cluster # 11355

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Oryza sativa
cluster # 11355 cluster # 11355 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11355#0 length = 975 sequences # 7

consensus_11355#1 length = 491 sequences # 1

consensusID : consensus_11355#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 975
fasta sequence

                              [GAGTAGAAAACAGATTACAGGTTACAGGTTTCACCCCTGAGCCAAACGTGAGCCCGCTACACTGACAACAACAAGCTCATCGCCAACCCGCTACTGAAGCAGCAGCCTACCAGCAATGGCGTTGCCGCTGCTCAAGTCGTCCCCCCACTTCTCTGCTCTTCACTCCGCGAACAGAGCCCAGCTCCATGGCCGCTGCCGTGCAACGCTCGGTGGATTCCATGACCCGAGGTCCAACTCCAGCCGTTGCAAGAAATCGGCCGGGAGGGGTTCAGTGAAGGCGAACGCGTCCCCGTTGGACGTGGTGACGCTGATGGTGACGATGGTGGAGCACGTCGACCTGCAGA-GGGACTACGTCGTGCACAAGTCGATCTGGCATCTCAGCGACGCCGCCCTCAAGAGCGTCTATACCTTCTACGCCTTCTTCACAGTCTGGGGCATCTGCTTCTTTGCGTCCATGAAGGATCCTTTCTACGACAGTGAGGCGTACAGGGGACAA-GGGGGTGACGGCACCGTGCACTGGTACTATGACCGGCAAGAGGACCTGGAGGCGTCTGCAAGAGAGGAGCTCCTGAGGGAGGAGCTACTCGAGGAGATCGAGCAGAGGGTCGGAGGGCTCAGAGAACTCGAGGAAGCAGCCAAGGAGGAGCAGCTTACAAACTGATGGATGAATGAGAGATTGCGCATGGATGGATGACTGCATGATCATGGCGCGATGCGGCTGCATTCTGTAATACCGTACAGAGCGGCTGTGTAATAGCAAGATACACAGTTGCCTGATAGCGCCTGTAAATGTTGGCATCAGACTCAAAAGGAAAGCAAATAGGTGCTCCGTCTGCATGAATGCATTATATTGCATTTGTAGTGTAGGCTAAAAGAAGGAATGTACTACTCCATGTTAATCAAAGAACCTGTACCGTTCACCATGGTGGATATTGCTTCCAAAATATATAAATTGTGTAAATCGACTGAAAAAAA]

