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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11378#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1345 fasta sequence
[TTCTGCTTTCGTCTCCAGAGGTTCGTCTTCTTCTCCTTCCCCCAGCTTTGCGCCTTCGCGCAGCCGCGTAATCTCGTCTGCCCTCGCTGCTGGATGTCGGCGATCCGCGCCTCTTCTCACCGGCT----ACAAGAACTGTGGCATTAACAAGGACAAAGATGTCAAGCATGGCAGGCTTGGGAGCTTCTCAGCATGGATATCCTCCCCGAAGTCATGAGCCCTGGACTAAACTTGTACACAGAGAGAGATTACCCGAGTGGTTTGCATACAATCCAAAGACCATGAGGCCTCCACCACTTAGCCATGATACCAAGTGCATGAAGATTTTATCCT-GGAATATTAACGGGCTTCATGATGTTGTAACGACAAAGGGGTTTTCTGCACGTGACTTGGCTCAGA-GAGAGAATTTTGATGTGTTATGTCTTCAAGAGACACATTTGGAGGAAAAGGATGTTGAAAAGTTTAAGAATCTGATAGCAGACTATGACAGCTATTGGTCATGCAGCGTCTCGAGGCTTGGCTATTCAGGGACTGCAGTAATTTCACGGGTTAAACCCAATTTCTGTCCAATACGGGATTGGCATACGTGAACATGATCATGAGGGCAGGGTTATTACTCTGGAGTTTGATGGTTTTTACTTGGTAAATGCCTATGTTCCAAATTCTGGTCGTTTTCTACGTAGACTGAATTACAGGGTCAATAACTGGGAT-CCGTGTTTCAGCAACTA-TGTAAAAATA-CTGGAAAAGTCGAAACCAGTGA-TTG-TTGCAGGAGACCTTAACTGTG-CTCGTCAAAGCAT-TGACATTCACAATCCTCCAGCAAAAACCAAGTCTGCAGGTTTCACAATTGAAGAGAGAGAGTCATTTGAGACAAACTTTTCTAGCAAAGGCCTTGTGGATACTTTCAGAAAACAGCACCCTAATGCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCATAACCAACAAAGGTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTTCATGATTCATACATTCTTCCTGATGTATCATTCAGCGACCACAGTCCAATTGGCCTGGTACTGAAGCTATAGTATCGGCGAGACTCTAAAATTCGAGACCTTACTGAAGCCAACTGTACATAATCACTTGACAAATGCTTATATAAATCTTTGGCCAGCCTGAAATGTTGCAAGATGTGGTAGAGTTAGTCTCCATATCCATTTGCCAGTCAATATTACGATTTGTTCTGTCAGTCTGTCAGGTGTTCGTCCTGAGACCTTCTGTATATAACGCGATGCATTTGTTTGCTGTCTCTGGGCCAAACTTTCAAAAACATTTTATCATGAA]
[+] EMBL AU088619 [TTCTGCTTTCGTCTCCAGAGGTTCGTCTTCTTCTCCTTCCCCCAGCTTTGCGCCTTCGCGCANCCGCGTAATCTCGTCTGCCCTCGCTGCTGGATGTCGGCGATCCGCGCCTCTTCTCACCGGCTGCAGACAAGAACTGTGGCATTAACAAGGACAAAGATGTCAAGCATGGCAGGCTTGGGAGCTTCTCAGCATGGATATCCTCCCCGAAGTCATGAGCCCTGGACTAAACTTGTACACAGAGAGAGATTACCCGAGTGGTTTGCATACAATCCAAAGACCATGAGGCCTCCACCACTTAGCCATGATACCAAGTGCATGAAGATTTTATCCTGGGAATATTAACGGGCTTCATGATGTTGTAACGACAAAGGGGTTTTCTGCACGTGACTTGGCTCAGAGGAGAGAATTTTGATGTGTTATGTCTTCAAGng ]
[+] EMBL C28334 [TTCTGCTTTCGTCTCCAGAGGTTCGTCTTCTTCTCCTTCCCCCAGCTTTGCGCCTTCGCGCA NCGCGTAATCTCGTCTGCCCTCGCTGCTGGATGTCGGCGATCCGCGCCTCTTCTCACCGGCTGCAGACAAGAACTGTGGCATTAACAAGGACAAAGATGTCAAGCATGGCAGGCTTGGGAGCTTCTCAGCATGGATATCCTCCCCGAAGTCATGAGCCCTGGACTAAACTTGTACACAGAGAGAGATTACCCGAGTGGTTTGCATACAATCCAAAGACCATGAGGCCTCCACCACTTAGCCATGATACCAAGTGCATGAAGATTTTATCCT GGGNTATTAACGGGCTTCATGATGTTGTAACGACAAAGGGG TTTCTNCACGTGACTTTGCTCAGA GAGAGAA TTTGATGTGTTATGGCTTCAAG GGCACATTTGGgg ]
