|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11358#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 831 fasta sequence
[TAAATCGAGAAATCGTTGCGATCTGAAGCAAGGCGGCCGCTCGGCGCTCGCGATCTTCGTCAAGATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATCACCCTCGAGGTTGAGTCCTCTGATACAATTGACAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCATTCCACCTGACCAGCAACGTCTCATCTTTGCTGGCAAGCAACTAGAGGATGGCCGCACCCTCGCGGATTACAACATCCAGAAGGAGTCCACCCCCCACCTTGTCCTTCGCCTCAGGGGAGGCATGCAGATCTTTGTGAAGACCTTGACAGGAAAGACCATCACT--CTTG-CGGTCGAGTCCTCGGACAAGATCGACAATGTGAAGGCGAAGATTCAGGACAAGGGAGGGAATTCCCCCGG-ACCAGCAGCGCCTCATCTTTGCAGACAAGCAGCTCGAGGATGGGACGTACACTGGCTNATTACAACATTCAGAAGGTNGTCCACCTTGCNCCTGGTGCTCCGCCTCCGTGTGGCCGGTTCGGTTCAGATGTTTTGTACGCCTGGTGGGCGGTGGCTTTGCGCAAATGANGTTTGTGATGGTGTTNGTTTCAAGTTCCCATTTGGGTTTCAGTCATCGTCGTGACACGATATATGTTAAGAACAACTCTNGTTAGCATCCTGCTTGTTCTTGATACTTGTCCCTGTTTTTCAGAAAAATCAATCCTGCTTATTCTGGATATGTGTTCTTTATTTCCNGAAAACGGTATGCTTGTGCCATTAGACTTTGCTCAAGGNACAAGNNGTTCTAGAATTTCAGTGANATATTGGTGCTAAAAAAAAAAA]
[+] EMBL CF336159 [TAAATCGAGAAATCGTTGCGATCTGAAGCAAGGCGGCCGCTCGGCGCTCGCGATCTTCGTCAAGATGCAGATCTTTGTGAAGACACTCACTGGC AGACCATCACCCTCGAGGTTGAGTCCTCTGATACAATTGACAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCATTCCACCTGACCAGCAACGTCTCATCTTTGCTGGCAAGCAACTAGAGGATGGCCGCACCCTCGCGGATTACAACATCCAGAAGGAGTCCACCCCCCACCTTGTCCTTCGCCTCAGGGGAGGCATGCAGATCTTTGTGAAGACCTTGACAGGAAAGACCATCACTNNNTTG CGGTCGAGTCCTCGGACAAGATCGACAATGTGAAGGCGAAGATTCAGGACAAGGGAGGGAATTCCCCCGG ACCAGCAGCGCCTCATCTTTGCAGACAAGCAGCTCGAGGATGGGACGTACACTGGCT ]
[+] EMBL CF336669 [TAAATCGAGAAATCGTTGCGATCTGAAGCAAGGCGGCCGCTCGGCGCTCGCGATCTTCGTCAAGATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATCACCCTCGAGGTTGAGTCCTCTGATACAATTGACAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCATTCCACCTGACCAGCAACGTCTCATCTTTGCTGGCAAGCAACTAGAGGATGGCCGCACCCTCGCGGATTACAACATCCAGAAGGAGTCCACCCCCCACCTTGTCCTTCGCCTCAGGGGAGGCATGCAGATCTTTGTGAAGACCTTGACAGGAAAGACCATCACT CTTG CGGTCGAGTCCTCGGACAAGATCGACAATGTGAAGGCGAAGATTCAGGACAA GGAGGGAATTCCCCCGG ACCAGCAGCGCCTCATCTTTGCAGACAAGCAGCTCGAGGATGGGACGTACACTGGCT ]
[+] EMBL CF336230 [TAAATCGAGAAATCGTTGCGATCTGAAGCAAGGCGGCCGCTCGGCGCTCGCGATCTTCGTCAAGATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATCACCCTCGAGGTTGAGTCCTCTGATACAATTGACAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCATTCCACCTGACCAGCAACGTCTCATCTTTGCTGGCAAGCAACTAGAGGATGGCCGCACCCTCGCGGATTACAACATCCAGAAGGAGTCCACCCCCCACCTTGTCCTTCGCCTCAGGGGAGGCATGCAGATCTTTGTGAAGACCTTGACAGGAAAGACCATCACT CTTG CGGTCGAGTCCTCGGACAAGATCGACAATGTGAAGGCGAAGATTCAGGACAAGGGAGGGAATTCCCCCGG ACCAGCAGCGCCTCATCTTTGCAGACAA ]
[+] EMBL AU176502 [ TGAAGACACTCACTGGCAAGACCATCACCCTCGAGGTTGAGTCCTCTGATACAATTGACAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCATTCCACCTGACCAGCAACGTCTCATCTTTGCTGGCAAGCAACTAGAGGATGGCCGCACCCTCGCGGATTACAACATCCAGAAGGAGTCCACCCTCCACCTTGTCCTTCGCCTCAGGGGAGGCATGCAGATCTTTGTGAAGACCTTGACAGGAAAGACCATCACT CTTG CGGTCGAGTCCTCGGACAAG ]
