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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11410#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 865 fasta sequence
[NNGGACCAGGTTTTTGNTCACCAGCACATTTTGGTACTTGGCAAAGTATGCAGCTGTACCTGTCATAAATGGCCTTACGGACTACAACCATCCATGCCAGATAATGGCTGATGCACTTACTATGCTCGAACACATTGGTCGTATTGAAAACACTAAGGTTGTCTATGTTGGAGACGGGAACAATATTGTCCACTCATGGCTTCGATTGGCTGCTTTATTTCCTTTACATTTTGTATGTGCCTGTCCTAAGGGCTTCGAGCCAGATGCAAAGACTGTGGAGATAGCCAGGAGTGCTGGTAGTAAGATTGAAATAACAGATGACCCTATGGAAGCAGTTAA-GGGAGCA-GATGTT--GTGTATACAGATTTCTGGGCCAGCA-TGGGCCCAAAGGA-GGAA-GCTGAATATAGAAAAAAAGTATTCCA-AGGATTCACGGTGGATGAAGCTATGATGGAGATGGCTGGGCCA-AATGCCTTCC-TTATGCATTGTTTGCCTGCAGAGAGAGGGATAGAGGTAACAGACGGCGCCATT-GAAGCTCCCAACTCAATCGTATTCCCCCAGGCTGAGAACAGAATGCACGCCCAGAATGCTATCATGCTTCACGTCCTTGGTGCTTA-GACCTACAGTCGTGTACCAGTTAAATGAATATTGATATCTGAATGGCGATATCA-TTTCGGTTTTCGCAGTTTCT-CCCTGGGGGCA-GGAGGGGTAGAGATTTTGGAGAAGTTCACTATGTTCAGATGCTTTGGATTGTCTGATAATACTATTTTGTACTTTTCGTGGTAGCTGCTTGTACTGTACCA-GGTCGGTAAATCCTGAATAAATGGCGCACCTTTATAATCCAAAAAAAAAACACCCCCCAAAAAAAAA]
[+] EMBL OSS4443A [NNGGACCAGGTTTTTGNTCACCAGCACATTTTGGTACTTGGCAAAGTATGCAGCTGTACCTGTCATAAATGGCCTTACGGACTACAACCATCCATGCCAGATAATGGCTGATGCACTTACTATGCTCGAACACATTGGTCGTATTGAAAACACTAAGGTTGTCTATGTTGGAGACGGGAACAATATTGTCCACTCATGGCTTCGATTGGCTGCTTTATTTCCTTTACATTTTGTATGTGCCTGTCCTAAGGGCTTCGAGCCAGATGCAAAGACTGTGGAGATAGCCAGGAGTGCTGGTAGTAAGATTGNAATAACAGATGACCCTATGGAAGCAGTTAA ]
[+] EMBL CB633678 [ AACACCTTGGTCGTATTGAAAACACTAAGGTTGTCTATGTTGGAGACGGGAACAATATTGTCCACTCATGGCTTCGATTGGCTGCTTTATTTCCTTTACATTTTGTATGTGCCTGTCCTAAGGGCTTCGAGCCAGATGCAAAGACTGTGGAGATAGCCAGGAGTGCTGGTAGTAAGATTGAAATAACAGATGACCCTATGGAAGCAGTTAA GGGAGCA GATGTT GTGTATACAGATGTCTGGGCCAGCA TGGGCCAAAAGGA GGAA GCTGAATATAGAAAAAAAGTATTCCA AGGATTCACGGTGGATGAAGCTATGATGGAGATGGCTGGGCCA AATGCCTTCC TTATGCATTGTTTGCCTGCAGAGAGAGGGATAGAGGTAACAGACGGCGCCATT GAAGCTCCCAACTCAATCGTATTCCCCCAGGCTGAGAACAGAATGCACGCCCAGAATGCTATCATGCTTCACGTCCTTGGTGCTTA GACCTACAGTCGTGTACCAGTTAAATGAATATTGATATCTGAATGGCGATATCA TTTCGGTTTTCGCAGTTTCT CCCTGGGGGCA GGAGGGGTAGAGATTTTGGAGAAGTTCACTATGTTCAGATGCTTTGGATTGTCTGATAATACTATTTTGTACTTTTCGTGGTAGCTGCTTGTACTGTACCA GGTCGGTAAATCCTGAATAAATGGCGCACC ]
[+] EMBL BI803900 [ AGACTGTGGAGATAGCCAGGAGTGCTGGTAGTAAGATTGAAATAACAGATGACCCTATGGAA CAGTTAA GGGA CA GATGTT GTGTATACAGATGTCTGGGCCAGCA TGGG CCAAAGGA GGAA GCTGAATATAGAAAAAAAGTATTCCA AGGATTCACGGTGGATGAAGCTATGATGGAGATGGCTGGGCCA AATGCCTTCC TTATGCATTGTTTGCCTGCAGAGAGAGGGATAGAGGTAACAGACGGCGCCATT GAAGCTCCCAACTCAATCGTATTCCCCCAGGCTGAGAACAGAATGCACGCCCAGAATGCTATCATGCTTCACGTCCTTGGTGCTTA GACCTACAGTCGTGTACCAGTTAAATGAATATTGATATCTGAATGGCGATATCACTTTCGGTTTTCGCAGTTTCT CCCTGGGGGCACGGAGGGGTAGAGATTTTGGAGAAGTTCACTATGTTCAGATGCTTTGGATTGTCTGATAATACTATTTTGTACTTTTCGTGGTAGCTGCTTGTACTGTACCA GGTCGGTAAATCCTGAATAAATGGCGCACCTTTATAATCCAAAA ]
