These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_114#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 457 fasta sequence [GTTTTTTATGGATCTCGAGATCGACAATGCATGGAGGAGAGCAGTATCCACGCCGCCACCTCCTCCATAGCAATTCTACGCCGTCGTCGTCTCTTCCACCGTGCAGCCCCTTGTCCCAATCCTCCACGGCGGCCTGCGGTCCGGGACTGGAGTGCTGACATCCAATTTGCAGTGGCGGCGAGGAGGAGAGGCGACGGTCATGGCGCTCGGTGGAGCAGTTGAATGGTCCAGGGAGGAGTGACGGCAAGGATGGCTTCATGGTGGTGACGACGATAATGAGGCAAAGCACAGATTCTGGGGAGACTTGGCACAGCAAGCCAAAGTTTGCGCATGTTTCAAACGGAATGTTGAGAAGCATCGATTTAATAGTAATTTAGTTACTAAGAGACAATATGTTGTTGAGCTATCAGTGTAATAGTAACTTGGTTACTATGAGAAACTTTGTGGCAAGATCAAT] [+] EMBL AK121467 [GTTTTTTATGGATCTCGAGATCGACAATGCATGGAGGAGAGCAGTATCCACGCCGCCACCTCCTCCATAGCAATTCTACGCCGTCGTCGTCTCTTCCACCGTGCAGCCCCTTGTCCCAATCCTCCACGGCGGCCTGCGGTCCGGGACTGGAGTGCTGACATCCAATTTGCAGTGGCGGCGAGGAGGAGAGGCGACGGTCATGGCGCTCGGTGGAGCAGTTGAATGGTCCAGGGAGGAGTGACGGCAAGGATGGCTTCATGGTGGTGACGACGATAATGAGGCAAAGCACAGATTCTGGGGAGACTTGGCACAGCAAGCCAAAGTTTGCGCATGTTTCAAACGGAATGTTGAGAAGCATCGATTTAATAGTAATTTAGTTACTAAGAGACAATATGTTGTTGAGCTATCAGTGTAATAGTAACTTGGTTACTATGAGAAACTTTGTGGCAAGATCAAT] consensusID : consensus_114#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 440 fasta sequence [ATGGAGGAGAGCAGTATCCACGCCGCCACCTCCTCCATAGCAATTCTACGCCGTCGTCGTCTCTTCCACCGTGCAGCCCCTTGTCCCAATCCTCCACGGCGGCCTGCGGTCCGGGACTGGAGTGCTGACATCCAATTTGCAGTGGCGGCGAGGAGGAGAGGCGACGGTCATGGTGCTCGGTGGAGCAGTTGAATGGTGCATGTTTGTTCGATCGCTTGGCTTTTTACTCACTCTAATCTAATCTTGATACTATCGTTGAATTGATCTGAATCCACCCGTCTGCACGTACACATACGTGCCCTCGATCGAGTGTTAGATTGCGCAATTAGTTGGTGTTTTATTTTGCTACATGATCTGTCTGCTCGATTGATCTCTATAGGCTATAGCTTCTGNCTTTCTTTGGAGGAAGCACAGCTGCTGGTGGTTAAGNCAACTAATTG] [+] EMBL C72724 [ATGGAGGAGAGCAGTATCCACGCCGCCACCTCCTCCATAGCAATTCTACGCCGTCGTCGTCTCTTCCACCGTGCAGCCCCTTGTCCCAATCCTCCACGGCGGCCTGCGGTCCGGGACTGGAGTGCTGACATCCAATTTGCAGTGGCGGCGAGGAGGAGAGGCGACGGTCATGGTGCTCGGTGGAGCAGTTGAATGGTGCATGTTTGTTCGATCGCTTGGCTTTTTACTCACTCTAATCTAATCTTGATACTATCGTTGAATTGATCTGAATCCACCCGTCTGCACGTACACATACGTGCCCTCGATCGAGTGTTAGATTGCGCAATTAGTTGGTGTTTTATTTTGCTACATGATCTGTCTGCTCGATTGATCTCTATAGGCTATAGCTTCTGNCTTTCTTTGGAGGAAGCACAGCTGCTGGTGGTTAAGNCAACTAATTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_114#0 GTTTTTTATGGATCTCGAGATCGACAATGCATGGAGGAGAGCAGTATCCACGCCGCCACC 60 consensus_114#1 ------------------------------ATGGAGGAGAGCAGTATCCACGCCGCCACC 30 ****************************** consensus_114#0 TCCTCCATAGCAATTCTACGCCGTCGTCGTCTCTTCCACCGTGCAGCCCCTTGTCCCAAT 120 consensus_114#1 TCCTCCATAGCAATTCTACGCCGTCGTCGTCTCTTCCACCGTGCAGCCCCTTGTCCCAAT 90 ************************************************************ consensus_114#0 CCTCCACGGCGGCCTGCGGTCCGGGACTGGAGTGCTGACATCCAATTTGCAGTGGCGGCG 180 consensus_114#1 CCTCCACGGCGGCCTGCGGTCCGGGACTGGAGTGCTGACATCCAATTTGCAGTGGCGGCG 150 ************************************************************ consensus_114#0 AGGAGGAGAGGCGACGGTCATGGCGCTCGGTGGAGCAGTTGAATGGTCCAGGGAGGAGTG 240 consensus_114#1 AGGAGGAGAGGCGACGGTCATGGTGCTCGGTGGAGCAGTTGAATGGTGCATGTTTGTTCG 210 *********************** *********************** ** * * * consensus_114#0 ACGGCAAGGATGGCTTCATGGTGGTGACGACGATAATGAGGCAAAGCACAGATTCTGGGG 300 consensus_114#1 ATCGC----TTGGCTTTTTACTCACTCTAATC-TAAT----CTTGATACTATCGTTGAAT 261 * ** ****** * * * **** * ** ** consensus_114#0 AGACTTGGCACAGCAAGCCAAAGTTTGCGCAT----GTTTCAAACGGAATGTTGAGAAGC 356 consensus_114#1 TGATCTGAATCCACCCGTCTGCACGTACACATACGTGCCCTCGATCGAGTGTTAGATTGC 321 ** ** * * * * * * *** * * ** **** ** consensus_114#0 ATCGATTTAATAGTAATTTAGTT-ACTAAGAGA-CAATATGTT--GTTGAGCTATCAGTG 412 consensus_114#1 G-CAATTAGTTGGTGTTTTATTTTGCTACATGATCTGTCTGCTCGATTGATCTCTATAGG 380 * *** * ** **** ** *** ** * * ** * **** ** * * consensus_114#0 TAATAGTAACTTGGTTACTATGA--GAAAC-------TTTGTGGCAAGATCAAT------ 457 consensus_114#1 CTATAGCTTCTGNCTTTCTTTGGAGGAAGCACAGCTGCTGGTGGTTAAGNCAACTAATTG 440 **** ** ** ** ** *** * * **** * *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||