[+] EMBL C97178 [ GAAGACCTTGACAGGAAAGACCATCACT CTTGCCGGTCGAGTCCTCGGACAAGATCGACAATGTGAAGGCNAAGATTCAGGACAA GGNGGGAATTCCCCCGGAACCAGCAGCGCCTCATCTTTGCAGACAAGCNGCTCGAGGAT GGACGTACACTGGCTNATTACAACATTCAGAAGGTNGTCCACCTTGCNCCTGGTGCTCCGCCTCCGTGTGGCCGGTTCGGTTCAGATGTTTTGTACGCCTGGTGGGCGGTGGCTTTGCGCAAATGANGTTTGTGATGGTGTTNGTTTCAAGTTCCCATTTGGGTTTCAGTCATCGTCGTGACACGATATATGTTAAGAACAACTCTNGTTAGCATCCTGCTTGTTCTTGATACTTGTCCCTGTTTTTCAGAAAAATCAATCCTGCTTATTCTGGATATGTGTTCTTTATTTCCNGAAAACGGTATGCTTGTGCCATTAGACTTTGCTCAAGGNACAAGNNGTTCTAGAATTTCAGTGANATATTGGTGCTAAAAAAAAAAA]
consensusID : consensus_11358#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 472 fasta sequence
[GGCATGCAGATCTTTGTGAAGACCTTGACAGGAAAGACCATCACTCTTGCGGTCGAGTCCTCGGACAAGATCGACAATGTGAAGGCGAAGATTCAGGACAAGGAGGGAATT-CCCCCGGACCAGCAGCGCCTCATTTTTGCAGACAAGCAGCTCGAGGATGGACGTACACTGGCTGATTACAACATTCAGAAGGAGTCCCCCTTGCACCTGGTGCTCCGCCTCCGTGTGGCCGGTAGGTTCAGATGTTTTGCTACGCCTGGTGGGCGGTGGCTTTGCGCAAATGAAGTTTGTGATGGTGTTAGTTTCAAGTTCCCATTTGGGTTTCAGTCATCGTCGTGACACGATATATGTTAAGAACAACTCTAGTTAGCATCCTGCTTGTTCTTGATACTTGTCCCTGTTTTTCAGAAAAATCAATCCTGCTTATTCTGG-ATATGTGTTCTTTATTTCCAGAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF336231 [GGCATGCAGATCTTTGTGAAGACCTTGACAGGAAAGACCATCACTCTTGCGGTCGAGTCCTCGGACAAGATCGACAATGTGAAGGCGAAGATTCAGGACAAGGAGGGAATT CCCCCGGACCAGCAGCGCCTCATTTTTGCAGACAAGCAGCTCGAGGATGGACGTACACTGGCTGATTACAACATTCAGAAGGAGTCCCCCTTGCACCTGGTGCTCCGCCTCCGTGTGGCCGGTAGGTTCAAATGTTTTGCTACGCCTGGTGGGCGGTGGCTTTGCGCAAATGAAGTTTGTGATGGTGTTAGTTTCAAGTTCCCATTTGGGTTTCAGTCATCGTCGTGACACGATATATGTTAAGAACAACTCTAGTTAGCATCCTGCTTGTTCTTGATACTTGTCCCTGTTTTTCAGAAAAATCAATCCTGCTTATTCTGGAATATGTGTTCTTTATTTCCAGAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF336670 [ CATGCAGATCTTTGTGAAGACCTTGACAGGAAAGACCATCACTCTTGCGGTCGAGTCCTCGGACAAGATCGACAATGTGAAGGCGAAGATTCAGGACAAGGAGGGAATT CCCCCGGACCAGCAGCGCCTCATTTTTGCAGACAAGCAGCTCGAGGATGGACGTACACTGGCTGATTACAACATTCAGAAGGAGTCCCCCTTGCACCTGGTGCTCCGCCTCCGTGTGGCCGGTAGGTTCAGATGTTTTGCTACGCCTGGTGGGCGGTGGCTTTGCGCAAATGAAGTTTGTGATGGTGTTAGTTTCAAGTTCCCATTTGGGTTTCAGTCATCGTCGTGACACGATATATGTTAAGAACAACTTTAGTTAGCATCCTGCTTGTTCTTGATACTTGTCCCTGTTTTTCAGAAAAATCAATCCTGCTTATTCTGG ATATGTGTTCTTTATTTCCAGAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF336160 [ CATGCAGATCTTTGTGAAGACCTTGACAGGAAAGACCATCACTCTTGCGGTCGAGTCCTCGGACAAGATCGACAATGTGAAGGCGAAGATTCAGGACAAGGAGGGAATTCCCCCCGGACCAGCAGCGCCTCATCTTTGCAGACAAGCAGCTCGAGGATGGACGTACACTGGCTGATTACAACATTCAGAAGGAGTCCACCTTGCACCTGGTGCTCCGCCTCCGTGTGGCCGGTAGGTTCAGATGTTTTGCTACGCCTGGTGGGCGGTGGCTTTGCGCAAATGAAGTTTGTGATGGTGTTAGTTTCAAGTTCCCATTTGGGTTTCAGTCATCGTCGTGACACGATATATGTTAAGAACAACTCTAGTTAGCATCCTGCTTGTTCTTGATACTTGTCCCTGTTTTTCAGAAAAATCAATCCTGCTTATTCTGG ATATGTGTTCTTTATTTCCAGAAAAAAAAAAAAAAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11358#0 TAAATCGAGAAATCGTTGCGATCTGAAGCAAGGCGGCCGCTCGGCGCTCGCGATCTTCGT 60
