These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11410#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 865 fasta sequence [NNGGACCAGGTTTTTGNTCACCAGCACATTTTGGTACTTGGCAAAGTATGCAGCTGTACCTGTCATAAATGGCCTTACGGACTACAACCATCCATGCCAGATAATGGCTGATGCACTTACTATGCTCGAACACATTGGTCGTATTGAAAACACTAAGGTTGTCTATGTTGGAGACGGGAACAATATTGTCCACTCATGGCTTCGATTGGCTGCTTTATTTCCTTTACATTTTGTATGTGCCTGTCCTAAGGGCTTCGAGCCAGATGCAAAGACTGTGGAGATAGCCAGGAGTGCTGGTAGTAAGATTGAAATAACAGATGACCCTATGGAAGCAGTTAA-GGGAGCA-GATGTT--GTGTATACAGATTTCTGGGCCAGCA-TGGGCCCAAAGGA-GGAA-GCTGAATATAGAAAAAAAGTATTCCA-AGGATTCACGGTGGATGAAGCTATGATGGAGATGGCTGGGCCA-AATGCCTTCC-TTATGCATTGTTTGCCTGCAGAGAGAGGGATAGAGGTAACAGACGGCGCCATT-GAAGCTCCCAACTCAATCGTATTCCCCCAGGCTGAGAACAGAATGCACGCCCAGAATGCTATCATGCTTCACGTCCTTGGTGCTTA-GACCTACAGTCGTGTACCAGTTAAATGAATATTGATATCTGAATGGCGATATCA-TTTCGGTTTTCGCAGTTTCT-CCCTGGGGGCA-GGAGGGGTAGAGATTTTGGAGAAGTTCACTATGTTCAGATGCTTTGGATTGTCTGATAATACTATTTTGTACTTTTCGTGGTAGCTGCTTGTACTGTACCA-GGTCGGTAAATCCTGAATAAATGGCGCACCTTTATAATCCAAAAAAAAAACACCCCCCAAAAAAAAA] [+] EMBL OSS4443A [NNGGACCAGGTTTTTGNTCACCAGCACATTTTGGTACTTGGCAAAGTATGCAGCTGTACCTGTCATAAATGGCCTTACGGACTACAACCATCCATGCCAGATAATGGCTGATGCACTTACTATGCTCGAACACATTGGTCGTATTGAAAACACTAAGGTTGTCTATGTTGGAGACGGGAACAATATTGTCCACTCATGGCTTCGATTGGCTGCTTTATTTCCTTTACATTTTGTATGTGCCTGTCCTAAGGGCTTCGAGCCAGATGCAAAGACTGTGGAGATAGCCAGGAGTGCTGGTAGTAAGATTGNAATAACAGATGACCCTATGGAAGCAGTTAA ] [+] EMBL CB633678 [ AACACCTTGGTCGTATTGAAAACACTAAGGTTGTCTATGTTGGAGACGGGAACAATATTGTCCACTCATGGCTTCGATTGGCTGCTTTATTTCCTTTACATTTTGTATGTGCCTGTCCTAAGGGCTTCGAGCCAGATGCAAAGACTGTGGAGATAGCCAGGAGTGCTGGTAGTAAGATTGAAATAACAGATGACCCTATGGAAGCAGTTAA GGGAGCA GATGTT GTGTATACAGATGTCTGGGCCAGCA TGGGCCAAAAGGA GGAA GCTGAATATAGAAAAAAAGTATTCCA AGGATTCACGGTGGATGAAGCTATGATGGAGATGGCTGGGCCA AATGCCTTCC TTATGCATTGTTTGCCTGCAGAGAGAGGGATAGAGGTAACAGACGGCGCCATT GAAGCTCCCAACTCAATCGTATTCCCCCAGGCTGAGAACAGAATGCACGCCCAGAATGCTATCATGCTTCACGTCCTTGGTGCTTA GACCTACAGTCGTGTACCAGTTAAATGAATATTGATATCTGAATGGCGATATCA TTTCGGTTTTCGCAGTTTCT CCCTGGGGGCA GGAGGGGTAGAGATTTTGGAGAAGTTCACTATGTTCAGATGCTTTGGATTGTCTGATAATACTATTTTGTACTTTTCGTGGTAGCTGCTTGTACTGTACCA GGTCGGTAAATCCTGAATAAATGGCGCACC ] [+] EMBL BI803900 [ AGACTGTGGAGATAGCCAGGAGTGCTGGTAGTAAGATTGAAATAACAGATGACCCTATGGAA CAGTTAA GGGA CA GATGTT GTGTATACAGATGTCTGGGCCAGCA TGGG CCAAAGGA GGAA GCTGAATATAGAAAAAAAGTATTCCA AGGATTCACGGTGGATGAAGCTATGATGGAGATGGCTGGGCCA AATGCCTTCC TTATGCATTGTTTGCCTGCAGAGAGAGGGATAGAGGTAACAGACGGCGCCATT GAAGCTCCCAACTCAATCGTATTCCCCCAGGCTGAGAACAGAATGCACGCCCAGAATGCTATCATGCTTCACGTCCTTGGTGCTTA