[+] EMBL CF301710             [GAGTAGAAAACAGATTACAGGTTACAGGTTTCACCCCTGAGCCAAACGTGAGCCCGCTACACTGACAACAACAAGCTCATCGCCAACCCGCTACTGAAGCAGCAGCCTACCAGCAATGGCGTTGCCGCTGCTCAAGTCGTCCCCCCACTTCTCTGCTCTTCACTCCGCGAACAGAGCCCAGCTCCATGGCCGCTGCCGTGCAACGCTCGGTGGATTCCATGACCCGAGGTCCAACTCCAGCCGTTGCAAGAAATCGGCCGGGAGGGGTTCAGTGAAGGCGAACGCGTCCCCGTTGGACGTGGTGACGCTGATGGTGACGATGGTGGAGCACGTCGACCTGCAGA GGGACTACGTCGTGCACAAGTCGATCTGGCATCTCAGCGACGCCGCCCTCAAGAGCGTCTATACCTTCTACGCCTTCTTCACAGTCTGGGGCATCTGCTTCTTTGCGTCCATGAAGGATCCTTTCTACGACAGTGAGGCGTACAGGGGACAAGGGGGGTGACGGCACCGTGCACTGGTACTATGACCGGCAAGAGGACCTGG                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AK064898             [                                             ACGTGAGCCCGCTACACTGACAACAACAAGCTCATCGCCAACCCGCTACTGAAGCAGCAGCCTACCAGCAATGGCGTTGCCGCTGCTCAAGTCGTCCCCCCACTTCTCTGCTCTTCACTCCGCGAACAGAGCCCAGCTCCATGGCCGCTGCCGTGCAACGCTCGGTGGATTCCATGACCCGAGGTCCAACTCCAGCCGTTGCAAGAAATCGGCCGGGAGGGGTTCAGTGAAGGCGAACGCGTCCCCGTTGGACGTGGTGACGCTGATGGTGACGATGGTGGAGCACGTCGACCTGCAGA GGGACTACGTCGTGCACAAGTCGATCTGGCATCTCAGCGACGCCGCCCTCAAGAGCGTCTATACCTTCTACGCCTTCTTCACAGTCTGGGGCATCTGCTTCTTTGCGTCCATGAAGGATCCTTTCTACGACAGTGAGGCGTACAGGGGACAA GGGGGTGACGGCACCGTGCACTGGTACTATGACCGGCAAGAGGACCTGGAGGCGTCTGCAAGAGAGGAGCTCCTGAGGGAGGAGCTACTCGAGGAGATCGAGCAGAGGGTCGGAGGGCTCAGAGAACTCGAGGAAGCAGCCAAGGAGGAGCAGCTTACAAACTGATGGATGAATGAGAGATTGCGCATGGATGGATGACTGCATGATCATGGCGCGATGCGGCTGCATTCTGTAATACCGTACAGAGCGGCTGTGTAATAGCAAGATACACAGTTGCCTGATAGCGCCTGTAAATGTTGGCATCAGACTCAAAAGGAAAGCAAATAGGTGCTCCGTCTGCATGAATGCATTATATTGCATTTGTAGTGTAGGCTAAAAGAAGGAATGTACTACTCCATGTTAATCAAAGAACCTGTACCGTTCACCATGGTGGATATTGCTTCCAAAATATATAAATTGTGT                 ]
[+] EMBL CF299337             [                                                  AGCCCGCTACACTGACAACAACAAGCTCATCGCCAACCCGCTACTGAAGCAGCAGCCTACCAGCAATGGCGTTGCCGCTGCTCAAGTCGTCCCCCCACTTCTCTGCTCTTCACTCCGCGAACAGAGCCCAGCTCCATGGCCGCTGCCGTGCAACGCTCGGTGGATTCCATGACCCGAGGTCCAACTCCAGCCGTTGCAAGAAATCGGCCGGGAGGGGTTCAGTGAAGGCGAACGCGTCCCCGTTGGACGTGGTGACGCTGATGGTGACGATGGTGGAGCACGTCGACCTGCAGA GGGACTACGTCGTGCACAAGTCGATCTGGCATCTCAGCGACGCCGCCCTCAAGAGCGTCTATACCTTCTACGCCTTCTTCACAGTCTGGGGCATCTGCTTCTTTGCGTCCATGAAGGATCCTTTCTACGACAGTGAGGCGTACAGGGGACAA GGGGGTGACGGCACCGTGCACTGGTACTATGACCGGCAAGAGGACCTGGAGGCGTCTGCAAGAGAGGAGCTCCTGAGGGAGGAGCTACTCGAG                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AK104827             [                                                    CCCGCTACACTGACAACAACAAGCTCATCGCCAACCCGCTACTGAAGCAGCAGCCTACCAGCAATGGCGTTGCCGCTGCTCAAGTCGTCCCCCCACTTCTCTGCTCTTCACTCCGCGAACAGAGCCCAGCTCCATGGCCGCTGCCGTGCAACGCTCGGTGGATTCCATGACCCGAGGTCCAACTCCAGCCGTTGCAAGAAATCGGCCGGGAGGGGTTCAGTGAAGGCGAACGCGTCCCCGTTGGACGTGGTGACGCTGATGGTGACGATGGTGGAGCACGTCGACCTGCAGA GGGACTACGTCGTGCACAAGTCGATCTGGCATCTCAGCGACGCCGCCCTCAAGAGCGTCTATACCTTCTACGCCTTCTTCACAGTCTGGGGCATCTGCTTCTTTGCGTCCATGAAGGATCCTTTCTACGACAGTGAGGCGTACAGGGGACAA GGGGGTGACGGCACCGTGCACTGGTACTATGACCGGCAAGAGGACCTGGAGGCGTCTGCAAGAGAGGAGCTCCTGAGGGAGGAGCTACTCGAGGAGATCGAGCAGAGGGTCGGAGGGCTCAGAGAACTCGAGGAAGCAGCCAAGGAGGAGCAGCTTACAAACTGATGGATGAATGAGAGATTGCGCATGGATGGATGACTGCATGATCCTGGCGCGATGCGGCTGCATTCTGTAATACCGTACAGAGCGGCTGTGTAATAGCAAGATACACAGTTGCCTGATAGCGCCTGTAAATGTTGGCATCAGACTCAAAAGGAAAGCAAATAGGTGCTCCGTCTGCATGAATGCATTATATTGCATTTGTAGTGTAGGCTAAAAGAAGGAATGTACTACTCCATGTTAATCAAAGAACCTGT                                                               ]
[+] EMBL CF308682             [                                                                  AACAACAAGTTCATCGCCAACCCGCTACTGAAGCAGCAGCCTACCAGCAATGGCGTTGCCGCTGCTCAAGTCGTCCCCCCACTTCTCTGCTCTTCACTCCGCGAACAGAGCCCAGCTCCATGGCCGCTGCCGTGCAACGCTCGGTGGATTCCATGACCCGAGGTCCAACTCCAGCCGTTGCAAGAAATCGGCCGGGAGGGGTTCAGTGAAGGCGAACGCGTCCCCGTTGGACGTGGTGACGCTGATGGTGACGATGGTGGAGCACGTCGACCTGCAGAGGGGACTACGTCGTGCACAAGTCGATCTGGCATCTCAGCGACGCCGCCCTCAAGAGCGTCTATACCTTCTACGCCTTCTTCACAGTCTGGGGCATCTGCTTCTTTGCGTCCATGAAGGATCCTTTCTACGACAGTGAGGCGTACAGGGGACAAGGGGGGTGACGGCACCGTGCACTGGTACTATGACCGGCAAGAGGACCTGGAGGCGTCTGCAAGAGAGGAGCTCCTGAGGGAGGAGCTAC                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CF308683             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GAAGGATCCTTTCTACGACAGTGAGGCGTACAGGGGACAA GGGGGTGACGGCACCGTGCACTGGTACTATGACCGGCAAGAGGACCTGGAGGCGTCTGCAAGAGAGGAGCTCCTGAGGGAGGAGCTACTCGAGGAGATCGAGCAGAGGGTCGGAGGGCTCAGAGAACTCGAGGAAGCAGCCAAGGAGGAGCAGCTTACAAACTGATGGATGAATGAGAGATTGCGCATGGATGGATGACTGCATGATCATGGCGCGATGCGGCTGCATTCTGTAATACCGTACAGAGCGGCTGTGTAATAGCAAGATACACAGTTGCCTGATAGCGCCTGTAAATGTTGGCATCAGACTCAAAAGGAAAGCAAATAGGTGCTCCGTCTGCATGAATGCATTATATTGCATTTGTAGTGTAGGCTAAAAGAAGGAATGTACTACTCCATGTTAATCAAAGAACCTGTACCGTTCACCATGGTGGATATTGCTTCCAAAATATATAAATTGTGTAAATCGACTGAAAAAAA]
[-] EMBL CF301711             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GACCTGGAGGCGTCTGCAAGAGAGGAGCTCCTGAGGGAGGAGCTACTCGAGGAGATCGAGCAGAGGGTCGGAGGGCTCAGAGAACTCGAGGAAGCAGCCAAGGAGGAGCAGCTTACAAACTGATGGATGAATGAGAGATTGCGCATGGATGGATGACTGCATGATCATGGCGCGATGCGGCTGCATTCTGTAATACCGTACAGAGCGGCTGTGTAATAGCAAGATACACAGTTGCCTGATAGCGCCTGTAAATGTTGGCATCAGACTCAAAAGGAAAGCAAATAGGTGCTCCGTCTGCATGAATGCATTATATTGCATTTGTAGTGTAGGCTAAAAGAAGGAATGTACTACTCCATGTTAATCAAAGAACCTGTACCGTTCACCATGGTGGATATTGCTTCCAAAATAaaata                        ]




