cluster # 1136

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Oryza sativa
cluster # 1136 cluster # 1136 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1136#0 length = 394 sequences # 1

consensus_1136#1 length = 270 sequences # 1

consensusID : consensus_1136#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 394
fasta sequence

                              [GAGAGCTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTACCTGCCACCGCTCACCGTGGNNGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAGTGGGTGCCCTGCCTCGAGTTCAGCANNNTCGGATTTGTCTANNGTGNNNACCACAGGTCCCCTGGATACTANNNNNNCNNNTNCTNNNNNATGTGGANNCTGCCCATGTTCNNNTGCNNN]

[+] EMBL CF196031             [GAGAGCTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTACCTGCCACCGCTCACCGTGGNNGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAGTGGGTGCCCTGCCTCGAGTTCAGCANNNTCGGATTTGTCTANNGTGNNNACCACAGGTCCCCTGGATACTANNNNNNCNNNTNCTNNNNNATGTGGANNCTGCCCATGTTCNNNTGCNNN]




>consensus_1136#0
GAGAGCTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCGTCGGCCACCACCGT
CGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCGCCGCTCCGGCAA
CTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCAGGTGTGGCCGAT
TGAGGGCATCAAGAAGTTCGAGACCCTCTCCTACCTGCCACCGCTCACCGTGGNNGACCT
CCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAGTGGGTGCCCTGCCTCGAGTTCAGCAN
NNTCGGATTTGTCTANNGTGNNNACCACAGGTCCCCTGGATACTANNNNNNCNNNTNCTN
NNNNATGTGGANNCTGCCCATGTTCNNNTGCNNN

consensusID : consensus_1136#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 270
fasta sequence

                              [CGAGCAAAGAAGGAGAGAGCTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAANNNCGAGACCCTCTCCTACCTGCCACCGCTCACCGTGGNNNNNNNNCTGANNNNNNNCGAG]

[+] EMBL CF197399             [CGAGCAAAGAAGGAGAGAGCTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAANNNCGAGACCCTCTCCTACCTGCCACCGCTCACCGTGGNNNNNNNNCTGANNNNNNNCGAG]




>consensus_1136#1
CGAGCAAAGAAGGAGAGAGCTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCG
TCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCC
CGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATG
CAGGTGTGGCCGATTGAGGGCATCAAGAANNNCGAGACCCTCTCCTACCTGCCACCGCTC
ACCGTGGNNNNNNNNCTGANNNNNNNCGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1136#0      --------------GAGAGCTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCG 46
consensus_1136#1      CGAGCAAAGAAGGAGAGAGCTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCG 60
                                    **********************************************

consensus_1136#0      TCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCC 106
consensus_1136#1      TCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCC 120
                      ************************************************************

consensus_1136#0      CGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATG 166
consensus_1136#1      CGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATG 180
                      ************************************************************

consensus_1136#0      CAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTACCTGCCACCGCTC 226
consensus_1136#1      CAGGTGTGGCCGATTGAGGGCATCAAGAANNNCGAGACCCTCTCCTACCTGCCACCGCTC 240
                      *****************************   ****************************

consensus_1136#0      ACCGTGGNNGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAGTGGGTGCCCTGC 286
consensus_1136#1      ACCGTGGNNNNNNNNCTGANNNNNNNCGAG------------------------------ 270
                      *********      ****       ****                              

consensus_1136#0      CTCGAGTTCAGCANNNTCGGATTTGTCTANNGTGNNNACCACAGGTCCCCTGGATACTAN 346
consensus_1136#1      ------------------------------------------------------------
                                                                                  

consensus_1136#0      NNNNNCNNNTNCTNNNNNATGTGGANNCTGCCCATGTTCNNNTGCNNN 394
consensus_1136#1      ------------------------------------------------