cluster # 11377

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Oryza sativa
cluster # 11377 cluster # 11377 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11377#0 length = 665 sequences # 7

consensus_11377#1 length = 181 sequences # 1

consensusID : consensus_11377#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 665
fasta sequence

                              [TTTTTTTTTTTTTTTTGGAAGTCACAACCAGTGACCCAATCTCTT-GCATTCAAACATGTTAAAAATGTTATCAAATGATCAAATGAAAACATAGATGATAATTTACATGTGTACATCCTAAATAGAACCTAAATCGGCACGTTTAGCCGATTTAGGATCGCCT-GTGCCAATACATGGCACAGCAGTAAGCAT-CTGATAAATTCT-TGCTTCTGGTCCTGAAGCAACCACATGTTACTGGGATCCGTTCTTCTTCATCCTCAGAAAGCTAACTAATGTGAGCCTGGAGGGAGCACC--GGTTCCC-GGTCTCCTCTTAATTGTTGTCGTCTTCCACAGCTTTCCATCTCTCATTGTAGTCGTGGTTGTAGATGATACGTTATAGAACTCACATACACCATGCAGAAGCAACCTCTGAAACGGATCCTGGACATTCAGTACAAGCACATCTTTACCACTAGCATCTTCAATGAAGGCCCTAATTCGGTCCTCATATATGTCAAGCAGATCTGGGAGGAAATTTCTCTTTATGGCTTCTCTTGTTTGGCGATCTATACGATGCCAAGCATTGAGAGCAATCAATTCATCGCTGTCCACATGATTCTTCTGTTTTGGAGAAGATTGTTTCATCTGTTGCATCAATCGGGCCTCAACGTCCACGTCAATACTCC]