[+] EMBL AK102132 [ TTCGTCTCCAGAGGTTCGTCTTCTTCTCCTTCCCCCAGCTTTGCGCCTTCGCGCAGCCGCGTAATCTCGTCTGCCCTCGCTGCTGGATGTCGGCGATCCGCGCCTCTTCTCACCGGCT ACAAGAACTGTGGCATTAACAAGGACAAAGATGTCAAGCATGGCAGGCTTGGGAGCTTCTCAGCATGGATATCCTCCCCGAAGTCATGAGCCCTGGACTAAACTTGTACACAGAGAGAGATTACCCGAGTGGTTTGCATACAATCCAAAGACCATGAGGCCTCCACCACTTAGCCATGATACCAAGTGCATGAAGATTTTATCCT GGAATATTAACGGGCTTCATGATGTTGTAACGACAAAGGGGTTTTCTGCACGTGACTTGGCTCAGA GAGAGAATTTTGATGTGTTATGTCTTCAAGAGACACATTTGGAGGAAAAGGATGTTGAAAAGTTTAAGAATCTGATAGCAGACTATGACAGCTATTGGTCATGCAGCGTCTCGAGGCTTGGCTATTCAGGGACTGCAGTAATTTCACGGGTTAAACCCAATTTCTGTCCAATACGGGATTGGCATACGTGAACATGATCATGAGGGCAGGGTTATTACTCTGGAGTTTGATGGTTTTTACTTGGTAAATGCCTATGTTCCAAATTCTGGTCGTTTTCTACGTAGACTGAATTACAGGGTCAATAACTGGGAT CCGTGTTTCAGCAACTA TGTAAAAATA CTGGAAAAGTCGAAACCAGTGA TTG TTGCAGGAGACCTTAACTGTG CTCGTCAAAGCAT TGACATTCACAATCCTCCAGCAAAAACCAAGTCTGCAGGTTTCACAATTGAAGAGAGAGAGTCATTTGAGACAAACTTTTCTAGCAAAGGCCTTGTGGATACTTTCAGAAAACAGCACCCTAATGCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCATAACCAACAAAGGTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTTCATGATTCATACATTCTTCCTGATGTATCATTCAGCGACCACAGTCCAATTGGCCTGGTACTGAAGCTATAGTATCGGCGAGACTCTAAAATTCGAGACCTTACTGAAGCCAACTGTACATAATCACTTGACAAATGCTTATATAAATCTTTGGCCAGCCTGAAATGTTGCAAGATGTGGTAGAGTTAGTCTCCATATCCATTTGCCAGTCAATATTACGATTTGTTCTGTCAGTCTGTCAGGTGTTCGTCCTGAGACCTTCTGTATATAACGCGATGCATTTGTTTGCTGTCTCTGGGCCAAACTTTCATAGGCATTTTATCATGAA]
[+] EMBL CF307333 [ TCTCCAGAGGTTCGTCTTCTTCTCCTTCCCCCAGCTTTGCGCCTTCGCGCAGCCGCGTAATCTCGTCTGCCCTCGCTGCTGGATGTCGGCGATCCGCGCCTCTTCTCACCGGCT ACAAGAACTGTGGCATTAACAAGGACAAAGATGTCAAGCATGGCAGGCTTGGGAGCTTCTCAGCATGGATATCCTCCCCGAAGTCATGAGCCCTGGACTAAACTTGTACACAGAGAGAGATTACCCGAGTGGTTTGCATACAATCCAAAGACCATGAGGCCTCCACCACTTAGCCATGATACCAAGTGCATGAAGATTTTATCCT GGAATATTAACGGGCTTCATGATGTTGTAACGACAAAGGGGTTTTCTGCACGTGACTTGGCTCAGA GAGAGAATTTTGATGTGTTATGTCTTCAAGAGACACATTTGGAGGAAAAGGATGTTGAANAGTTTAAGAATCTGATAGCAGACTATGACAGCTATTGGTCATGCAGCGTCTCGA ]
[+] EMBL AU092885 [ TGGTAAATGCCTATGTTCCAAATTCTGGTCGTTTTCTACGTAGACTGAATTACAGGGTCAATAACTGGGAT CCGTGTTTCAGCAACTA TGTAAAAATA CTGGAAAAGTCGAAACCAGTGA TTG TTGCAGGAGACCTTAACTGTG CTCGTCAAAGCAT TGACATTCACAATCCTCCAGCAAAAACCAAGTCTGCAGGTTTCACAATTGAAGAGAGAGAGTCATTTGAGACAAACTTTTCTAGCAAAGGCCTTGTGGATACTTTCAGAAAACAGCACCCTAATGCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCATAACCAACAAAGGTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTTCATGATTCATACATTCTTCCTGATGTATCATTCAGCGACCACAGTCCAATTGGCCTGGTACTGAAGCTATAGTATCGGCGAGACTCTAAAATTCGAGACCTTACTGAAGCCAACTGTACATAATCACTTGACAAATGCTTATATAAATCTTTGGCCAGCCTGAAATGTTGCAAGATGTGGTAGAGTTAGTCTCCATATCCATTTGCCAGTCAATATTACGATTTGTTCTGTCAGTCTGTCAGGTGTTCGTCCTGAGACCTTCTGTATATAACGCGATGCATTTGTTTGCTGTCTCTGGGCCAAACTTTCAAAAA ]