[+] EMBL BI812906 [ GGAA CA TTAAGGGGAGCA GAT TT GTGTATACAGATTTCT GGCCAGCA TGGGCCAAAGGGA GGAA CTGAATATAGAAAAAAAGTATTCCA AGGATTCACGGTGGATGAAGCTATGATGGAGATGGCTGGGCCC AATGCCTTCC TTATGCATTGTTTGCCTGCAGAGAGAGGGATAGAGG AACAGACGGCGCCATTGGAAGCTCCCAACTCAATCGTATTCCCCCAGGCTGAGAACAGAATGCACGCCCAGAATGCTATCATGCTTCACGTCCTTGGTGCTTA GACCTACAGTCGTGTACCAGTTAAATGAATATTGATATCTGAATGGCGATATCA TTTCGGTTTTCGCAGTTTCTCCCCTGGGGGCA GGA CCCCCAGATTTTGGAGAAGTTCACTATGTTCAGATGCTTTGGATTGTCTGATAATACTATTTTGTACTTTTCGTGGTAGCTGCTTGTACTGTACCA GGTCGGTAAATCCTGAATAAATGGCGCACCTTTATAAAAAAAAAAAAAAACACCCCCCAAAAAAAAA]
[+] EMBL BM420501 [ accCAGTTAA GGGACCACGATGTT GTGTATNCAGATTTCTGGNCCAGCATTGGCCCCAAAGGACGGAACCCTGAATATAGAAAAAAAGTATTCCA AGGATTCACGGTGGATGAAGCTATGATGGAGAT GCTGGGCCA AATGCCTTCC TTATGCATTGTTTGCCTGCAGAGAGAGGGATAGAGGTAACAGACGGCGCCATT GAAGCTCCCAACTCAATCGTATTCCCCCAGGCTGAGAACAGAATGCACGCCCAGAATGCTATCATGCTTCACGTCCTTGGTGCTTA GACCTACAGTCGTGTACCAGTTAAATGAATATTGATATCTGAATGGCGATATCA TTTCGGTTTTCGCAGTTTCT CCCTGGGGGCA GGAGGGGTAGAGATTTTGGAGAAGTTCACTATGTTCAGATGCTTTGGATTGTCTGATAATACTATTTTGTACTTTTCGTGGTAaaaaaaaaa ]
[+] EMBL BI802680 [ CA GATGTTTGGTGTATACAGATTTCT GGCCAACA TGGGCCCAAAGGA GGAA CTGAATATAGAAAAAAAGTATTCCACAGGATTCACGGTGGATGAAGCTATGATGGAGATGTCTGGGCCACAATGCCTTCCGTTATGCCTTGTTTGCCTGCAGAGAGAGGGATAGAGGTAACAGACGGCGCCATT GAAGCTCCCAACTCAATCGTATTCCCCCAGGCTGAGAACAGAATGCACGCCCAGAATGCTATCATGCTTCACGTCCTTGGTGCTTAGGACCTACAGTCGTGTACCAGTTAAATGAATATTGATATCTGAATGGCGATATCA TTTCGGTTTTC CCCCTTCT CCCT GGGGCA GGAGGGGTAGAGATTTTGGAGAAGTTCACTATGTTCAGATGCTTTGGATTGTCTGATAATACTATTTTGTACTTTTCGTGGTAGCTGCTTGTACTGTACCACGGTCGCTAAATCCTGAATAAATGGC CACCTTTATAActc ]
[+] EMBL CA758051 [ AGGTAACAGACGGCGCCATT GAAGCTCCCAACTCAATCGTATTCCCCCAGGCTGAGAACAGAATGCACGCCCAGAATGCTATCATGCTTCACGTCCTTGGTGCTTA GACCTACAGTCGTGTACCAGTTAAATGAATATTGATATCTGAATGGCGATATCA TTTCGGTTTTCGCAGTTTCT CCCTGGGGGCA GGAGGGGTAGAGATTTTGGAGAAGTTCACTATGTTCAGATGCTTTGGATTGTCTGATAATACTATTTTGTACTTTTCGTGGTAGCTGCTTGTACTGTACCA GGTCGGTAAATCCTGAATAAATGGCGCACCTTTATAATC ]
consensusID : consensus_11410#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence
[AGGGCTGAGANACAGAAGTGCAGCGCCCAGAAGTGCTATCATGCTTCAGCGTCCTTGGTGCTTAGACCTACACGTCGTGTACCAGTTAAATGAATATTGATATCTGAATGGCGATATCATNCCCGGTTTTCCAGTTTCTCCCTGGGGCACGGAGGGTTAGAGATTTTGGAGAAGTTCACTATGTTCAGATGCTTTGGATTTCTGATAATACTATTTTGTACTTTTCGTGNTACTGCTTCTACTNTACCAGTTCGTAAATCCTGAATANATGGCCACCTTTATAATCCAAAAAA]