>consensus_11355#0
GAGTAGAAAACAGATTACAGGTTACAGGTTTCACCCCTGAGCCAAACGTGAGCCCGCTAC
ACTGACAACAACAAGCTCATCGCCAACCCGCTACTGAAGCAGCAGCCTACCAGCAATGGC
GTTGCCGCTGCTCAAGTCGTCCCCCCACTTCTCTGCTCTTCACTCCGCGAACAGAGCCCA
GCTCCATGGCCGCTGCCGTGCAACGCTCGGTGGATTCCATGACCCGAGGTCCAACTCCAG
CCGTTGCAAGAAATCGGCCGGGAGGGGTTCAGTGAAGGCGAACGCGTCCCCGTTGGACGT
GGTGACGCTGATGGTGACGATGGTGGAGCACGTCGACCTGCAGAGGGACTACGTCGTGCA
CAAGTCGATCTGGCATCTCAGCGACGCCGCCCTCAAGAGCGTCTATACCTTCTACGCCTT
CTTCACAGTCTGGGGCATCTGCTTCTTTGCGTCCATGAAGGATCCTTTCTACGACAGTGA
GGCGTACAGGGGACAAGGGGGTGACGGCACCGTGCACTGGTACTATGACCGGCAAGAGGA
CCTGGAGGCGTCTGCAAGAGAGGAGCTCCTGAGGGAGGAGCTACTCGAGGAGATCGAGCA
GAGGGTCGGAGGGCTCAGAGAACTCGAGGAAGCAGCCAAGGAGGAGCAGCTTACAAACTG
ATGGATGAATGAGAGATTGCGCATGGATGGATGACTGCATGATCATGGCGCGATGCGGCT
GCATTCTGTAATACCGTACAGAGCGGCTGTGTAATAGCAAGATACACAGTTGCCTGATAG
CGCCTGTAAATGTTGGCATCAGACTCAAAAGGAAAGCAAATAGGTGCTCCGTCTGCATGA
ATGCATTATATTGCATTTGTAGTGTAGGCTAAAAGAAGGAATGTACTACTCCATGTTAAT
CAAAGAACCTGTACCGTTCACCATGGTGGATATTGCTTCCAAAATATATAAATTGTGTAA
ATCGACTGAAAAAAA