[+] EMBL BI807228 [ TAACTGGGATCCCGTGTTTCAGCAACTATTGT AAAATACCTGGAAAAGTCGAAACCAGTGATTTGTTTGCAGGAGACCTTAACTGTGCCTCGTCAA CATGTGACATTCACCATCCTCCA CCAAAACCAAGTCT CAGGTTTCACAATTGAAGAGAGAGAGTCATTTGAGAC AACTTTTCTAGCAAAGGCCTTGTGGATACTTTCAGAAAACAGCACCCTAATGCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCATAACC ACAAAGGTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTTCATGATTCATACATTCTTCCTGATGTATCATTCAGCGACCACAGTCC ATTGGCCTGGTACTGAAGCTATAGTATCGGCGAGACTCTAAAATTCGAGACCTTACTGAA CCAACTGTACATAATCCCTTGAC AATGCTTATATAAATCTTTGGCCAGCCTGAAATGTTGCAAGATGTGGTAGAGTTAGTCTCCATATCCATTTGCCAGTCAATATTACGATTTGTTCTGTCAGTCTGTCAGGTGTTCGTCCTGAGACCTTCTGTATATAACGCGANGCCTTTGTTTcaaaa ]
[+] EMBL C97677 [ GGAATCTATTACCGACAAGGTTCATGATNCATACATTCTTCCTGATGTATCATTCAGCGACCACAGTCCAATTGGCCTGGTACTGAAGCTATAGTATCGGCGAGACTCTAAAANTCGAGACCTNACTGAAGCCAACTGTACATAANCACTTGACAAATGCTTATATAAATCTTTGGCCAGCCTGAAATGTTGCAAGATGTGGTAGAGTTAGTCTCCATATCCATTTGCCAGTCAANANTACGATTTGTTCTGTCAGTCTGTCAGGTGTTCGTCCTGAGACCTTCTGTATATAACGCGATGCATTTGTTTGCTGTCTCTGGGCCAAACTTTCAAAAA ]
consensusID : consensus_11378#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 811 fasta sequence
[CAAGGGGGGCTTTCCTCCCGATCACCCAGACGCATTCTGCTTTCGTCTCCAGAGGCAGACAAGAACTGTGGCATTAACAAGGACAAAGATGTCAAGCATGGCAGGCTTGGGAGCTTCTCAGCATGGATATCCTCCCCGAAGTCATGAGCCCTGGACTAAACTTGTACACAGAGAGAGATTACCCGAGTGGTTTGCATACAATCCAAAGACCATGAGGCCTCCACCACTTAGCCATGATACCAAGTGCATGAAGATTTTATCCTGGAATATTAACGGGCTTCATGATGTTGTAACGACAAAGGGGTTTTCTGCACGTGACTTGGCTCAGAGAGAGAATTTTGATGTGTTATGTCTTCAAGAGACACATTTGGAGGAAAAGGATGTTGAAAAGTTTAAGAATCTGATAGCAGACTATGACAGCTATTGGTCATGCAGCGTCTCGAGGCTTGGCTATTCAGGGACTGCTGTAATTTCACGGGTTAAACCAATTTCTGTCCAATACGGGATTGGCATACGTGAACATGATCATGAGGGCAGGGTTATTACTCTGGAGTTTGATGGTTTTTACTTGGTAAATGCCTATGTTCCAAATTCTGGTCGTTTTCTACGTAGACTGAATTACAGGGTCAATAACTGGGATCCGTGTTTCAGCAACTATGTAAAAATACTGGGAAAAGTCGAAACCAGTGATTGGTGCAGGAGACCTTAACTGTGCTCGTCAAAGCATTGACATTCACAATCCTNCAGCAAAAACCAAGTCTGGCAGGTTTCACAATTGGAAGAGAGAGAGTCATTTGAGACAAACNTTTTC]
[+] EMBL CA764589 [CAAGGGGGGCTTTCCTCCCGATCACCCAGACGCATTCTGCTTTCGTCTCCAGAGGCAGACAAGAACTGTGGCATTAACAAGGACAAAGATGTCAAGCATGGCAGGCTTGGGAGCTTCTCAGCATGGATATCCTCCCCGAAGTCATGAGCCCTGGACTAAACTTGTACACAGAGAGAGATTACCCGAGTGGTTTGCATACAATCCAAAGACCATGAGGCCTCCACCACTTAGCCATGATACCAAGTGCATGAAGATTTTATCCTGGAATATTAACGGGCTTCATGATGTTGTAACGACAAAGGGGTTTTCTGCACGTGACTTGGCTCAGAGAGAGAATTTTGATGTGTTATGTCTTCAAGAGACACATTTGGAGGAAAAGGATGTTGAAAAGTTTAAGAATCTGATAGCAGACTATGACAGCTATTGGTCATGCAGCGTCTCGAGGCTTGGCTATTCAGGGACTGCTGTAATTTCACGGGTTAAACCAATTTCTGTCCAATACGGGATTGGCATACGTGAACATGATCATGAGGGCAGGGTTATTACTCTGGAGTTTGATGGTTTTTACTTGGTAAATGCCTATGTTCCAAATTCTGGTCGTTTTCTACGTAGACTGAATTACAGGGTCAATAACTGGGATCCGTGTTTCAGCAACTATGTAAAAATACTGGGAAAAGTCGAAACCAGTGATTGGTGCAGGAGACCTTAACTGTGCTCGTCAAAGCATTGACATTCACAATCCTNCAGCAAAAACCAAGTCTGGCAGGTTTCACAATTGGAAGAGAGAGAGTCATTTGAGACAAACNTTTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11378#0 TTCTGCTTTCGTCTCCAGAGGTTCGTCTTCTTCTCCTTCCCCCAGCTTTGCGCCTTCGCG 60
consensus_11378#1 ------------------------------------------------------------
consensus_11378#0 CAGCCGCGTAATCTCGTCTGCCCTCGCTGCTGGATGTCGGCGATCCGCGCCTCTTCTCAC 120
consensus_11378#1 --------CAAGGGGGGCTTTCCTCCCGATCACCCAGACGCATTCTGCTTTCGTCTCCAG 52
** * ** **** * ** ** ** * **
consensus_11378#0 CGGCT-ACAAGAACTGTGGCATTAACAAGGACAAAGATGTCAAGCATGGCAGGCTTGGGA 179
consensus_11378#1 AGGCAGACAAGAACTGTGGCATTAACAAGGACAAAGATGTCAAGCATGGCAGGCTTGGGA 112
*** ******************************************************
consensus_11378#0 GCTTCTCAGCATGGATATCCTCCCCGAAGTCATGAGCCCTGGACTAAACTTGTACACAGA 239
consensus_11378#1 GCTTCTCAGCATGGATATCCTCCCCGAAGTCATGAGCCCTGGACTAAACTTGTACACAGA 172
************************************************************
consensus_11378#0 GAGAGATTACCCGAGTGGTTTGCATACAATCCAAAGACCATGAGGCCTCCACCACTTAGC 299
consensus_11378#1 GAGAGATTACCCGAGTGGTTTGCATACAATCCAAAGACCATGAGGCCTCCACCACTTAGC 232
************************************************************
consensus_11378#0 CATGATACCAAGTGCATGAAGATTTTATCCTGGAATATTAACGGGCTTCATGATGTTGTA 359
consensus_11378#1 CATGATACCAAGTGCATGAAGATTTTATCCTGGAATATTAACGGGCTTCATGATGTTGTA 292
************************************************************
consensus_11378#0 ACGACAAAGGGGTTTTCTGCACGTGACTTGGCTCAGAGAGAGAATTTTGATGTGTTATGT 419
consensus_11378#1 ACGACAAAGGGGTTTTCTGCACGTGACTTGGCTCAGAGAGAGAATTTTGATGTGTTATGT 352
************************************************************
consensus_11378#0 CTTCAAGAGACACATTTGGAGGAAAAGGATGTTGAAAAGTTTAAGAATCTGATAGCAGAC 479
consensus_11378#1 CTTCAAGAGACACATTTGGAGGAAAAGGATGTTGAAAAGTTTAAGAATCTGATAGCAGAC 412
************************************************************
consensus_11378#0 TATGACAGCTATTGGTCATGCAGCGTCTCGAGGCTTGGCTATTCAGGGACTGCAGTAATT 539
consensus_11378#1 TATGACAGCTATTGGTCATGCAGCGTCTCGAGGCTTGGCTATTCAGGGACTGCTGTAATT 472
***************************************************** ******
consensus_11378#0 TCACGGGTTAAACCCAATTTCTGTCCAATACGGGATTGGCATACGTGAACATGATCATGA 599
consensus_11378#1 TCACGGGTTAAACC-AATTTCTGTCCAATACGGGATTGGCATACGTGAACATGATCATGA 531
