These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11363#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 834 fasta sequence [AGCTAGGGTTTCTCAGGTCCTCGGCAATGTCGTCGGCGAAAACCCTAGCGCGGGCGGGCTCCTCCCTCCTCGGCCGCCTCCTCGCGTCCCCGTCTCCCCTTCGCGCGGGGCTGCCTCCGCCGTCGCTGCTCTCCAGGATCCAGCCGCTCGTCCCCCCGCCGCCGCCGCCGCAGCCGCGGCCGGAGACGACGGTGGAGGCCTACGAGGCGCAGGCGGTGGCGAGGCTGAGCTCGCTCCCAGGAGAGATCTCCTTCCCCTGCGGCCTCCCCTCGCTCCGGTTCATCATCGAAGACGGAAAGGATCCTGTTGCTAATGAACCCCTGGAGCTAC-TTCCAAAAAGAACTTATC-AGCCCAGTACCATCAAGCGGAAAAGAACCCATGGGTTTCTTACACGAAAATCAACCAAAGGTGGGCGTAAGGTGATTGCGCGCAGGATTGCCAAGGGCAGGCAC-AGAATTTCAGTGTAACGAAAAACCCATAGCTCTTCTGCACCTTCACATCATCCATTTCGTGAACATCTAAGAGCTCACAGTTTCTGCACCCTTTACCGCCCTCACTGTGGAGGGACAGCTGCAGCAGAAGCAGTAGTGCCATGTACCGAATTATCTTTACGAAATAAACTAGGCAATTGGACTGATTGGCCAAAAAAATACACATCCAACATCTGCACAATCGCAGCTGGCAGGGTTCAACTTCAAACAGCCGTCTGTGTGCGCTTCTTGGCTCTCCTAACCACTGCCTTCTGTCCTTGAATCCATTTCAACCATTCTTTTGCTAGTAGTTTATTCGTGAACACTAATCATGATCTCTCATCTGGACGCCAAAAAAAAAAAA] [+] EMBL OSC25191 [AGCTAGGGTTTCTCAGGTCCTCGGCAATGTCGTCGGCGAAAACCCTAGCGCGGGCGGGCTCCTCCCTCCTCGGCCGCCTCCTCGCGTCCCCGTCTCCCCTTCGCGCGGGGCTGCCTCCGCCGTCGCTGCTCTCCAGGATCCAGNCGCTCGTCCCCCCGCNGNCGACGNCGCAGCCGTGNACGGAGACG ] [+] EMBL AU101607 [ TAGGGTTTCTCAGGTCCTCGGCAATGTCGTCGGCGAAAACCCTAGCGCGGGCGGGCTCCTCCCTCCTCGGCCGCCTCCTCGCGTCCCCGTCTCCCCTTCGCGCGGGGCTGCCTCCGCCGTCGCTGCTCTCCAGGATCCAGCCGCTCGTCCCCCCGCCGCCGCCGCCGCAGCCGCGGCCGGAGACGACGGTGGAGGCCTACGAGGCGCAGGCGGTGGCGAGGCTGAGCTCGCTCCCAGGAGAGATCTCCTTCCCCTGCGGCCTCCCCTCGCTCCGGTTCATCATCGAAGACGGAAAGGATCCTGTTGCTAATGAACCCCTGGAGCTAC TTCCAAAAAGAACTTATC AGCCCAGTACCATCAAGCGGAAAAGAACCCATGGGTTTCTTACACGAAAATCAACCAAAGGTGGGCGAAAGGTGATTGCGCGCAGGATTGCCAAGGGCAGGCACAAGAATTTCAGTGTAACGAAAAACCCATAGCTCTT TG ACCTTCACATCATCCATTTCGTGAACATCTAAGAGCTCACAGT ] [+] EMBL AU093099 [ GGTTTCTCAGGTCCTCGGCAATGTCGTCGGCGAAAACCCTAGCGCGGGCGGGCTCCTCCCTCCTCGGCCGCCTCCTCGCGTCCCCGTCTCCCCTTCGCGCGGGGCTGCCTCCGCCGTCGCTGCTCTCCAGGATCCAGCCGCTCGTCCCCCCGCCGCCGCCGCCGCAGCCGCGGCCGGAGACGACGGTGGAGGCCTACGAGGCGCAGGCGGTGGCGAGGCTGAGCTCGCTCCCAGGAGAGATCTCCTTCCCCTGCGGCCTCCCCTCGCTCCGGTTCATCATCGAAGACGGAAAGGATCCTGTTGCTAATGAACCCCTGGAGCTAC TTTCAAAAAGAACTTATCAAGCCCAGTACCATCAAGCGGAAAAGAACCCATGGGTTTCTTACA ] [+] EMBL AK121299 [ GGCAATGTCGTCGGCGAAAACCCTAGCGCGGGCGGGCTCCTCCCTCCTCGGCCGCCTCCTCGCGTCCCCGTCTCCCCTTCGCGCGGGGCTGCCTCCGCCGTCGCTGCTCTCCAGGATCCAGCCGCTCGTCCCCCCGCCGCCGCCGCCGCAGCCGCGGCCGGAGACGACGGTGGAGGCCTACGAGGCGCAGGCGGTGGCGAGGCTGAGCTCGCTCCCAGGAGAGATCTCCTTCCCCTGCGGCCTCCCCTCGCTCCGGTTCATCATCGAAGACGGAAAGGATCCTGTTGCTAATGAACCCCTGGAGCTAC