consensusID : consensus_11355#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 491
fasta sequence

                              [GGCGTACAGGGGACAAGGGGGTGACGGCACCGTGCACTGGTACTATGACCGGCAAGAGGACCTGGAGGCGTCTGCAAGAGAGGAGCTCCTGAGGGAGGAGCTACTCGAGGAGATCGAGCAGAGGGTCGGAGGGCTCAGAGAACTCGAGGAAGCAGCCAAGGAGGAGCAGCTTACAAACTGATGGATGAATGAGAGATTGCGCATGGATGGATGACTGCATGATCATGGCGCGATGCGGCTGCATTCTGTAATACCGTACAGAGCGGCTGTGTAATAGCAAGATACACAGTTGCCTGATAGCGCCTGTAAATGTTGGCATCAGACTCAAAAGGAAAGCAAATAGGTGCTCCGTCTGCATGAATGCATTATATTGCATTTGTAGTGTAGGCTAAAAGAAGGAATGTACTACTCCATGTTAATCAAAGAACCTGTACCGTTCAAAAAAAAAAAAAAAAACAATGTCATGCCGTTACGTAGCGTATCGTTGACAG]

[-] EMBL CF299338             [GGCGTACAGGGGACAAGGGGGTGACGGCACCGTGCACTGGTACTATGACCGGCAAGAGGACCTGGAGGCGTCTGCAAGAGAGGAGCTCCTGAGGGAGGAGCTACTCGAGGAGATCGAGCAGAGGGTCGGAGGGCTCAGAGAACTCGAGGAAGCAGCCAAGGAGGAGCAGCTTACAAACTGATGGATGAATGAGAGATTGCGCATGGATGGATGACTGCATGATCATGGCGCGATGCGGCTGCATTCTGTAATACCGTACAGAGCGGCTGTGTAATAGCAAGATACACAGTTGCCTGATAGCGCCTGTAAATGTTGGCATCAGACTCAAAAGGAAAGCAAATAGGTGCTCCGTCTGCATGAATGCATTATATTGCATTTGTAGTGTAGGCTAAAAGAAGGAATGTACTACTCCATGTTAATCAAAGAACCTGTACCGTTCAAAAAAAAAAAAAAAAACAATGTCATGCCGTTACGTAGCGTATCGTTGACAG]




>consensus_11355#1
GGCGTACAGGGGACAAGGGGGTGACGGCACCGTGCACTGGTACTATGACCGGCAAGAGGA
CCTGGAGGCGTCTGCAAGAGAGGAGCTCCTGAGGGAGGAGCTACTCGAGGAGATCGAGCA
GAGGGTCGGAGGGCTCAGAGAACTCGAGGAAGCAGCCAAGGAGGAGCAGCTTACAAACTG
ATGGATGAATGAGAGATTGCGCATGGATGGATGACTGCATGATCATGGCGCGATGCGGCT
GCATTCTGTAATACCGTACAGAGCGGCTGTGTAATAGCAAGATACACAGTTGCCTGATAG
CGCCTGTAAATGTTGGCATCAGACTCAAAAGGAAAGCAAATAGGTGCTCCGTCTGCATGA
ATGCATTATATTGCATTTGTAGTGTAGGCTAAAAGAAGGAATGTACTACTCCATGTTAAT
CAAAGAACCTGTACCGTTCAAAAAAAAAAAAAAAAACAATGTCATGCCGTTACGTAGCGT
ATCGTTGACAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11355#0      GAGTAGAAAACAGATTACAGGTTACAGGTTTCACCCCTGAGCCAAACGTGAGCCCGCTAC 60
consensus_11355#1      ------------------------------------------------------------
                                                                                   

