cluster # 11412

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Oryza sativa
cluster # 11412 cluster # 11412 Sequences # 9 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11412#0 length = 518 sequences # 4
consensus_11412#1 length = 449 sequences # 2

consensus_11412#2 length = 446 sequences # 1
consensus_11412#3 length = 288 sequences # 1
consensus_11412#4 length = 287 sequences # 1

consensusID : consensus_11412#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 518
fasta sequence

                              [ATTCTGCAGTCCCCATCCTGGGAATTCGCTGATGCGCAGTTATCCCATATCCAGATGAAGAAGCTGGGGAACTACCAATGGCTTTCATAGTAAGGCAACCAGGTTC-AAATATTACCAAGGAACAAGTCATGGATTAT-GTCGC-AAACAGGTTGCGCCATACAAG-AAGGTG--CGACGAG-TGG-CTTTT-GTCACTGC-AATA-CC-AAAATCGCCTG-CAGGGAAGATCCTTCGGCGGGAGCTTGAGCAGCAGGCCCTGTCGATGGGTGCCTCCAAGCTTTGAAATGTGTAATTTGCTGCAGTAGTCTA-GTAGAGAATATTTTGCTTACATATAGTGAACTGGAGATTTATATGCCTCAAGCTTTA-CC-ATTAACACCTCCTTTGGAGGCTGAGAAATTTTGGGGGGAATTTTGGAGGACTACGAAAATTATGTAAATTCCCATGTTCCAGAGCCAGTATATTTTAGCTCAACAACTCGGCCTCCAAATGTCCAATCATAAAAAAATGTCTACACCGTAAAAAAAAAA]

[+] EMBL BM420248             [ATTCTGCAGTCCCCATCCTGGGAATTCGCTGATGCGCAGTTATCCCATATCCAGATGAAGAAGCTGGGGAACTACCAATGGCTTTCATAGTAAGGCAACCAGGTTC AAATATTACCAAGGAACAAGTCATGGATTAT GTCGC AAACAGGTTGCGCCATACAAG AAGGTG  CGACGAG TGG CTTTT GTCACTGC AATA CC AAAATCGCCTG CAGGGAAGATCCTTCGGCGGGAGCTTGAGCAGCAGGCCCTGTCGATGGGTGCCTCCAAGCTTTGAAATGTGTAATTTGCTGCAGTAGTCTA GTAGAGAATATTTTGCTTACATATAGTGAACTGGAGATTTATATGCCTCAAGCTTTA CC ATTAACACCTCCTTTGGAGGCTGAGAAATTTTGGGGGGAATTTTGGAGGACTACGAAAATTATGTAAATTCCCATGTTCCAGAGCCAGTATATTTTAGCTCAACAACTCGGCCTCCAAATGTCCAATCATAAAAA                        ]
[+] EMBL AU223114             [                                                              GCTGGGGAACTACCAATGGCTTTCATAGTAAGGCAACCAGGTTC AAATATTACCAAGGAACAAGTCATGGATTAT GTCGCAAAACAGGTTGCGCCATACAAG AAGGTG  CGACGAG TGG CTTTT GTCACTGC AATA CC AAAATCGCCTG CAGGGAAGATCCTTCGGCGGGAGCTTGTGCAGCAGGCCCTGTCGATGGGTGCCTCCAAGCTTTGAAATGTGTAATTTGCTGCAGTAGTCTA GTAGAGAATATTTTGCTTACATATAGTGAACTGGAGATTTATAGGCCTCAAGCTTTA CCAATTAACACCTCCTTTGGAGGCTGAGAAATTTTGGGGGGAATTTTGGAGGACTACGAAAATTATGTAAATTCCCATGTTCCAGAGCTAGTATATTTTAGCTCAACAACACGGCCTCCAAATGTCCAATCATAAAAAAA                      ]
[+] EMBL BI813803             [                                                                                               CAACCAGGTTCAAAATATTACCAAGGAACAAGTCATGGATTATGGTCGC AAACAGGTTGCGCCATACAAG AAGGTG  CGACGAG TGG CTTTT GTCACTGC AATACCC AAAATCGCCTGCCAGGGAAGATCCTTCGGCGGGAGCTTGAGCA CAGGCCCTGTCGATGGGTGCCTCCAAGCTTTGAAATGTGTAATTTGCT CAGTAGTCTA GTAGAGAATATTTTGCTTACATATAGTGAACTGGAGATTTATATGCCTCAAGCTTTACCC ATTAACACCTCCTTTGGAGGCTGAGAAATTTTGGGGGGAATTTTGGAGGACTACGAAAATTATGTAAATTCCCATGTTCCAGAGCCAGTATATTTTAGCTCAACAACTCGGCCTCCAAATGTCCAATCATATTTCCATGTCTACACCGTAAAAAAAAAA]
[+] EMBL AU108438             [                                                                                                                                                      tgcnngcCCATACAAGAAAGGTGTCCGACGAGTTGGCCTTTTGGTCACTGCAAATA CCAAAAATCGCCTGTCAGGGAAGAT CTTCGGCGGGAGCTTGTGCAGCAGGCCCTGTCGATGGGTGCCTCCAAGCTTTGAAATGTGTAATTTGCTGCAGTAGTCTANGTAGAGAATATTTTGCTTACATATAGTGAACTGGAGATTTATAGGCCTCAAGCTTTA CCAATTAACA CTCCTTTGGAGGCTGAGAAATTTTGGGGGGAATTTTGGAGGACTACGAAAATTATGTAAATTCCCATGTTCCAGAGCTAGTATATTTTAGCTCAACAACACGGCCTCCAAATGTCCAATCATAAAAA                        ]