[+] EMBL CA762513             [TTTTTTTTTTTTTTTTGGAAGTCACAACCAGTGACCCTATCTCTT GCATTCAAACATGTTAAAAATGTTATCAAATGATCAAATGAAAACATAGATGATAATTTACATGTGTACATCCTAAATAGAACCTAAATCGGCACGTTTAGCCCATTTAGGATCGCCT GTGCCAATACATGGCACAGCAGTAAGCAT CTGATAAATTCT TGCTTCTGGTCCTGAAGCAACCACATGTTACTGGGATCCGTTCTTCTTCATCCTCAAAAAGCTAACTAATGTGAGCCTGGAGGGAGCACC  GGTTCCC GGTCTCCTCTTAATTGTTGTCGTCTTCCACAGCTTTCCATCTCTCATTGTAGTCGTGGTTGTAGATGATACGTTATAGAACTCACATACACCATGCAAAAGCAACCTCTGAAACGGATCCTGGACATTCAGTACAAGCACATCTTTACCACTAGCATCTTCAATGAAGGCCCTAATTCGGTCCTCATATATGTCAAGCAGATCTGGGAGGAAATTTCTCTTTATGGCTTCTCTTGTTTGGCGATCTATACGATGCCAAGCATTGAGAGCAATCAATTCATCGCTGTCCACATGATTCTTCTGTTTTGGAGAAGATTGTTTCATCTGTTGCATCAATCGGGCCTCAACGTCCACGTCAATACTCC]
[-] EMBL AU096653             [     TTTTTTTTTTTGGAAGTCACAACCAGTGACCCAATCTCTT GCATTCAAACATGTTAAAAATGTTATCAAATGATCAAATGAAAACATAGATGATAATTTACATGTGTACATCCTAAATAGAACCTAAATCGGCACGTTTAGCCGATTTAGGATCGCCT GTGCCAATACATGGCACAGCAGTAAGCAT CTGATAAATTCT TGCTTCTGGTCCTGAAGCAACCACATGTTACTGGGATCCGTTCTTCTTCATCCTCAGAAAGCTAACTAATGTGAGCCTGGAGGGAGCACC  GGTTCCC GGTCTCCTCTTAATTGTTGTCGTCTTCCACAGCTTTCCATCTCTCATGGTAGTCGTGGTTGTAGATGAAACGTTATAGAACTCACATACACCATGCAGAAGCAACCTCTGAAACGGATCCTGGACATTCAGTACAAGCACATCTTTACCACTAGCATCTTCAATGAAGGCCCTAATTCGGTCCTCATATATGTCAAGCAGATCTGGGAGGAAATTTCTCTTTATGGCTTCTCTTGTT                                                                                                                               ]
[-] EMBL BI799474             [     TTTTTTTTTTGGGAAGTCACAACCAGTGACCCAATCTCTTGGCATTCAAACATGTTAAAAATGTTATCAAATGATCAAATGAAAACATAGATGATAATTTACATGTGTACATCCTAAATAGAACCTAAATCGGCACGTTTAGCCGATTTAGGATCGCCTGGTGCCAATACATGGCACAGCAGTAAGCAT CTGATAAATTCTGTGCTTCTGGTCCTGAAGCAACCACATGTTACTGGGATCCGTTCTTCTTCATCCTCAGAAAGCTAACTAATGTGAGCCTGGAGGGAGCACCGGGGTTCCCGGGTCTCCTCTTAATTGTTGTCGTCTTCCACA                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL BI798795             [     TTTTTTTTTTGGGAAGTCACAACCAGTGACCCAATCTCTTGGCATTCAAACATGTTAAAAATGTTATCAAATGATCAAATGAAAACATAGATGATAATTTACATGTGTACATCCTAAATAGAACCTAAATCGGCACGTTTAGCCGATTTAGGATCGCCTGGTGCCAATACATGGCACAGCAGTAAGCAT CTGATAAATTCT TGCTTCTGGTCCTGAAGCAACCACATGTTACTGGGATCCGTTCTTCTTCATCCTCAGAAAGCTAACTAATGTGAGCCTGGAGGGAGCACC  GGTTCCC GGTCTCCTCTTAA TGTTGTCGTCTTCCACA                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CA766795             [         TTTTTTTGGAAGTCACAACCAGTGACCCAATCTCTT GCATTCAAACATGTTAAAAATGTTATCAAATGATCAAATGAAAACATAGATGATAATTTACATGTGTACATCCTAAATAGAACCTAAATCGGCACGTTTAGCCGATTTAGGATCGCCT GTGCCAATACATGGCACAGCAGTAAGCATGCTGATAAATTCT TGCTTCTGGTCCTGAAGCAACCACATGTTACTGGGATCCGTTCTTCTTCATCCTCAGAAAGCTAACTAATGTGAGCCTGGAGGGAGCACC  GGTTCCC GGTCTCCTCTTAATTGTTGTCGTCTTCCACAGCTTTC                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CF294047             [          TTTTTTGGAAGTCACAACCAGTGATCAAATCTCTT GCATTCAAACATGTTAAAAATGTTATCAAATGATCAAATGAAAACATAGATGATAATTTACATGTGTACATCCTTAATAGAACCTAAATCGGCACGTTTAGCCGATTTAGGATCGCCT GTGTTCTTTCATGGCACAGCAGTAATCTT CTGATAAATTCT TGCTTCTTTTTTTGAAGCAACCACATGTTACTGGGATCCGTTCTTCTTCATCCTCAGAAAGCTAACTAATGTGAGCCTGGAGGGAGCACC  GGTTCCC GGTCTCCTCTTAATTGTTGTCGTCTTCCACAGCTTTCCATCTCTCATGGTAGTCGTGGTTGTAGATGATACGTTATAGAACTCACATACACCATGCAGAAGCAACCTCTGAAACGGATCCTGGACATTCAGTACAAGCACATCTTTACCACTAGC                                                                                                                                                                                                                 ]
[-] EMBL BI808824             [                                        tttTT GCATTCAAACATGTTAAAAATGTTATCAAATGATCAAATGAAAACATAGATGATAATTTACATGTGTACATCCTAAATAGAACCTAAATCGGCACGTTTAGCCGATTTAGGATCGCCT GTGCCAATACATGGCACAGCAGTAAGCAT CTGATAAATTCT TGCTTCTGGTCCTGAAGCAACCACATGTTACTGGGATCCGTTCTTCTTCATCCTCAGAAAGCTAACTAATGTGAGCCTGGAGGGAGCACC  GGTTCCC GGTCTCCTCTTAA TGTTGTCGTCTTCCACAGCTTTCCATCTCTCATTGTAGTCG GGTTGTAGATGATACGTTATAGAACTCACATACACCATGCAGAAGCAACCTCTGAAACGGATCCTGGACATTCAGTACAAGCACATCTTTACCACTAGCATCTTCAATGAAGGCCCTAATTCGGTCCTCATATATGTCAAGCAGATCTGGGAGGAAcat                                                                                                                                                     ]




>consensus_11377#0
TTTTTTTTTTTTTTTTGGAAGTCACAACCAGTGACCCAATCTCTTGCATTCAAACATGTT
AAAAATGTTATCAAATGATCAAATGAAAACATAGATGATAATTTACATGTGTACATCCTA
AATAGAACCTAAATCGGCACGTTTAGCCGATTTAGGATCGCCTGTGCCAATACATGGCAC
AGCAGTAAGCATCTGATAAATTCTTGCTTCTGGTCCTGAAGCAACCACATGTTACTGGGA
TCCGTTCTTCTTCATCCTCAGAAAGCTAACTAATGTGAGCCTGGAGGGAGCACCGGTTCC
CGGTCTCCTCTTAATTGTTGTCGTCTTCCACAGCTTTCCATCTCTCATTGTAGTCGTGGT
TGTAGATGATACGTTATAGAACTCACATACACCATGCAGAAGCAACCTCTGAAACGGATC
CTGGACATTCAGTACAAGCACATCTTTACCACTAGCATCTTCAATGAAGGCCCTAATTCG
GTCCTCATATATGTCAAGCAGATCTGGGAGGAAATTTCTCTTTATGGCTTCTCTTGTTTG
GCGATCTATACGATGCCAAGCATTGAGAGCAATCAATTCATCGCTGTCCACATGATTCTT
CTGTTTTGGAGAAGATTGTTTCATCTGTTGCATCAATCGGGCCTCAACGTCCACGTCAAT
ACTCC

consensusID : consensus_11377#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 181
fasta sequence