[+] EMBL BM420455 [AGGGCTGAGANACAGAAGTGCAGCGCCCAGAAGTGCTATCATGCTTCAGCGTCCTTGGTGCTTAGACCTACACGTCGTGTACCAGTTAAATGAATATTGATATCTGAATGGCGATATCATNCCCGGTTTTCCAGTTTCTCCCTGGGGCACGGAGGGTTAGAGATTTTGGAGAAGTTCACTATGTTCAGATGCTTTGGATTTCTGATAATACTATTTTGTACTTTTCGTGNTACTGCTTCTACTNTACCAGTTCGTAAATCCTGAATANATGGCCACCTTTATAATCCAAAAAA]
consensusID : consensus_11410#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 280 fasta sequence
[ACAGAATGCAACGCCCAGAATGCTGATCATGGCTTCACGTGCCTTGGTGGCTTAGACCTGACAGTGCGTGTACCAGTTAAATGAATATTGATATCTGAACTGGCCACCATCATTTCGGTTTTCCAGTTTCTCCCTGGGGCAGGAGGGTTAGAGATTTTGGAGAAGTTCACTATGTTCAGATGCTTTGGATNGTCTGATAATACTATTNTGTACTTTTCTGGTACCTGCTTGTACTGTACCAGGTCGGTANCTCCTGAATAAAGGNCGCACCTTTATAAAA]
[+] EMBL BM420590 [ACAGAATGCAACGCCCAGAATGCTGATCATGGCTTCACGTGCCTTGGTGGCTTAGACCTGACAGTGCGTGTACCAGTTAAATGAATATTGATATCTGAACTGGCCACCATCATTTCGGTTTTCCAGTTTCTCCCTGGGGCAGGAGGGTTAGAGATTTTGGAGAAGTTCACTATGTTCAGATGCTTTGGATNGTCTGATAATACTATTNTGTACTTTTCTGGTACCTGCTTGTACTGTACCAGGTCGGTANCTCCTGAATAAAGGNCGCACCTTTATAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11410#0 NNGGACCAGGTTTTTGNTCACCAGCACATTTTGGTACTTGGCAAAGTATGCAGCTGTACC 60
consensus_11410#2 ------------------------------------------------------------
consensus_11410#1 ------------------------------------------------------------
consensus_11410#0 TGTCATAAATGGCCTTACGGACTACAACCATCCATGCCAGATAATGGCTGATGCACTTAC 120
consensus_11410#2 ------------------------------------------------------------
consensus_11410#1 ------------------------------------------------------------
consensus_11410#0 TATGCTCGAACACATTGGTCGTATTGAAAACACTAAGGTTGTCTATGTTGGAGACGGGAA 180
consensus_11410#2 ------------------------------------------------------------
consensus_11410#1 ------------------------------------------------------------
consensus_11410#0 CAATATTGTCCACTCATGGCTTCGATTGGCTGCTTTATTTCCTTTACATTTTGTATGTGC 240
consensus_11410#2 ------------------------------------------------------------
consensus_11410#1 ------------------------------------------------------------
consensus_11410#0 CTGTCCTAAGGGCTTCGAGCCAGATGCAAAGACTGTGGAGATAGCCAGGAGTGCTGGTAG 300
consensus_11410#2 ------------------------------------------------------------
consensus_11410#1 ------------------------------------------------------------
consensus_11410#0 TAAGATTGAAATAACAGATGACCCTATGGAAGCAGTTAAGGGAGCAGATGTTGTGTATAC 360
consensus_11410#2 ------------------------------------------------------------