>consensus_11412#0
ATTCTGCAGTCCCCATCCTGGGAATTCGCTGATGCGCAGTTATCCCATATCCAGATGAAG
AAGCTGGGGAACTACCAATGGCTTTCATAGTAAGGCAACCAGGTTCAAATATTACCAAGG
AACAAGTCATGGATTATGTCGCAAACAGGTTGCGCCATACAAGAAGGTGCGACGAGTGGC
TTTTGTCACTGCAATACCAAAATCGCCTGCAGGGAAGATCCTTCGGCGGGAGCTTGAGCA
GCAGGCCCTGTCGATGGGTGCCTCCAAGCTTTGAAATGTGTAATTTGCTGCAGTAGTCTA
GTAGAGAATATTTTGCTTACATATAGTGAACTGGAGATTTATATGCCTCAAGCTTTACCA
TTAACACCTCCTTTGGAGGCTGAGAAATTTTGGGGGGAATTTTGGAGGACTACGAAAATT
ATGTAAATTCCCATGTTCCAGAGCCAGTATATTTTAGCTCAACAACTCGGCCTCCAAATG
TCCAATCATAAAAAAATGTCTACACCGTAAAAAAAAAA

consensusID : consensus_11412#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 449
fasta sequence

                              [GATGCGGCAGTTATCCCATATCCAGATGAAGAAGCTGGGGAACTACCAATGGCTTTCATAGTAAGGCAACCAGGTTCAAATATTACCAAGGAACAAGTCATGGATTATGTCGCAAAACAGGTTGCGCCATACAAGAAGGTGCGACGAGTGGCTTTTGTCACTGCAATACCAAAATCGCCTGCAGGGAAGATCCTTCGGCGGGAGCTTGTGCAGCAGGCCCTGTCGATGGGTGCCTCCAAGCTTTGAAATGTGTAATTTGCTGCAGTAGTCTAGTAGAGAATATTTTGCTTACATATAGTGAACTGGAGATTTATAGGCCTCAAGCTTTACCAATTAACNCCTCCTTTGGAGGCTGAGAAATTTTGGGGGGAATTTTGGAGGACTACGAAAATTATGTAAATTCCCATGTTCCAGAGCTAGTATATTTTAGCTCAAAAAAAAAAAAAAAA]

