These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11371#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1083 fasta sequence [CCTCTCCCCCTCTTCCGCCCCAACCTCCAACCTCACCTCGTCGTCGCCACGGCCTCCCTCGCGAGTTCGCCGTGGAACACCCGATGGGCTCCGGCGAGGACACCGGCGCGGGCGTCGCGGGAGGAGGGGGAGGCGGAGGCGCCGGTGGGGTGGTGCGGGGCGCGGTGCTGAAGGCGCTCGTGGTCGTCGGCGGCGTGCTGCTGCTCCGGCGGCTGCGCCGCTCCACCACCCGGTGGGACCACGCCCGCGCCGTCGTGGACGCGCTCTCCGGTGAGAAGTTCTCGAGGGAGCAGGCGAGGAAGGATCCTGATAACTACTTTAATTTGAGGATGCTTACATGCCCTGCAACAGAGATGGTGGATGGTTCTAGAGTGCTTTACTTTGAGCAAGCATTTTGGAGAAGTCCAGAAAAACCTTTCCGACAAAGATTCTACATGGTAAAGCCATGCCCAAAGGATATGAAATGTGATGTTGAGTTGAGTTCATATGCAATTAGAGATGTTGAAGAGTACAAGAATTTCTGTGACCGTCCAAAGGATCAGAGGCCACAACCAGAAGAAGTCATTGCGGACATTGCAGAGCACCTGACTACCATACACTTGTCGCGGTGTGAGCGTGGAAAGCGCTGCTTGTACAAAGGATCAACCCCTCCTGAAGGCTTTCCCAACAGCTGGAGCGGTGCGACATATTGTACATCGGATTTGTCCATTCACAAGAATGGTGAGGTGCATATCTGGGACAAGGGTTTTGACGATGATGGGAATCAGGTTTGGGGAACCAAAGCTGGCCCTTACGAGTTCAAGCCTGCCCCCAAGTCGAATTACGACGACATGTTCTCGCCGTTGAATTTTTCTGCTCCATTGACGCTGGAGAAGAAGATTGAGAGCTCGTTCGCAATCGATGATCAGTAGTATATTAGTATGTACATACAGTT-CATGTACCTCTCTCTCTTTTTTTTTAATTTAAGAAAACTAAGCAGAAAAAACTGCCTTCGTTTAGTATATAGCCCCGTGTACTGAATTTTGTTGCTAAGAAATGCAATAAAAAGTAGCGTTGCATGTAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK106093 [CCTCTCCCCCTCTTCCGCCCCAACCTCCAACCTCACCTCGTCGTCGCCACGGCCTCCCTCGCGAGTTCGCCGTGGAACACCCGATGGGCTCCGGCGAGGACACCGGCGCGGGCGTCGCGGGAGGAGGGGGAGGCGGAGGCGCCGGTGGGGTGGTGCGGGGCGCGGTGCTGAAGGCGCTCGTGGTCGTCGGCGGCGTGCTGCTGCTCCGGCGGCTGCGCCGCTCCACCACCCGGTGGGACCACGCCCGCGCCGTCGTGGACGCGCTCTCCGGTGAGAAGTTCTCGAGGGAGCAGGCGAGGAAGGATCCTGATAACTACTTTAATTTGAGGATGCTTACATGCCCTGCAACAGAGATGGTGGATGGTTCTAGAGTGCTTTACTTTGAGCAAGCATTTTGGAGAAGTCCAGAAAAACCTTTCCGACAAAGATTCTACATGGTAAAGCCATGCCCAAAGGATATGAAATGTGATGTTGAGTTGAGTTCATATGCAATTAGAGATGTTGAAGAGTACAAGAATTTCTGTGACCGTCCAAAGGATCAGAGGCCACAACCAGAAGAAGTCATTGCGGACATTGCAGAGCACCTGACTACCATACACTTGTCGCGGTGTGAGCGTGGAAAGCGCTGCTTGTACAAAGGATCAACCCCTCCTGAAGGCTTTCCCAACAGCTGGAGCGGTGCGACATATTGTACATCGGATTTGTCCATTCACAAGAATGGTGAGGTGCATATCTGGGACAAGGGTTTTGACGATGATGGGAATCAGGTTTGGGGAACCAAAGCTGGCCCTTACGAGTTCAAGCCTGCCCCCAAGTCGAATTACGACGACATGTTCTCGCCGTTGAATTTTTCTGCTCCATTGACGCTGGAGAAGAAGATTGAGAGCTCGTTCGCAATCGATGATCAGTAGTATATTAGTATGTACATACAGTT CATGTACCTCTCTCTCTTTTTTTTTAATTTAAGAAAACTAAGCAGAAAAAACTGCCTTCGTTTAGTATATAGCCCCGTGTACTGAATTTTGTTGCTAAGAAATGCAATAAAAAGTAG ] [+] EMBL CB643520 [ CACCTCCTCGTCGCCACGGCCTCCCTCGCGAGTTCGCCGTGGAACACCCGATGGGCTCCGGCGAGGACACCGGCGCGGGCGTCGCGGGAGGAGGGGGAGGCGGAGGCGCCGGTGGGGTGGTGCGGGGCGCGGTGCTGAAGGCGCTCGTGGTCGTCGGCGGCGTGCTGCTGCTCCGGCGGCTGCGCCGCTCCACCACCCGGTGGGACCACGCCCGCGCCGTCGTGGACGCGCTCTCCGGTGAGAAGTTCTCGAGGGAGCAGGCGAGGAAGGATCCTGATAACTACTTTAATTTGAGGATGCTTACATGCCCTGCAACAGAGATGGTGGATGGTTCTAGAGTGCTTTACTTTGAGCAAGCATTTTGGAGAAGTCCAGAAAAACCTTTCCGACAAAGATTCTACATGGTAAAGCCATGCCCAAAGGATATGAAATGTGATGTTGAGTTGAGTTCATATGCAATTAGAGATGTTGAAGAGTACAAGAATTTCTGTGACCGTCCAAAGGATCAGAGGCCACAACCAGACGAAGTCCTTGCGGACATTGCAGAGCACCTGACTACCATACACTTGTCGCGGTGTGAGCGTGGAAAGCGCTGCTTGTACAAAGGATCAACCCCTCCTG ] [+] EMBL CA754571 [ CCCTCGCGAGTTCGCCGTGGAACACCCGATGGGCTCCGGCGAGGACACCGGCGCGGGCGTCGCGGGAGGAGGGGGAGGCGGAGGCGCCGGTGGGGTGGTGCGGGGCGCGGTGCTGAAGGCGCTCGTGGTCGTCGGCGGCGTGCTGCTGCTCCGGCGGCTGCGCCGCTCCACCACCCGGTGGGACCACGCCCGCGCCGTCGTGGACGCGCTCTCCGGTGAGAAGTTCTCGAGGGAGCAGGCGAGGAAGGATCCTGATAACTACTTTAATTTGAGGATGCTTACATGCCCTGCAACAGAGATGGTGGATGGTTCTAGAGTGCTTTACTTTGAGCAAGCATTTTGGAGAAGTCCAGAAAAACCTTTCCGACAAAGATTCTACATGGTAAAGCCATGCCCAAAGGATATGAAATGTGATGTTGAGTTGAGTTCATATGCAATTAGAGATGTTGAAGAGTACAAGAATTTCTGTGACCGTCCAAAGGATCAGAGGCCACAACCAGAAGAAGTCATTGCGGACATTGCAGAGCACCTGACTACCATACACTTGTCGCGGTGTGAGCGTGGAAAGCGCTGCTTGTACAAAGGATCAACCCCTCCTGAAGGCTTTCCCNACAGC ] [-] EMBL CB643521 [ AGGATCCTGATAACTACTTTAATTTGAGGATGCTTACATGCCCTGCAACAGAGATGGTGGATGGTTCTAGAGTGCTTTACTTTGAGCAAGCATTTTGGAGAAGTCCAGAAAAACCTTTCCGACAAAGATTCTACATGGTAAAGCCATGCCCAAAGGATATGAAATGTGATGTTGAGTTGAGTTCATATGCAATTAGAGATGTTGAAGAGTACAAGAATTTCTGTGACCGTCCAAAGGATCAGAGGCCACAACCAGAAGAAGTCATTGCGGACATTGCAGAGCACCTGACTACCATACACTTGTCGCGGTGTGAGCGTGGAAAGCGCTGCTTGTACAAAGGATCAACCCCTCCTGAAGGCTTTCCCAACAGCTGGAGCGGTGCGACATATTGTACATCGGATTTGTCCATTCACAAGAATGGTGAGGTGCATATCTGGGACAAGGGTTTTGACGATGATGGGAATCAGGTTTGGGGAACCAAAGCTGGCCCTTACGAGTTCAAGCCTGCCCCCAAGTCGAATTACGACGACATGTTCTCGCCGTTGAATTTTTCTGCTCCATTGACGCTGGAGAAGAAGATTGAGAGCTCGTTCGCAATCGATGATCAGTAGTATATTAGTATGTACATACAGTT CATGTACCTCTCTCTC TTTTTTTTAAGGTAAGAAAACTAAGCAGAAAAAACTGCCTTCGTTTAGTATATAGCCCCGTGTACTGAATTTTGTTTTTAAGGAATGCAATAAAAAGTAGCGT ] [+] EMBL OSS11996A [ AAGTCCAGAAAAACCTTTCCGACAAAGATTCTACATGGTAAAGCCATGCCCAAAGGATATGAAATGTGATGTTGAGTTGAGTTCATATGCAATTAGAGATGTTGAAGAGTACAAGAATTTCTGTGACCGTCCAAAGGATCAGAGGCCACAACCAGAAGAAGTCATTGCGGACATTGCAGAGCACCTGACTACCATACACTTGTCGCGGTGTGAGCGTGGAAAGCGCTGCTTGTACAAAGGATCAACCCCTCCTGAAGGCTTTCCCAACAGCTGGAGCGGTGCGCAATATTGTACATCGGATTTGTCCATTCACAAGAATGGTGAGGTGCATATCTGGGA ] [+] EMBL BE229721 [ GGATATG AATGTGATGTTGAGTTGAGTTCATATGCAATTAGAGATGTTGAAGAGTACAAGAATTTCTGTGACCGTCCAAAGGATCAGAGGCCACAACCAGAAGAAGTCATTGCGGACATTGCAGAGCACCTGACTACCATACACTTGTCGCGGTGTGAGCGTGGAAAGCGCTGCTTGTNCAAAGGATCAACCCCTCCTGAAGGCTTTCCCAACAGCTGGAGCGGTGCGACATATTGTNCATCGGATTTGTCCATTCACAAGAATGGTGAGGTGCATATCTGGGACAAGGGTTTTGACGATGATGGGAATCAGGTTTGGGGAACCAAANCTGGCCCTTACGANTTCAAGCCTGCCCCCCAGTCGAATTACGACNACATGTTCTCGCCGTTGAATTTTTCTGCTCCCTTGACGCTGGAGAAGAANATTGANANCTCGTTCGCCATCNATGATCNGTANTATATTANTAT TTCATACAGTTCCATGTNCCNCTCTCTCTTTTTTTTTAATTTAAGAAAACTAANCCGAAAAAACTGCCTTCGTTTAGTATNTA CCCCGTGTTCTGAATTTTGTTGCTAAAAAATGCCATAAAAANTAc ] [+] EMBL AU088673 [ TTGAGTTGAGTTCATATGCAATTAGAGATGTTGAAGAGTACAAGAATTTCTGTGACCGTCCAAAGGATCAGAGGCCACAACCAGAAGAAGTCATTGCGGACATTGCAGAGCACCTGACTACCATACACTTGTCGCGGTGTGAGCGTGGAAAGCGCTGCTTGTACAAAGGATCAACCCCTCCTGAAGGCTTTCCCAACAGCTGGAGCGGTGCGACATATTGTACATCGGATTTGTCCATTCACAAGAATGGTGAGGTGCATATCTGGGACAAGGGTTTTGACGATGATGGGAATCAGGTTTGGGGAACCAAAGCTGGCCCTTACGAGTTCAAGCCTGCCCCCAAGTCGAATTACGACGACATGTTCTCGCCGTTGAATTTTTCTGCTCCATTGACGCTGGAGAAGAAGATTGAGAGCTCGTTCGCAATCGATGATCAGTAGTATATTAGTATGTACATACAGTT CATGTACCTCTCTCTCTTTTTTTTTAATTTAAGAAAACTAAGCAGAAAAAACTGCCTTCGTTTAGTATATAGCCCCGTGTACTGAATTTTGTTGCTAAGAAATGCAATAAAAAGTAGCGTTGCATGTAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_11371#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 670 fasta sequence [GTAANCCCAAGGCCCAAAGGNATATGGAAATGGGATGTTGNAGTGGAGTCATAACAATAGAGATGTTGAAAGAGTGACAAGAATTGTCTGGTGACCGTCAAAGGGATCAGAGCCCACTACCAGAAGAAGTCATTGCGGACATTTGCAGAGCACCTGACTACCATACACTTGTCGCGGTGTGAGCGTGGAAAGCGCTGCTTGTACAAAAGGATCAACCCCTCCTGAAGGCTTTCCCTACAGCTGGAGCGGTGCGTACATATTGTACATCGGATTTGTCCATTCACAAGATATGTGAGGTGCATATCCTGGGGACAAGGGTTTTGACGATGATGGGAATACAGGTTTGGGGAACCATAAAGCTGGCCCTTACGAGTTCAAGCCTGGCCCCCAAGTCGGAATTACGACGACATGGTTCTCGCCCGTTGAATTGTTTGCGGCTCCATTGACGNCTGGAGAAGAAGATTGGAGAGNTCGTTGCGCAATGCGAGGATNCAGTAGTATATTAGTAGGTACATGACAAGTGTGCATGGGACCTGCTGCTGCTCTGTTGTTTGTNGAATTTAAGAAAACTAANCAGAAAAAACTGGCCTTCGTTTAGTATATACCCCCGTGGTACNGAATTTGGTTGCTAAGAAATCCATATAAAAAGTAGCGTTGCATGGTATAAAAA] [+] EMBL