GACCTACAGTCGTGTACCAGTTAAATGAATATTGATATCTGAATGGCGATATCACTTTCGGTTTTCGCAGTTTCT CCCTGGGGGCACGGAGGGGTAGAGATTTTGGAGAAGTTCACTATGTTCAGATGCTTTGGATTGTCTGATAATACTATTTTGTACTTTTCGTGGTAGCTGCTTGTACTGTACCA GGTCGGTAAATCCTGAATAAATGGCGCACCTTTATAATCCAAAA ] [+] EMBL BI812906 [ GGAA CA TTAAGGGGAGCA GAT TT GTGTATACAGATTTCT GGCCAGCA TGGGCCAAAGGGA GGAA CTGAATATAGAAAAAAAGTATTCCA AGGATTCACGGTGGATGAAGCTATGATGGAGATGGCTGGGCCC AATGCCTTCC TTATGCATTGTTTGCCTGCAGAGAGAGGGATAGAGG AACAGACGGCGCCATTGGAAGCTCCCAACTCAATCGTATTCCCCCAGGCTGAGAACAGAATGCACGCCCAGAATGCTATCATGCTTCACGTCCTTGGTGCTTA GACCTACAGTCGTGTACCAGTTAAATGAATATTGATATCTGAATGGCGATATCA TTTCGGTTTTCGCAGTTTCTCCCCTGGGGGCA GGA CCCCCAGATTTTGGAGAAGTTCACTATGTTCAGATGCTTTGGATTGTCTGATAATACTATTTTGTACTTTTCGTGGTAGCTGCTTGTACTGTACCA GGTCGGTAAATCCTGAATAAATGGCGCACCTTTATAAAAAAAAAAAAAAACACCCCCCAAAAAAAAA] [+] EMBL BM420501 [ accCAGTTAA GGGACCACGATGTT GTGTATNCAGATTTCTGGNCCAGCATTGGCCCCAAAGGACGGAACCCTGAATATAGAAAAAAAGTATTCCA AGGATTCACGGTGGATGAAGCTATGATGGAGAT GCTGGGCCA AATGCCTTCC TTATGCATTGTTTGCCTGCAGAGAGAGGGATAGAGGTAACAGACGGCGCCATT GAAGCTCCCAACTCAATCGTATTCCCCCAGGCTGAGAACAGAATGCACGCCCAGAATGCTATCATGCTTCACGTCCTTGGTGCTTA GACCTACAGTCGTGTACCAGTTAAATGAATATTGATATCTGAATGGCGATATCA TTTCGGTTTTCGCAGTTTCT CCCTGGGGGCA GGAGGGGTAGAGATTTTGGAGAAGTTCACTATGTTCAGATGCTTTGGATTGTCTGATAATACTATTTTGTACTTTTCGTGGTAaaaaaaaaa ] [+] EMBL BI802680 [ CA GATGTTTGGTGTATACAGATTTCT GGCCAACA TGGGCCCAAAGGA GGAA CTGAATATAGAAAAAAAGTATTCCACAGGATTCACGGTGGATGAAGCTATGATGGAGATGTCTGGGCCACAATGCCTTCCGTTATGCCTTGTTTGCCTGCAGAGAGAGGGATAGAGGTAACAGACGGCGCCATT GAAGCTCCCAACTCAATCGTATTCCCCCAGGCTGAGAACAGAATGCACGCCCAGAATGCTATCATGCTTCACGTCCTTGGTGCTTAGGACCTACAGTCGTGTACCAGTTAAATGAATATTGATATCTGAATGGCGATATCA TTTCGGTTTTC CCCCTTCT CCCT GGGGCA GGAGGGGTAGAGATTTTGGAGAAGTTCACTATGTTCAGATGCTTTGGATTGTCTGATAATACTATTTTGTACTTTTCGTGGTAGCTGCTTGTACTGTACCACGGTCGCTAAATCCTGAATAAATGGC CACCTTTATAActc ] [+] EMBL CA758051 [ AGGTAACAGACGGCGCCATT GAAGCTCCCAACTCAATCGTATTCCCCCAGGCTGAGAACAGAATGCACGCCCAGAATGCTATCATGCTTCACGTCCTTGGTGCTTA GACCTACAGTCGTGTACCAGTTAAATGAATATTGATATCTGAATGGCGATATCA TTTCGGTTTTCGCAGTTTCT CCCTGGGGGCA GGAGGGGTAGAGATTTTGGAGAAGTTCACTATGTTCAGATGCTTTGGATTGTCTGATAATACTATTTTGTACTTTTCGTGGTAGCTGCTTGTACTGTACCA GGTCGGTAAATCCTGAATAAATGGCGCACCTTTATAATC ] consensusID : consensus_11410#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence [AGGGCTGAGANACAGAAGTGCAGCGCCCAGAAGTGCTATCATGCTTCAGCGTCCTTGGTGCTTAGACCTACACGTCGTGTACCAGTTAAATGAATATTGATATCTGAATGGCGATATCATNCCCGGTTTTCCAGTTTCTCCCTGGGGCACGGAGGGTTAGAGATTTTGGAGAAGTTCACTATGTTCAGATGCTTTGGATTTCTGATAATACTATTTTGTACTTTTCGTGNTACTGCTTCTACTNTACCAGTTCGTAAATCCTGAATANATGGCCACCTTTATAATCCAAAAAA] [+] EMBL