                              [TTGAGACCTGGGGGGAGGCGCGGTCCCGGGCTCCTCCTAAATTGGTTGTCGTCTTCCACAGCTTTCCATCTCTCATTGTAGTCGTGGTTGTAGATGATACGTTATAGAACTCACATACACCATGCAGAAGCAACCTCTAATCAAGGATCCTGGACATTCAGTACAAGCACATCTTTACCAC]

[-] EMBL OS37926              [TTGAGACCTGGGGGGAGGCGCGGTCCCGGGCTCCTCCTAAATTGGTTGTCGTCTTCCACAGCTTTCCATCTCTCATTGTAGTCGTGGTTGTAGATGATACGTTATAGAACTCACATACACCATGCAGAAGCAACCTCTAATCAAGGATCCTGGACATTCAGTACAAGCACATCTTTACCAC]




>consensus_11377#1
TTGAGACCTGGGGGGAGGCGCGGTCCCGGGCTCCTCCTAAATTGGTTGTCGTCTTCCACA
GCTTTCCATCTCTCATTGTAGTCGTGGTTGTAGATGATACGTTATAGAACTCACATACAC
CATGCAGAAGCAACCTCTAATCAAGGATCCTGGACATTCAGTACAAGCACATCTTTACCA
C

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11377#0      TTTTTTTTTTTTTTTTGGAAGTCACAACCAGTGACCCAATCTCTTGCATTCAAACATGTT 60
consensus_11377#1      ------------------------------------------------------------
                                                                                   

consensus_11377#0      AAAAATGTTATCAAATGATCAAATGAAAACATAGATGATAATTTACATGTGTACATCCTA 120
consensus_11377#1      ------------------------------------------------------------
                                                                                   

consensus_11377#0      AATAGAACCTAAATCGGCACGTTTAGCCGATTTAGGATCGCCTGTGCCAATACATGGCAC 180
consensus_11377#1      ------------------------------------------------------------
                                                                                   

consensus_11377#0      AGCAGTAAGCATCTGATAAATTCTTGCTTCTGGTCCTGAAGCAACCACATGTTACTGGGA 240
consensus_11377#1      ------------------------------------------------------------
                                                                                   

consensus_11377#0      TCCGTTCTTCTTCATCCTCAGAAAGCTAACTAATGTGAGCCTGGAGGGAGCACCGGTTCC 300
consensus_11377#1      ---------------------------------TTGAGACCTGGGGGGAGGCGCGGTCCC 27
                                                        *     ***** *****   **** **

consensus_11377#0      CGGTCTCCTCTTAATTG-TTGTCGTCTTCCACAGCTTTCCATCTCTCATTGTAGTCGTGG 359
consensus_11377#1      GGGCTCCTCCTAAATTGGTTGTCGTCTTCCACAGCTTTCCATCTCTCATTGTAGTCGTGG 87
                        **   *  ** ***** ******************************************

consensus_11377#0      TTGTAGATGATACGTTATAGAACTCACATACACCATGCAGAAGCAACCTCTGAA-ACGGA 418
consensus_11377#1      TTGTAGATGATACGTTATAGAACTCACATACACCATGCAGAAGCAACCTCTAATCAAGGA 147
                       *************************************************** *  * ***

consensus_11377#0      TCCTGGACATTCAGTACAAGCACATCTTTACCACTAGCATCTTCAATGAAGGCCCTAATT 478
consensus_11377#1      TCCTGGACATTCAGTACAAGCACATCTTTACCAC-------------------------- 181
                       **********************************                          

consensus_11377#0      CGGTCCTCATATATGTCAAGCAGATCTGGGAGGAAATTTCTCTTTATGGCTTCTCTTGTT 538
consensus_11377#1      ------------------------------------------------------------
                                                                                   

consensus_11377#0      TGGCGATCTATACGATGCCAAGCATTGAGAGCAATCAATTCATCGCTGTCCACATGATTC 598
consensus_11377#1      ------------------------------------------------------------
                                                                                   

consensus_11377#0      TTCTGTTTTGGAGAAGATTGTTTCATCTGTTGCATCAATCGGGCCTCAACGTCCACGTCA 658
consensus_11377#1      ------------------------------------------------------------
                                                                                   

consensus_11377#0      ATACTCC 665
consensus_11377#1      -------