TTCCAAAAAGAACTTATC AGCCCAGTACCATCAAGCGGAAAAGAACCCATGGGTTTCTTACACGAAAATCAACCAAAGGTGGGCGTAAGGTGATTGCGCGCAGGATTGCCAAGGGCAGGCAC AGAATTTCAGTGTAACGAAAAACCCATAGCTCTTCTGCACCTTCACATCATCCATTTCGTGAACATCTAAGAGCTCACAGTTTCTGCACCCTTTACCGCCCTCACTGTGGAGGGACAGCTACAGCAGAAGCAGTAGTGCCATGTACCGAATTATCTTTACGAAATAAACTAGGCAATTGGACTGATTGG ] [+] EMBL AU161048 [ GAAAACCCTAGCGCGGGCGGGCTCCTCCCTCCTCGGCCGCCTCCTCGCGTCCCCGTCTCCCCTTCGCGCGGGGCTGCCTCCGCCGTCGCTGCTCTCCAGGATCCAGCCGCTCGTCCCCCCGCCGCCGCCGCCGCAGCCGCGGCCGGAGACGACGGTGGAGGCCTACGAGGCGCAGGCGGTGGCGAGGCTGAGCTCGCTCCCAGGAGAGATCTCCTTCCCCTGCGG CTCCCCTCGCTCCGGTTCATCATCGAAGACGGAAAGGATCCTGTTGCTAATGAACCCCTGGAGCTACTTTCAAAAAAGAACTTATC AGCCCA ] [+] EMBL AU161049 [ CCAGCCGCTGGTCCCCCCGCNGCAGCCGCAGCAGCCGCGGCCGAAGACGACGGTGAAGG CTACGAGGCGCAGNCGGTGGCGAGGCTNAGCTCGCTCCCAGGAGAGATCTCCTTCCCCTGCGGCCTCCCCTCGCTCCGGTTCATCATCGAAGACGGAAAGGATCCTGTTGCTAATGAACCCCTGGAGCTAC TTCCAAAAAGAACTTATC AGCCCAGTACCATCAAGCGGAAAAGAACCCATGGGTTTCTTACACGAAAATCAACCAAAGGTGGGCGTAAGGTGATTGCGCGCAGGATTGCCAAGGGCAGGCAC AGAATTTCAGTGTAACGAAAAACCCATAGCTCTTCTGCACCTTCACATCATCCATTTCGTGAACATCTAAGAGCTCACAGTTTCTGCACCCTTTACCGCCCTCACTGTGGAGGGACAGCTGCAGCAGAAGCAGTAGTGCCATGTACCGAATTATCTTTACGAAATAAACTAGGCAATTGGACTGATTGGCCAAAAAAA ] [+] EMBL AU101608 [ CCCAGAANAGATCTCCTTCCCNTGCGGCCTCCCCTCGCTCCGGTTCATCATCGAAG CGGAAAGGATCCTGTTGCTAATGAACCCCTGGAGCTAC TTCCAAAAAGAACTTATC AGCCCAGTACCATCAAGCGGAAAAGAACCCATGGGTTTCTTACACGAAAATCAACCAAAGGTGGGCGTAAGGTGATTGCGCGCAGGATTGCCAAGGGCAGGCAC AGAATTTCAGTGTAACGAAAAACCCATAGCTCTTCTGCACCTTCACATCATCCATTTCGTGAACATCTAAGAGCTCACAGTTTCTGCACCCTTTACCGCCCTCACTGTGGAGGGACAGCTGCAGCAGAAGCAGTAGTGCCATGTACCGAATTATCTTTACGAAATAAACTAGGCAATTGGACTGATTGGCCAAATTTTTACACATCCAACATCTGCACAATCGCAGCTGGCAGGGTTCAACTTCAAACAGCCGTCTGTGTGCGCTTCTTGGCTCTCCTAACCACTGCCTTCTGTCCTTGAATCCATTTCAACCATTCTTTTGCTAGTAGTTTATTCGTGAACACTAATCATGATCTCTCATCTGGACGCCAAAAAAAAAAAA] consensusID : consensus_11363#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 213 fasta sequence [GGCTTCCCACCCAACTGGTGTTTCGTTAGCACCCCGTGTGTACCGNCCCCGTCGATCCTTGCCTGGNAGGGAGAACAGCCGTGCCAGCAGAAGCAGTAGTGCCATGTACCGAATTATCTTTACGAAATAAACTAGGCAATTGGACTGATTGGCCAAATTTTTACACATCCAACATCTGCACCNTCGCAGCTGGCAGGGTTCAACTTTCAAAAA] [+] EMBL BQ907995 [GGCTTCCCACCCAACTGGTGTTTCGTTAGCACCCCGTGTGTACCGNCCCCGTCGATCCTTGCCTGGNAGGGAGAACAGCCGTGCCAGCAGAAGCAGTAGTGCCATGTACCGAATTATCTTTACGAAATAAACTAGGCAATTGGACTGATTGGCCAAATTTTTACACATCCAACATCTGCACCNTCGCAGCTGGCAGGGTTCAACTTTCAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11363#0 