These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11386#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1001 fasta sequence [TCCTCCTCTACTACTCCAAGTCGTTTTTATCGAATTTTTAATGCGGATGACTAATCACTTCATCAGAAACACGATAGAACACGGCAATAACATATGGGTCGTTTCTTCCCTCCGTCCACCTACCGCTTGTTCCCCTAATTGATCTCTCCCCATGGCAACCCTCACGCTGCCGGCGACCGGAGCCGCCGCGCAACCCGGCCAGGAAGACCCAAGCGGGATCAAGAATCCTGGCGATGGTGCGGGAGATTCGAGCGGCATCGACTCCGGATGGGTTGTTCTGGGGAAATCTGACATAGTTCCGGCGGATTTGGCTGCCGCTGCCGCTGACGCCGGCCACCGACAGCTTGGGTTCTCGCCGTTACCGATGCTTCCAATTTGGGTGCAGATGGTGCTTGGAGGCGTAGTCTACACGGCCGTGCCGTTCTACAATAGGGCCAGGAAAGCCGAAGATGAGGTGACAAAAAATGTGGAAACTGCATTGGAGGTTGTGGAGCACGCCGCGGAGGTGACAGAGAAGTTAGCTGCTAATGTGGCCAATGCTCTA-CCAGAGAATGGTA-CCCTGCATAAGTTGG-CCGAGGAGGTTGAGTACA-TTGCTGAGA-TAGTGGAT-AAGGATGCAC-AGAAGGTTGAAA-TCATCATAAAGA-AGATTGAAGA-TGTCAGCAATCGGATAGACG-CTGC-TG-TGGAGCCTGTCATTGAAGAGCTCG-AAAA-GGAATTCAAACCATAGCCAAGCATCTGGT-GGATCAGAAGGCCC-AAAATTATTCTTGTTGTAAATATCGTTATTTTCTATTTTGTTCTTTCTAAGCATCTATTGTGT-ACATATATATTGTGATGCCCTAAAATGA--AACCA-CGCCGT-AG-TTCTAGCAAGACTAGGTGATG--GTGTGTTGGATGCTCGAAGCTGAAGCATCCTGTAATCTCGTTGTAAAATACAACTGAAGATCTAAAACAGTATATCGGATTGA-AACTTGAAAGAACATATTCTTCTGCTGTT------AAAAAAAAAAAAAAAA] [+] EMBL AK120990 [TCCTCCTCTACTACTCCAAGTCGTTTTTATCGAATTTTTAATGCGGATGACTAATCACTTCATCAGAAACACGATAGAACACGGCAATAACATATGGGTCGTTTCTTCCCTCCGTCCACCTACCGCTTGTTCCCCTAATTGATCTCTCCCCATGGCAACCCTCACGCTGCCGGCGACCGGAGCCGCCGCGCAACCCGGCCAGGAAGACCCAAGCGGGATCAAGAATCCTGGCGATGGTGCGGGAGATTCGAGCGGCATCGACTCCGGATGGGTTGTTCTGGGGAAATCTGACATAGTTCCGGCGGATTTGGCTGCCGCTGCCGCTGACGCCGGCCACCGACAGCTTGGGTTCTCGCCGTTACCGATGCTTCCAATTTGGGTGCAGATGGTGCTTGGAGGCGTAGTCTACACGGCCGTGCCGTTCTACAATAGGGCCAGGAAAGCCGAAGATGAGGTGACAAAAAATGTGGAAACTGCATTGGAGGTTGTGGAGCACGCCGCGGAGGTGACAGAGAAGTTAGCTGCTAATGTGGCCAATGCTCTA CCAGAGAATGGTA CCCTGCATAAGTTGG CCGAGGAGGTTGAGTACA TTGCTGAGA TAGTGGAT AAGGATGCAC AGAAGGTTGAAA TCATCATAAAGA AGATTGAAGA TGTCAGCAATCGGATAGACG CTGC TG TGGAGCCTGTCATTGAAGAGCTCG AAAA GGAATTCAAACCATAGCCAAGCATCTGGT GGATCAGAAGGCCC AAAATTATTCTTGTTGTAAATATCGTTATTTTCTATTTTGTTCTTTCTAAGCATCTATTGTGT ACATATATATTGTGATGCCCTAAAATGA AACCA CGCCGT AG TTCTAGCAAGACTAGGTGATG GTGTGTTGGATGCTCGAAGCTGAAGCATCCTGTAATCTCGTTGTAAAATACAACTGAAGATCTAAAACAGTATATCGGA ] [+] EMBL OSS1325A [ ATATGGGTCGTTTCTTCCCTCCGTCCACCTACCGCTTGTTCCCCTAATTGATCTCTCCCCATGGCAACCCTCACGCTGCCGGCGACCGGAGCCGCCGCGCAACCCGGCCAGGAAGACCCAAGCGGGATCAAGAATCCTGGCGATGGTGCGGGAGATTCGAGCGGCATCGACTCCGGATGGGTTGTTCTNGGGAAATCTGACATAGTTC ] [+] EMBL OSR26381A [ CTCCGTCCACCTACCGCTTGTTCCCCTAATTGATCTCTCCCCATGGCAACCCTCACGCTGCCGGCGACCGGAGCCGCCGCGCAACCCGGCCAGGAAGACCCAAGCGGGATCAAGAATCCTGGCGATGGTGCGGGAGATTCGAGCGGCATCGACTCCGGATGGGTTGTTCTGGGGAAATCTGACATAGTTCCGGCGGATTTGGCTGCCGCTGCCGCTGACGCCGGCCACCGACAGCTTGGGTTCTCGCCGTTACCGATGCTTCCAATTTGGGTGCAGATGGTGCTTNGAGGCGTAGTCT ] [+] EMBL BI805369 [ CAATGCTCTATCCGGAGTAT GTACCCCTGCATAAGTTGGCCCGAGGA GTTGAGTACACTTGCTGAGA TAGTGGAT AAGGATGCACAAGAAGGTTGAAA TCATCATAAAGA AGATTGAAGA TGTCAGC ATCGGATAGACG CTGC TGTTGGAGCCTGTCATTGAAGAGCTCG AAAA GGAATTCAAACCATAGCCAAGCATCTGGT GGATCAGAAGGCCC AAATTATTCTTGTTGTAAATATCGTTATTTTCTATTTTGTTCTTTCTAAGCATCTATTGTGT ACATATATATTGTGATGCCCTAAAATGA AACCA CGCCGT AG TTCTAGC AGACTAGGTGATGATGTGTGTTGGATGCTCGAAGCTGAAGCATCCTGTAATCTCGTTGTAAAATACAACTGAAGATCTAAAACAGTATATCGGATTGA AACTTGAAAGAACATATTCTTCTGCTGTTGTTTCCAAAAAAAAAAAAAAAA] [+] EMBL AU082708 [ TAAGTTGGCCCGAGGAGGTTGAGTACA TTGCTGAGACTAGTGGATCAAGGATGCAC AGAAGGTTGAAANTCATCATAAAGACAGATTGAAGATTGTCAGCAATCGGATAGACGCCTGCTTG TGGAGCCTGTCATTGAAGAGCTCG AAAACGGAATTCAAACCATAGCCAAGCATCTGGT GGATCAGAAGGCCC AAAATTATTCTTGTTGTAAATATCGTTATTTTCTATTTTGTTCTTTCTAAGCATCTATTGTGT ACATATATATTGTGATGCCCTAAAATGA AACCA CGCCGT AG TTCTAGCAAGACTAGGTGATG GTGTGTTGGATGCTCGAAGCTGAAGCATCCTGTAATCTCGTTGTAAAATACAACTGAAGATCTAAAACAGTATATCGGATTGA AACTTGAAAGAACATATTCTTCTGCTGTT AAAAAAAAActagttc] [+] EMBL BI805449 [ CCGAGGAGGTTGAGTACA TT CTGAGA TAGTGGAT AAGGATGCAC AGAAGGTTGAAA TCATCATAAAGA AGATTGAAGA TGTCAGCCATCGGATAGACG CTGC TG TGGAGCCTGTCATTGAAGAGCTCGTAAAA GGAATTCAAACCATAGCC AGCATCTGGTGGGATCAGAAGGCCCTCAAATTATTCTTGTTGTAAATATCGTTATTTTCTATTTTGTTCTTTCTAAGCATCTATTGTGTGACATATATATTGTGATGCCCTAAAATGACCACCCACCCCCGTGAGTTTCTAGC AGACTAGGTGATGATGTGTGTTGGATGCTCGAAGCTGAAGCATCCTGTAATCTCGTTGTAAAATACAACTGAAGATNTAAAACAGTATATCGGATTGATAACTTGAAAAAAaaaa ] consensusID : consensus_11386#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 476 fasta sequence [AGGGTGACAGAGAAGTTACTGCTAATGTGCCCATGCTCTACCAGAGAATGGTACCCTNGCATAAGTTGCCGAGGAGTTGAGTACACTTGCTGAGATATTGTATAAGGATGCC-CAGAAGGTT-GAAATCATCATAAAGAAGATTGAAGATGTCACC--ATCGGATAGACGCTGCTGTGGAGCCTGTCA-T-TGAAGAGCTCGAAAAGGAATT-CAACCATAGCCA-AGCATCTGGTGGATCAGAAGGCCCCAAATTATTCTTGTTGTAAATATCGTTATTTTCTATTTTGTTCTTTCTAAGCATCTATTGTGTACATATATATTGTGATGCCCTAAAATGAAACCCCNCCGTAGTTCTAGCNAGACTAGGTGATGATGTGTGTTGGATGCTCGAAGCTGAAGCA-TCCTGTAATCTCGTTGTAAAATACCACTGAAGATCTAAACCAGTATATCGGATTGAAACTTGAAAGANCCAAAAAAAAAA] [+] EMBL BM038559 [AGGGTGACAGAGAAGTTACTGCTAATGTGCCCATGCTCTACCAGAGAATGGTACCCTNGCATAAGTTGCCGAGGAGTTGAGTACACTTGCTGAGATATTGTATAAGGATGCC CAGAAGGTT GAAATCATCATAAAGAAGATTGAAGATGTCACC ATCGGATAGACGCTGCTGTGGAGCCTGTCA T TGAAGAGCTCGAAAAGGAATT CAACCATAGCCA AGCATCTGGTGGATCAGAAGGCCCCAAATTATTCTTGTTGTAAATATCGTTATTTTCTATTTTGTTCTTTCTAAGCATCTATTGTGTACATATATATTGTGATGCCCTAAAATGAAACCCCNCCGTAGTTCTAGCNAGACTAGGTGATGATGTGTGTTGGATGCTCGAAGCTGAAGCA TCCTGTAATCTCGTTGTAAAATACCACTGAAGATCTAAACCAGTATATCGGATTGAAACTTGAAAGANCCAAAAAAAAAA] [+] EMBL BI811513 [ ggTGGATAAGGATCCCACAGAAGTTTGGAAATCATCATAAAGAAGATTGAAGATGTCACCATATCGGATAGACCTTCCTGTGGAGCCTGTCACTGTGAAGAGCTCGAAAAGGAATTCCAACCATAGCCACAGCATCTGGTGGATCAGAAGGCCCCAAATTATTCTTGTTGTAAATATCGTTATTTTCTATTTTGTTCTTTCTAAGCATCTATTGTGTACATATATATTGTGATGCCCTAAAATGAAACCCC CCGTAGTTCTAGC AGACTAGGTGATGATGTGTGTTGGATGCTCGAAGCTGAAGCACTCCTGTAATCTCGTTGTAAAATA CACTGAAGATCTAAACCAGTATATCGGATTGAAACTTGAAAGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11386#0 TCCTCCTCTACTACTCCAAGTCGTTTTTATCGAATTTTTAATGCGGATGACTAATCACTT 60 consensus_11386#1 ------------------------------------------------------------ consensus_11386#0 CATCAGAAACACGATAGAACACGGCAATAACATATGGGTCGTTTCTTCCCTCCGTCCACC 120 consensus_11386#1 ------------------------------------------------------------ consensus_11386#0 TACCGCTTGTTCCCCTAATTGATCTCTCCCCATGGCAACCCTCACGCTGCCGGCGACCGG 180 consensus_11386#1 ------------------------------------------------------------ consensus_11386#0 AGCCGCCGCGCAACCCGGCCAGGAAGACCCAAGCGGGATCAAGAATCCTGGCGATGGTGC 240 consensus_11386#1 ------------------------------------------------------------ consensus_11386#0 GGGAGATTCGAGCGGCATCGACTCCGGATGGGTTGTTCTGGGGAAATCTGACATAGTTCC 300 consensus_11386#1 ------------------------------------------------------------ consensus_11386#0 GGCGGATTTGGCTGCCGCTGCCGCTGACGCCGGCCACCGACAGCTTGGGTTCTCGCCGTT 360 consensus_11386#1 ------------------------------------------------------------ consensus_11386#0 ACCGATGCTTCCAATTTGGGTGCAGATGGTGCTTGGAGGCGTAGTCTACACGGCCGTGCC 