BM419465 [GTAANCCCAAGGCCCAAAGGNATATGGAAATGGGATGTTGNAGTGGAGTCATAACAATAGAGATGTTGAAAGAGTGACAAGAATTGTCTGGTGACCGTCAAAGGGATCAGAGCCCACTACCAGAAGAAGTCATTGCGGACATTTGCAGAGCACCTGACTACCATACACTTGTCGCGGTGTGAGCGTGGAAAGCGCTGCTTGTACAAAAGGATCAACCCCTCCTGAAGGCTTTCCCTACAGCTGGAGCGGTGCGTACATATTGTACATCGGATTTGTCCATTCACAAGATATGTGAGGTGCATATCCTGGGGACAAGGGTTTTGACGATGATGGGAATACAGGTTTGGGGAACCATAAAGCTGGCCCTTACGAGTTCAAGCCTGGCCCCCAAGTCGGAATTACGACGACATGGTTCTCGCCCGTTGAATTGTTTGCGGCTCCATTGACGNCTGGAGAAGAAGATTGGAGAGNTCGTTGCGCAATGCGAGGATNCAGTAGTATATTAGTAGGTACATGACAAGTGTGCATGGGACCTGCTGCTGCTCTGTTGTTTGTNGAATTTAAGAAAACTAANCAGAAAAAACTGGCCTTCGTTTAGTATATACCCCCGTGGTACNGAATTTGGTTGCTAAGAAATCCATATAAAAAGTAGCGTTGCATGGTATAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11371#0 CCTCTCCCCCTCTTCCGCCCCAACCTCCAACCTCACCTCGTCGTCGCCACGGCCTCCCTC 60 consensus_11371#1 ------------------------------------------------------------ consensus_11371#0 GCGAGTTCGCCGTGGAACACCCGATGGGCTCCGGCGAGGACACCGGCGCGGGCGTCGCGG 120 consensus_11371#1 ------------------------------------------------------------ consensus_11371#0 GAGGAGGGGGAGGCGGAGGCGCCGGTGGGGTGGTGCGGGGCGCGGTGCTGAAGGCGCTCG 180 consensus_11371#1 ------------------------------------------------------------ consensus_11371#0 TGGTCGTCGGCGGCGTGCTGCTGCTCCGGCGGCTGCGCCGCTCCACCACCCGGTGGGACC 240 consensus_11371#1 ------------------------------------------------------------ consensus_11371#0 ACGCCCGCGCCGTCGTGGACGCGCTCTCCGGTGAGAAGTTCTCGAGGGAGCAGGCGAGGA 300 consensus_11371#1 ------------------------------------------------------------ consensus_11371#0 AGGATCCTGATAACTACTTTAATTTGAGGATGCTTACATGCCCTGCAACAGAGATGGTGG 360 consensus_11371#1 ------------------------------------------------------------ consensus_11371#0 ATGGTTCTAGAGTGCTTTACTTTGAGCAAGCATTTTGGAGAAGTCCAGAAAAACCTTTCC 420 consensus_11371#1 ------------------------------------------------------------ consensus_11371#0 GACAAAGATTCTACATGGTAAAGCCATGCCCAAAGGATAT---GAAATGTGATGTTGAGT 477 consensus_11371#1 -----------------GTAANCCCAAGGCCCAAAGGNATATGGAAATGGGATGTTGNAG 43 **** *** * ** ** * ** ****** ******* consensus_11371#0 TGAGTTCATATGCAATTAGAGATGTTGAA-GAGT-ACAAGAATT-TCTG-TGACCGTCCA 533 consensus_11371#1 TGGAGTCATA-ACAAT-AGAGATGTTGAAAGAGTGACAAGAATTGTCTGGTGACCGTCAA 101 ** ***** **** ************ **** ********* **** ******** * consensus_11371#0 AAGGATCAGAGGCCACAACCAGAAGAAGTCATTGCGGACATT-GCAGAGCACCTGACTAC 592 consensus_11371#1 AGGGATCAGAGCCCACTACCAGAAGAAGTCATTGCGGACATTTGCAGAGCACCTGACTAC 161 * ********* **** ************************* ***************** consensus_11371#0 CATACACTTGTCGCGGTGTGAGCGTGGAAAGCGCTGCTTGTACAAA-GGATCAACCCCTC 651 consensus_11371#1 CATACACTTGTCGCGGTGTGAGCGTGGAAAGCGCTGCTTGTACAAAAGGATCAACCCCTC 221 ********************************************** ************* consensus_11371#0 CTGAAGGCTTTCCCAACAGCTGGAGCGGTGCG-ACATATTGTACATCGGATTTGTCCATT 710 consensus_11371#1 CTGAAGGCTTTCCCTACAGCTGGAGCGGTGCGTACATATTGTACATCGGATTTGTCCATT 281 ************** ***************** *************************** consensus_11371#0 CACAAGAATGGTGAGGTGCATATCT--GGGACAAGGGTTTTGACGATGATGGGAAT-CAG 767 consensus_11371#1 CACAAGATATGTGAGGTGCATATCCTGGGGACAAGGGTTTTGACGATGATGGGAATACAG 341 ******* ************** ***************************** *** consensus_11371#0 GTTTGGGGAACCA--AAGCTGGCCCTTACGAGTTCAAGCCTG-CCCCCAAGTCG-AATTA 823 consensus_11371#1 GTTTGGGGAACCATAAAGCTGGCCCTTACGAGTTCAAGCCTGGCCCCCAAGTCGGAATTA 401 ************* *************************** *********** ***** consensus_11371#0 CGACGACATG-TTCTCGCC-GTTGAATTTTT--CTGCTCCATTGACGC-TGGAGAAGAAG 878 consensus_11371#1 CGACGACATGGTTCTCGCCCGTTGAATTGTTTGCGGCTCCATTGACGNCTGGAGAAGAAG 461 ********** ******** ******** ** * ************ *********** consensus_11371#0 ATTG-AGAGCTCGTT-CGCAAT-CGATGATC-AGTAGTATATTAGTATGTACAT-ACA-- 931 consensus_11371#1 ATTGGAGAGNTCGTTGCGCAATGCGAGGATNCAGTAGTATATTAGTAGGTACATGACAAG 521 **** **** ***** ****** *** *** *************** ****** *** consensus_11371#0 -GTTCATG-----TACCTCT-CTCTCTTTTTTTTT-AATTTAAGAAAACTAAGCAGAAAA 983 consensus_11371#1 TGTGCATGGGACCTGCTGCTGCTCTGTTGTTTGTNGAATTTAAGAAAACTAANCAGAAAA 581 ** **** * * ** **** ** *** * **************** ******* consensus_11371#0 AACTG-CCTTCGTTTAGTATATAGCCCCGTG-TACTGAATTTTGTTGCTAAGAAATGCA- 1040 consensus_11371#1 AACTGGCCTTCGTTTAGTATATACCCCCGTGGTACNGAATTTGGTTGCTAAGAAATCCAT 641 ***** ***************** ******* *** ****** ************* ** consensus_11371#0 ATAAAAAGTAGCGTTGCATGTAAAAAAAAAAAAAAAAAAAAAA 1083 consensus_11371#1 ATAAAAAGTAGCGTTGCATGGTATAAAAA-------------- 670 ******************** * ***** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||