************** *********************************************
consensus_11378#0 GGGCAGGGTTATTACTCTGGAGTTTGATGGTTTTTACTTGGTAAATGCCTATGTTCCAAA 659
consensus_11378#1 GGGCAGGGTTATTACTCTGGAGTTTGATGGTTTTTACTTGGTAAATGCCTATGTTCCAAA 591
************************************************************
consensus_11378#0 TTCTGGTCGTTTTCTACGTAGACTGAATTACAGGGTCAATAACTGGGATCCGTGTTTCAG 719
consensus_11378#1 TTCTGGTCGTTTTCTACGTAGACTGAATTACAGGGTCAATAACTGGGATCCGTGTTTCAG 651
************************************************************
consensus_11378#0 CAACTATGTAAAAATACTGG-AAAAGTCGAAACCAGTGATTGTTGCAGGAGACCTTAACT 778
consensus_11378#1 CAACTATGTAAAAATACTGGGAAAAGTCGAAACCAGTGATTGGTGCAGGAGACCTTAACT 711
******************** ********************* *****************
consensus_11378#0 GTGCTCGTCAAAGCATTGACATTCACAATCCTCCAGCAAAAACCAAGTCTG-CAGGTTTC 837
consensus_11378#1 GTGCTCGTCAAAGCATTGACATTCACAATCCTNCAGCAAAAACCAAGTCTGGCAGGTTTC 771
******************************** ****************** ********
consensus_11378#0 ACAATTG-AAGAGAGAGAGTCATTTGAGACAAACTTTTCTAGCAAAGGCCTTGTGGATAC 896
consensus_11378#1 ACAATTGGAAGAGAGAGAGTCATTTGAGACAAACNTTTTC-------------------- 811
******* ************************** ***
consensus_11378#0 TTTCAGAAAACAGCACCCTAATGCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCAT 956
consensus_11378#1 ------------------------------------------------------------
consensus_11378#0 AACCAACAAAGGTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGT 1016
consensus_11378#1 ------------------------------------------------------------
consensus_11378#0 TCATGATTCATACATTCTTCCTGATGTATCATTCAGCGACCACAGTCCAATTGGCCTGGT 1076
consensus_11378#1 ------------------------------------------------------------
consensus_11378#0 ACTGAAGCTATAGTATCGGCGAGACTCTAAAATTCGAGACCTTACTGAAGCCAACTGTAC 1136
consensus_11378#1 ------------------------------------------------------------
consensus_11378#0 ATAATCACTTGACAAATGCTTATATAAATCTTTGGCCAGCCTGAAATGTTGCAAGATGTG 1196
consensus_11378#1 ------------------------------------------------------------
consensus_11378#0 GTAGAGTTAGTCTCCATATCCATTTGCCAGTCAATATTACGATTTGTTCTGTCAGTCTGT 1256
consensus_11378#1 ------------------------------------------------------------
consensus_11378#0 CAGGTGTTCGTCCTGAGACCTTCTGTATATAACGCGATGCATTTGTTTGCTGTCTCTGGG 1316
consensus_11378#1 ------------------------------------------------------------
consensus_11378#0 CCAAACTTTCAAAAACATTTTATCATGAA 1345
consensus_11378#1 -----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||