BM420455 [AGGGCTGAGANACAGAAGTGCAGCGCCCAGAAGTGCTATCATGCTTCAGCGTCCTTGGTGCTTAGACCTACACGTCGTGTACCAGTTAAATGAATATTGATATCTGAATGGCGATATCATNCCCGGTTTTCCAGTTTCTCCCTGGGGCACGGAGGGTTAGAGATTTTGGAGAAGTTCACTATGTTCAGATGCTTTGGATTTCTGATAATACTATTTTGTACTTTTCGTGNTACTGCTTCTACTNTACCAGTTCGTAAATCCTGAATANATGGCCACCTTTATAATCCAAAAAA] consensusID : consensus_11410#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 280 fasta sequence [ACAGAATGCAACGCCCAGAATGCTGATCATGGCTTCACGTGCCTTGGTGGCTTAGACCTGACAGTGCGTGTACCAGTTAAATGAATATTGATATCTGAACTGGCCACCATCATTTCGGTTTTCCAGTTTCTCCCTGGGGCAGGAGGGTTAGAGATTTTGGAGAAGTTCACTATGTTCAGATGCTTTGGATNGTCTGATAATACTATTNTGTACTTTTCTGGTACCTGCTTGTACTGTACCAGGTCGGTANCTCCTGAATAAAGGNCGCACCTTTATAAAA] [+] EMBL BM420590 [ACAGAATGCAACGCCCAGAATGCTGATCATGGCTTCACGTGCCTTGGTGGCTTAGACCTGACAGTGCGTGTACCAGTTAAATGAATATTGATATCTGAACTGGCCACCATCATTTCGGTTTTCCAGTTTCTCCCTGGGGCAGGAGGGTTAGAGATTTTGGAGAAGTTCACTATGTTCAGATGCTTTGGATNGTCTGATAATACTATTNTGTACTTTTCTGGTACCTGCTTGTACTGTACCAGGTCGGTANCTCCTGAATAAAGGNCGCACCTTTATAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11410#0 NNGGACCAGGTTTTTGNTCACCAGCACATTTTGGTACTTGGCAAAGTATGCAGCTGTACC 60 consensus_11410#2 ------------------------------------------------------------ consensus_11410#1 ------------------------------------------------------------ consensus_11410#0 TGTCATAAATGGCCTTACGGACTACAACCATCCATGCCAGATAATGGCTGATGCACTTAC 120 consensus_11410#2 ------------------------------------------------------------ consensus_11410#1 ------------------------------------------------------------ consensus_11410#0 TATGCTCGAACACATTGGTCGTATTGAAAACACTAAGGTTGTCTATGTTGGAGACGGGAA 180 consensus_11410#2 ------------------------------------------------------------ consensus_11410#1 ------------------------------------------------------------ consensus_11410#0 CAATATTGTCCACTCATGGCTTCGATTGGCTGCTTTATTTCCTTTACATTTTGTATGTGC 240 consensus_11410#2 ------------------------------------------------------------ consensus_11410#1 ------------------------------------------------------------ consensus_11410#0 CTGTCCTAAGGGCTTCGAGCCAGATGCAAAGACTGTGGAGATAGCCAGGAGTGCTGGTAG 300 consensus_11410#2 ------------------------------------------------------------ consensus_11410#1 ------------------------------------------------------------ consensus_11410#0 TAAGATTGAAATAACAGATGACCCTATGGAAGCAGTTAAGGGAGCAGATGTTGTGTATAC 360 consensus_11410#2 ------------------------------------------------------------ consensus_11410#1 ------------------------------------------------------------ consensus_11410#0 AGATTTCTGGGCCAGCATGGGCCCAAAGGAGGAAGCTGAATATAGAAAAAAAGTATTCCA 420 consensus_11410#2 ------------------------------------------------------------ consensus_11410#1 ------------------------------------------------------------ consensus_11410#0 AGGATTCACGGTGGATGAAGCTATGATGGAGATGGCTGGGCCAAATGCCTTCCTTATGCA 480 consensus_11410#2 ------------------------------------------------------------ consensus_11410#1 ------------------------------------------------------------ consensus_11410#0 TTGTTTGCCTGCAGAGAGAGGGATAGAGGTAACAGACGGCGCCATTGAAGCTCCCAACTC 540 consensus_11410#2 ------------------------------------------------------------ consensus_11410#1 ------------------------------------------------------------ consensus_11410#0 AATCGTATTCCCCCAGGCTGAGAACAGAA-TGCA-CGCCCAGAA-TGCT-ATCATG-CTT 595 consensus_11410#2 -----------------------ACAGAA-TGCAACGCCCAGAA-TGCTGATCATGGCTT 35 consensus_11410#1 ------------AGGGCTGAGANACAGAAGTGCAGCGCCCAGAAGTGCT-ATCATGCTTC 47 ****** **** ********* **** ****** * consensus_11410#0 CACGT-CCTTGGTG-CTTAGACCT-ACAGT-CGTGTACCAGTTAAATGAATATTGATATC 651 consensus_11410#2 CACGTGCCTTGGTGGCTTAGACCTGACAGTGCGTGTACCAGTTAAATGAATATTGATATC 95 consensus_11410#1 AGCGT-CCTTGGTG-CTTAGACCT-ACACGTCGTGTACCAGTTAAATGAATATTGATATC 104 *** ******** ********* *** ***************************** consensus_11410#0 TGAA-TGGCGAT-ATCATTTCGGTTTTCGCAGTTTCTCCCTGGGGGCAGGAGGGGTAGAG 709 consensus_11410#2 TGAACTGGCCACCATCATTTCGGTTTTC-CAGTTTCTCCCTGGGG-CAGGAGGGTTAGAG 153 consensus_11410#1 TGAA-TGGCGAT-ATCATNCCCGGTTTTCCAGTTTCTCCCTGGGGCACGGAGGGTTAGAG 162 **** **** * ***** * * *** **************** ****** ***** consensus_11410#0 ATTTTGGAGAAGTTCACTATGTTCAGATGCTTTGGATTGTCTGATAATACTATTTTGTAC 769 consensus_11410#2 ATTTTGGAGAAGTTCACTATGTTCAGATGCTTTGGATNGTCTGATAATACTATTNTGTAC 213 consensus_11410#1 ATTTTGGAGAAGTTCACTATGTTCAGATGCTTTGGATT-TCTGATAATACTATTTTGTAC 221 ************************************* *************** ***** consensus_11410#0 TTTTCGTGGTAGCTGCTTGTACTGTACCAGGTCGGTAAATCCTGAATAAATGGCGCACCT 829 consensus_11410#2 TTTTC-TGGTACCTGCTTGTACTGTACCAGGTCGGTANCTCCTGAATAAAGGNCGCACCT 272 consensus_11410#1 TTTTCGTGNTA-CTGCTTCTACTNTACCAGTTCG-TAAATCCTGAATANATGGC-CACCT 278 ***** ** ** ****** **** ****** *** ** ********* * * * ***** consensus_11410#0 TTATAATCCAAAAAAAAAACACCCCCCAAAAAAAAA 865 consensus_11410#2 TTATAAAA---------------------------- 280 consensus_11410#1 TTATAATCCAAAAAA--------------------- 293 ****** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||