consensus_11355#0      ACTGACAACAACAAGCTCATCGCCAACCCGCTACTGAAGCAGCAGCCTACCAGCAATGGC 120
consensus_11355#1      ------------------------------------------------------------
                                                                                   

consensus_11355#0      GTTGCCGCTGCTCAAGTCGTCCCCCCACTTCTCTGCTCTTCACTCCGCGAACAGAGCCCA 180
consensus_11355#1      ------------------------------------------------------------
                                                                                   

consensus_11355#0      GCTCCATGGCCGCTGCCGTGCAACGCTCGGTGGATTCCATGACCCGAGGTCCAACTCCAG 240
consensus_11355#1      ------------------------------------------------------------
                                                                                   

consensus_11355#0      CCGTTGCAAGAAATCGGCCGGGAGGGGTTCAGTGAAGGCGAACGCGTCCCCGTTGGACGT 300
consensus_11355#1      ------------------------------------------------------------
                                                                                   

consensus_11355#0      GGTGACGCTGATGGTGACGATGGTGGAGCACGTCGACCTGCAGAGGGACTACGTCGTGCA 360
consensus_11355#1      ------------------------------------------------------------
                                                                                   

consensus_11355#0      CAAGTCGATCTGGCATCTCAGCGACGCCGCCCTCAAGAGCGTCTATACCTTCTACGCCTT 420
consensus_11355#1      ------------------------------------------------------------
                                                                                   

consensus_11355#0      CTTCACAGTCTGGGGCATCTGCTTCTTTGCGTCCATGAAGGATCCTTTCTACGACAGTGA 480
consensus_11355#1      ------------------------------------------------------------
                                                                                   

consensus_11355#0      GGCGTACAGGGGACAAGGGGGTGACGGCACCGTGCACTGGTACTATGACCGGCAAGAGGA 540
consensus_11355#1      GGCGTACAGGGGACAAGGGGGTGACGGCACCGTGCACTGGTACTATGACCGGCAAGAGGA 60
                       ************************************************************

consensus_11355#0      CCTGGAGGCGTCTGCAAGAGAGGAGCTCCTGAGGGAGGAGCTACTCGAGGAGATCGAGCA 600
consensus_11355#1      CCTGGAGGCGTCTGCAAGAGAGGAGCTCCTGAGGGAGGAGCTACTCGAGGAGATCGAGCA 120
                       ************************************************************

consensus_11355#0      GAGGGTCGGAGGGCTCAGAGAACTCGAGGAAGCAGCCAAGGAGGAGCAGCTTACAAACTG 660
consensus_11355#1      GAGGGTCGGAGGGCTCAGAGAACTCGAGGAAGCAGCCAAGGAGGAGCAGCTTACAAACTG 180
                       ************************************************************

consensus_11355#0      ATGGATGAATGAGAGATTGCGCATGGATGGATGACTGCATGATCATGGCGCGATGCGGCT 720
consensus_11355#1      ATGGATGAATGAGAGATTGCGCATGGATGGATGACTGCATGATCATGGCGCGATGCGGCT 240
                       ************************************************************

consensus_11355#0      GCATTCTGTAATACCGTACAGAGCGGCTGTGTAATAGCAAGATACACAGTTGCCTGATAG 780
consensus_11355#1      GCATTCTGTAATACCGTACAGAGCGGCTGTGTAATAGCAAGATACACAGTTGCCTGATAG 300
                       ************************************************************

consensus_11355#0      CGCCTGTAAATGTTGGCATCAGACTCAAAAGGAAAGCAAATAGGTGCTCCGTCTGCATGA 840
consensus_11355#1      CGCCTGTAAATGTTGGCATCAGACTCAAAAGGAAAGCAAATAGGTGCTCCGTCTGCATGA 360
                       ************************************************************

consensus_11355#0      ATGCATTATATTGCATTTGTAGTGTAGGCTAAAAGAAGGAATGTACTACTCCATGTTAAT 900
consensus_11355#1      ATGCATTATATTGCATTTGTAGTGTAGGCTAAAAGAAGGAATGTACTACTCCATGTTAAT 420
                       ************************************************************

consensus_11355#0      CAAAGAACCTGTACCGTTCACCATGGTGGATATTGCTTCCAAAATATATAAATTGTGTAA 960
consensus_11355#1      CAAAGAACCTGTACCGTTCAAAAAAAAAAAAAAAAACAATGTCATGCCGTTACGTAGCGT 480
                       ********************  *      * *           **      *    *   

consensus_11355#0      ATCGACTGAAAAAAA 975
consensus_11355#1      ATCG-TTGACAG--- 491
                       ****  *** *