420 consensus_11386#1 ------------------------------------------------------------ consensus_11386#0 GTTCTACAATAGGGCCAGGAAAGCCGAAGATGAGGTGACAAAAAATGTGGAAACTGCATT 480 consensus_11386#1 ------------------------------------------------------------ consensus_11386#0 GGAGGTTGTGGAGCACGCCGCGGAGGTGACAGAGAAGTTAGCTGCTAATGTGGCCAATGC 540 consensus_11386#1 ----------------------AGGGTGACAGAGAAGTTA-CTGCTAATGTG-CCCATGC 36 **************** *********** ** **** consensus_11386#0 TCTACCAGAGAATGGTACCCTG-CATAAGTTGGCCGAGGAGGTTGAGTACA-TTGCTGAG 598 consensus_11386#1 TCTACCAGAGAATGGTACCCTNGCATAAGTTG-CCGAGGAG-TTGAGTACACTTGCTGAG 94 ********************* ********* ******** ********* ******** consensus_11386#0 ATAGTGGATAAGGATGCACAGAAGGTTGAAATCATCATAAAGAAGATTGAAGATGTCAGC 658 consensus_11386#1 ATATTGTATAAGGATGCCCAGAAGGTTGAAATCATCATAAAGAAGATTGAAGATGTCACC 154 *** ** ********** **************************************** * consensus_11386#0 AATCGGATAGACGCTGCTGTGGAGCCTGTCATTGAAGAGCTCGAAAAGGAATTCAAACCA 718 consensus_11386#1 A-TCGGATAGACGCTGCTGTGGAGCCTGTCATTGAAGAGCTCGAAAAGGAATTCAA-CCA 212 * ****************************************************** *** consensus_11386#0 TAGCCAAGCATCTGGTGGATCAGAAGGCCCAAAATTATTCTTGTTGTAAATATCGTTATT 778 consensus_11386#1 TAGCCAAGCATCTGGTGGATCAGAAGGCCCCAAATTATTCTTGTTGTAAATATCGTTATT 272 ****************************** ***************************** consensus_11386#0 TTCTATTTTGTTCTTTCTAAGCATCTATTGTGTACATATATATTGTGATGCCCTAAAATG 838 consensus_11386#1 TTCTATTTTGTTCTTTCTAAGCATCTATTGTGTACATATATATTGTGATGCCCTAAAATG 332 ************************************************************ consensus_11386#0 AAACCACGCCGTAGTTCTAGCAAGACTAGGTGATG--GTGTGTTGGATGCTCGAAGCTGA 896 consensus_11386#1 AAACCCCNCCGTAGTTCTAGCNAGACTAGGTGATGATGTGTGTTGGATGCTCGAAGCTGA 392 ***** * ************* ************* *********************** consensus_11386#0 AGCATCCTGTAATCTCGTTGTAAAATACAACTGAAGATCTAAAACAGTATATCGGATTGA 956 consensus_11386#1 AGCATCCTGTAATCTCGTTGTAAAATACCACTGAAGATCTAAACCAGTATATCGGATTGA 452 **************************** ************** **************** consensus_11386#0 AACTTGAAAGAACATATTCTTCTGCTGTTAAAAAAAAAAAAAAAA 1001 consensus_11386#1 AACTTGAAAGANC---------------CAAAAAAAAAA------ 476 *********** * ********** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||