAAACCTAACGGCGAGCGGCGCCTCCACCTCGCCGGAATCCACCACCGATGG 120
consensus_11346#2 ------------------------------------------------------------
consensus_11346#1 ------------------------------------------------------------
consensus_11346#0 AGGCCGCTCCGGCGGCGGCGGCGGGGAGGTACGGCAACCTCGAAAGGTCCTTCAAGCTCG 180
consensus_11346#2 ------------------------------------------------------------
consensus_11346#1 ------------------------------------------------------------
consensus_11346#0 CCGCCCGCTCCGTCCTCACCGCCTGCTCCCGCGAGGATGTGAAGAGGGCTTTCCCGTCGT 240
consensus_11346#2 ------------------------------------------------------------
consensus_11346#1 -----------------------------CCCCCGGGGATAGGAAGGGCCTCCCCCTTTT 31
consensus_11346#0 TTACGGATGCGGAGAGGGAACGCTTGTACCAGATGTTCATTTACGTGATCAAGTCTCTGC 300
consensus_11346#2 ------------------------------------------------------------
consensus_11346#1 TTA-GGGTTAGGAAAGGGAACCTTTTTTCCAAAGTTTCTTTAGGGGAACAATGTTTCCCC 90
consensus_11346#0 ACAGCAACATAGAGGAGGAATTTGACATACCCTGCCAAGAACTACAAGTTGCTGCTGCCC 360
consensus_11346#2 ------------------------------------------------------------
consensus_11346#1 AACCCCA---AAAAGAGGAATTTTCCATCCCCCCCCCAAAAC--CCAAGTGGGGCGCCCC 145
consensus_11346#0 TTGAAAAGATAGATCAGTTTGTTGAAGAACAAAAGCTGGATGTGCTGTCTTCAGACAAGA 420
consensus_11346#2 ------------------------------------------------------------
consensus_11346#1 CTTAAAAAATAGCTCCGTTTTTTAAAGACCAAAAACGGAATGGCGGTTTTCCAGCCAAGG 205
consensus_11346#0 CTAACATTGAAGACACCAAGCAAATGATATCAAAGG--CTAAGAAAGATGAAGTTGAATA 478
consensus_11346#2 ------------------------------------------------------------
consensus_11346#1 TTACCTTGAGGCCCCCCAGGCCAATGATTTCAAAAGGCTTAGAAAAGATGAAGTGAAATA 265
consensus_11346#0 CCTGAAAAGTCTAATAGAAGAGGTTGAAGAGAAAAACAATGCCATGAAGGCTCGAATTGA 538
consensus_11346#2 ------------------------------------------------------------
consensus_11346#1 C-TGAAAAGTTAGATAGAAAGGGTGAAAAGAAAAACAATGCCCATGAAGGCTCGAATTGA 324
consensus_11346#0 ACTCTTGAAGAAAGATGATGATTTGGCTGCAGGAAAACAAGTCCTTGAGAAGCTGATGCA 598
consensus_11346#2 ------------------------------------------------------------
consensus_11346#1 CCTCTGAAAGAAAGATGATGATTTGGCTGCAGGAAAACAAGTCCTTGAGAAGCTGATTCA 384
consensus_11346#0 ATGCAATTCTGCACTCTACAATGGCCTTTGAGTTTCAGATTTTTAGCCGATCCGATGATT 658
consensus_11346#2 -------------------------------------------------ATCCGATGATT 11
consensus_11346#1 ATGCATTTCTGCACTCTACAATGGCCTNTGAGTTTCAGATTNTTAGCCGATCCGATGATT 444
***********
consensus_11346#0 ATTTACTTGCTGGAGTGAAAAGACATCTGTTGGATAGC-TGTGTAGTTTTAGATAGGATG 717
consensus_11346#2 ATTTACTTGCTGGAGTGAAAAGACATCTGTTGGATAGCCTGTGTAGTTTTAGATAGGATT 71
consensus_11346#1 ATTTACTGNCTGGAGTGAAAAGACATCTGTTGGATAGC-TGTGTAGTTTTAGATAGGATG 503
******* ***************************** ********************
consensus_11346#0 ---TTGATCC-AGGAATCGAGATGGATGCCCTGTAATGTGAAACAAATACTGCAGTCCGT 773
consensus_11346#2 GGTTTGATCCCAGGAATCGAGATGGATGCCCTGTAATGTGAAACCAATACTGCAGTCC-C 130
consensus_11346#1 ---TTGATCC-AGGAATCGAGATGGATGCCCTGTAATGTGAAACAAATACTGCAGTCCGT 559
******* ********************************* *************
consensus_11346#0 ATGTTGGATATGG-----TTGCCACC-TTGTTACCTCCCAGCTGCA------TTCTGTTT 821
consensus_11346#2 GGGTTAAATGTTGATATGTTGCCACCCTTGTTACCTCCCAGCTGGGCACTTTTTCTGTTT 190
consensus_11346#1 ATGTTGGATATGGT----TTGCCACCCTTGTTCCCTCCCCAGCGCCA----CTTCTGTGT 611
*** ** * * ******** ***** ****** * ****** *
consensus_11346#0 C-TTTTAAGTCTGTGCTTTCTATATGGTATCTATGGCTTGGTTTGGGGATCGTCCCGGAT 880
consensus_11346#2 CCTTTTAAGTCTGTGCTTTCTATATGGTATCTATGGCTTG-TTTTGTGATCGTCCCGGAT 249
consensus_11346#1 C---TTTAGTCTGGGCCGTTCTCAAGGGATCTATGGGCNTGTTT-GTGATCGTCCAAAAA 667
* ** ****** ** * * ** ******** *** * ******** *
consensus_11346#0 AAATGTGCATTGTACTGGTACCCATGTTCATCCTTTTGCACATGAGATATATTTGGCTTG 940
consensus_11346#2 AAAAA------------------------------------------------------- 254
consensus_11346#1 AAAAAAAAAAA------------------------------------------------- 678
***
consensus_11346#0 TGTTCACAGGCCACAAATT 959
consensus_11346#2 -------------------
consensus_11346#1 -------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||