consensus_11410#1 ------------------------------------------------------------
consensus_11410#0 AGATTTCTGGGCCAGCATGGGCCCAAAGGAGGAAGCTGAATATAGAAAAAAAGTATTCCA 420
consensus_11410#2 ------------------------------------------------------------
consensus_11410#1 ------------------------------------------------------------
consensus_11410#0 AGGATTCACGGTGGATGAAGCTATGATGGAGATGGCTGGGCCAAATGCCTTCCTTATGCA 480
consensus_11410#2 ------------------------------------------------------------
consensus_11410#1 ------------------------------------------------------------
consensus_11410#0 TTGTTTGCCTGCAGAGAGAGGGATAGAGGTAACAGACGGCGCCATTGAAGCTCCCAACTC 540
consensus_11410#2 ------------------------------------------------------------
consensus_11410#1 ------------------------------------------------------------
consensus_11410#0 AATCGTATTCCCCCAGGCTGAGAACAGAA-TGCA-CGCCCAGAA-TGCT-ATCATG-CTT 595
consensus_11410#2 -----------------------ACAGAA-TGCAACGCCCAGAA-TGCTGATCATGGCTT 35
consensus_11410#1 ------------AGGGCTGAGANACAGAAGTGCAGCGCCCAGAAGTGCT-ATCATGCTTC 47
****** **** ********* **** ****** *
consensus_11410#0 CACGT-CCTTGGTG-CTTAGACCT-ACAGT-CGTGTACCAGTTAAATGAATATTGATATC 651
consensus_11410#2 CACGTGCCTTGGTGGCTTAGACCTGACAGTGCGTGTACCAGTTAAATGAATATTGATATC 95
consensus_11410#1 AGCGT-CCTTGGTG-CTTAGACCT-ACACGTCGTGTACCAGTTAAATGAATATTGATATC 104
*** ******** ********* *** *****************************
consensus_11410#0 TGAA-TGGCGAT-ATCATTTCGGTTTTCGCAGTTTCTCCCTGGGGGCAGGAGGGGTAGAG 709
consensus_11410#2 TGAACTGGCCACCATCATTTCGGTTTTC-CAGTTTCTCCCTGGGG-CAGGAGGGTTAGAG 153
consensus_11410#1 TGAA-TGGCGAT-ATCATNCCCGGTTTTCCAGTTTCTCCCTGGGGCACGGAGGGTTAGAG 162
**** **** * ***** * * *** **************** ****** *****
consensus_11410#0 ATTTTGGAGAAGTTCACTATGTTCAGATGCTTTGGATTGTCTGATAATACTATTTTGTAC 769
consensus_11410#2 ATTTTGGAGAAGTTCACTATGTTCAGATGCTTTGGATNGTCTGATAATACTATTNTGTAC 213
consensus_11410#1 ATTTTGGAGAAGTTCACTATGTTCAGATGCTTTGGATT-TCTGATAATACTATTTTGTAC 221
************************************* *************** *****
consensus_11410#0 TTTTCGTGGTAGCTGCTTGTACTGTACCAGGTCGGTAAATCCTGAATAAATGGCGCACCT 829
consensus_11410#2 TTTTC-TGGTACCTGCTTGTACTGTACCAGGTCGGTANCTCCTGAATAAAGGNCGCACCT 272
consensus_11410#1 TTTTCGTGNTA-CTGCTTCTACTNTACCAGTTCG-TAAATCCTGAATANATGGC-CACCT 278
***** ** ** ****** **** ****** *** ** ********* * * * *****
consensus_11410#0 TTATAATCCAAAAAAAAAACACCCCCCAAAAAAAAA 865
consensus_11410#2 TTATAAAA---------------------------- 280
consensus_11410#1 TTATAATCCAAAAAA--------------------- 293
******
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||