consensus_11358#1 ------------------------------------------------------------
consensus_11358#0 CAAGATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATCACCCTCGAGGTTGAGTC 120
consensus_11358#1 ------------------------------------------------------------
consensus_11358#0 CTCTGATACAATTGACAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCATTCCACCTGA 180
consensus_11358#1 ------------------------------------------------------------
consensus_11358#0 CCAGCAACGTCTCATCTTTGCTGGCAAGCAACTAGAGGATGGCCGCACCCTCGCGGATTA 240
consensus_11358#1 ------------------------------------------------------------
consensus_11358#0 CAACATCCAGAAGGAGTCCACCCCCCACCTTGTCCTTCGCCTCAGGGGAGGCATGCAGAT 300
consensus_11358#1 -------------------------------------------------GGCATGCAGAT 11
***********
consensus_11358#0 CTTTGTGAAGACCTTGACAGGAAAGACCATCACTCTTGCGGTCGAGTCCTCGGACAAGAT 360
consensus_11358#1 CTTTGTGAAGACCTTGACAGGAAAGACCATCACTCTTGCGGTCGAGTCCTCGGACAAGAT 71
************************************************************
consensus_11358#0 CGACAATGTGAAGGCGAAGATTCAGGACAAGGGAGGGAATTCCCCCGGACCAGCAGCGCC 420
consensus_11358#1 CGACAATGTGAAGGCGAAGATTCAGGACAAGG-AGGGAATTCCCCCGGACCAGCAGCGCC 130
******************************** ***************************
consensus_11358#0 TCATCTTTGCAGACAAGCAGCTCGAGGATGGGACGTACACTGGCTNATTACAACATTCAG 480
consensus_11358#1 TCATTTTTGCAGACAAGCAGCTCGAGGATGG-ACGTACACTGGCTGATTACAACATTCAG 189
**** ************************** ************* **************
consensus_11358#0 AAGGTNGTCCACCTTGCNCCTGGTGCTCCGCCTCCGTGTGGCCGGTTCGGTTCAGATGTT 540
consensus_11358#1 AAGG-AGTCCCCCTTGCACCTGGTGCTCCGCCTCCGTGTGGCCGGTA-GGTTCAGATGTT 247
**** **** ****** **************************** ************
consensus_11358#0 TTG-TACGCCTGGTGGGCGGTGGCTTTGCGCAAATGANGTTTGTGATGGTGTTNGTTTCA 599
consensus_11358#1 TTGCTACGCCTGGTGGGCGGTGGCTTTGCGCAAATGAAGTTTGTGATGGTGTTAGTTTCA 307
*** ********************************* *************** ******
consensus_11358#0 AGTTCCCATTTGGGTTTCAGTCATCGTCGTGACACGATATATGTTAAGAACAACTCTNGT 659
consensus_11358#1 AGTTCCCATTTGGGTTTCAGTCATCGTCGTGACACGATATATGTTAAGAACAACTCTAGT 367
********************************************************* **
consensus_11358#0 TAGCATCCTGCTTGTTCTTGATACTTGTCCCTGTTTTTCAGAAAAATCAATCCTGCTTAT 719
consensus_11358#1 TAGCATCCTGCTTGTTCTTGATACTTGTCCCTGTTTTTCAGAAAAATCAATCCTGCTTAT 427
************************************************************
consensus_11358#0 TCTGGATATGTGTTCTTTATTTCCNGAAAACGGTATGCTTGTGCCATTAGACTTTGCTCA 779
consensus_11358#1 TCTGGATATGTGTTCTTTATTTCCAGAAAAAAAAAAAAAAAAAAA--------------- 472
************************ ***** *
consensus_11358#0 AGGNACAAGNNGTTCTAGAATTTCAGTGANATATTGGTGCTAAAAAAAAAAA 831
consensus_11358#1 ----------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||