AGCTAGGGTTTCTCAGGTCCTCGGCAATGTCGTCGGCGAAAACCCTAGCGCGGGCGGGCT 60 consensus_11363#1 ------------------------------------------------------------ consensus_11363#0 CCTCCCTCCTCGGCCGCCTCCTCGCGTCCCCGTCTCCCCTTCGCGCGGGGCTGCCTCCGC 120 consensus_11363#1 ------------------------------------------------------------ consensus_11363#0 CGTCGCTGCTCTCCAGGATCCAGCCGCTCGTCCCCCCGCCGCCGCCGCCGCAGCCGCGGC 180 consensus_11363#1 ------------------------------------------------------------ consensus_11363#0 CGGAGACGACGGTGGAGGCCTACGAGGCGCAGGCGGTGGCGAGGCTGAGCTCGCTCCCAG 240 consensus_11363#1 ------------------------------------------------------------ consensus_11363#0 GAGAGATCTCCTTCCCCTGCGGCCTCCCCTCGCTCCGGTTCATCATCGAAGACGGAAAGG 300 consensus_11363#1 ------------------------------------------------------------ consensus_11363#0 ATCCTGTTGCTAATGAACCCCTGGAGCTACTTCCAAAAAGAACTTATCAGCCCAGTACCA 360 consensus_11363#1 ------------------------------------------------------------ consensus_11363#0 TCAAGCGGAAAAGAACCCATGGGTTTCTTACACGAAAATCAACCAAAGGTGGGCGTAAGG 420 consensus_11363#1 ------------------------------------------------------------ consensus_11363#0 TGATTGCGCGCAGGATTGCCAAGGGCAGGCACAGAATTTCAGTGTAACGAAAAACCCATA 480 consensus_11363#1 ------------------------------------------------------------ consensus_11363#0 GCTCTTCTGCACCTTCACATCATCCATTTCGTGAACATCTAAGAGCTCACAGTTTCTGCA 540 consensus_11363#1 ----------GGCTTC---CCACCCAACTGGTGTTTCGTTAGCACCCCGTGTGTACCGNC 47 **** ** *** * *** ** * * * * * * consensus_11363#0 CCCTTTACCGCCCTCACTGTGGAGGGA-CAGCTG---CAGCAGAAGCAGTAGTGCCATGT 596 consensus_11363#1 CCCGTCGATCCTTGCCTGGNAGGGAGAACAGCCGTGCCAGCAGAAGCAGTAGTGCCATGT 107 *** * * * * * * ** **** * *********************** consensus_11363#0 ACCGAATTATCTTTACGAAATAAACTAGGCAATTGGACTGATTGGCCAAAAAAATACACA 656 consensus_11363#1 ACCGAATTATCTTTACGAAATAAACTAGGCAATTGGACTGATTGGCCAAATTTTTACACA 167 ************************************************** ****** consensus_11363#0 TCCAACATCTGCACAATCGCAGCTGGCAGGGTTCAACTTCAAACAGCCGTCTGTGTGCGC 716 consensus_11363#1 TCCAACATCTGCACCNTCGCAGCTGGCAGGGTTCAACTTTCAAAAA-------------- 213 ************** *********************** ** * consensus_11363#0 TTCTTGGCTCTCCTAACCACTGCCTTCTGTCCTTGAATCCATTTCAACCATTCTTTTGCT 776 consensus_11363#1 ------------------------------------------------------------ consensus_11363#0 AGTAGTTTATTCGTGAACACTAATCATGATCTCTCATCTGGACGCCAAAAAAAAAAAA 834 consensus_11363#1 ---------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||