[+] EMBL AU173984             [GATGCGGCAGTTATCCCATATCCAGATGAAGAAGCTGGGGAACTACCAATGGCTTTCATAGTAAGGCAACCAGGTTCAAATATTACCAAGGAACAAGTCATGGATTATGTCGCAAAACAGGTTGCGCCATACAAGAAGGTGCGACGAGTGGCTTTTGTCACTGCAATACCAAAATCGCCTGCAGGGAAGATCCTTCGGCGGGAGCTTGTGCAGCAGGCCCTGTCGATGGGTGCCTCCAAGCTTTGAAATGTGTAATTTGCTGCAGTAGTCTAGTAGAGAATATTTTGCTTACATATAGTGAACTGGAGATTTATAGGCCTCAAGCTTTACCAATTAACNCCTCCTTTGGAGGCTGAGAAATTTTGGGGGGAATTTTGGAGGACTACGAAAATTATGTAAATTCCCATGTTCCAGAGCTAGTATATTTTAGCTCAAAAAAAAAAAAAAAA]
[+] EMBL AU197839             [                                  CTGGGGACCNACCAATGGCTTTCATAGTAAGGCAACCAGGTTCCAATATNCCCAAGGAACAAGTCATGGATTATGTCNCAAAACAGGTTGCGCCATACAAGAAGGTGCGACGAGTGGCTTTTGTCNCTGCAATACCAAAATCGCCTGCAGGGAAGATCCTTCGGCGGGAGCTTGTGCAGCAGGCCCTGTCGATGGGTGCCNCCAAGCTTTGAAATGTGTAATTTGCNGCAGTAGTCTAGTAGAGAATATTTTGCTTACATATAGTGAACTGGAGATTTATAGGCCTCAAGCTTTACCAATTAACACCTCCTTTGGAGGCTGAGAAATTTTGGGGGGAATTTTGGAGGACTACGAAAATTATGTAAATTCCCATGTTCCAGAGCTAGTATATTTTAGCTCAAAAAAAAAAAAAAAA]




>consensus_11412#1
GATGCGGCAGTTATCCCATATCCAGATGAAGAAGCTGGGGAACTACCAATGGCTTTCATA
GTAAGGCAACCAGGTTCAAATATTACCAAGGAACAAGTCATGGATTATGTCGCAAAACAG
GTTGCGCCATACAAGAAGGTGCGACGAGTGGCTTTTGTCACTGCAATACCAAAATCGCCT
GCAGGGAAGATCCTTCGGCGGGAGCTTGTGCAGCAGGCCCTGTCGATGGGTGCCTCCAAG
CTTTGAAATGTGTAATTTGCTGCAGTAGTCTAGTAGAGAATATTTTGCTTACATATAGTG
AACTGGAGATTTATAGGCCTCAAGCTTTACCAATTAACNCCTCCTTTGGAGGCTGAGAAA
TTTTGGGGGGAATTTTGGAGGACTACGAAAATTATGTAAATTCCCATGTTCCAGAGCTAG
TATATTTTAGCTCAAAAAAAAAAAAAAAA

consensusID : consensus_11412#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 446
fasta sequence

                              [AGATGAAGAAGCTGGGGAACTACCAATGGCTTTCATAGTAAGGCAACCAGGTTCAAATATTACCAAGGAACAAGTCATGGATTATGTCGCAAAACAGGTTGCGCCATACAAGAAGGTGCGACGAGTGGCTTTTGTCACTGCAATACCAAAATCGCCTGCAGGGAAGATCAGATGATTTTCTCTTTCCTCGAAGAACCAGCAATCACCACCTCCAACAAGGCCGACTGCTTCTGATCGGAAGCTGGTATAGTAGAGAATATTTTGCTTACATATAGTGAACTGGAGATTTATAGGCCTCAAGCTTTACCAATTAACACCTCCTTTGGAGGCTGAGAAATTTTGGGGGGAATTTTGGAGGACTACGAAAATTATGTAAATTCCCATGTTCCAGAGCTAGTATATTTTAGCTCAACAACACGGCCTCCAAATGTCCAATCATAAAAAAA]

[+] EMBL AU223163             [AGATGAAGAAGCTGGGGAACTACCAATGGCTTTCATAGTAAGGCAACCAGGTTCAAATATTACCAAGGAACAAGTCATGGATTATGTCGCAAAACAGGTTGCGCCATACAAGAAGGTGCGACGAGTGGCTTTTGTCACTGCAATACCAAAATCGCCTGCAGGGAAGATCAGATGATTTTCTCTTTCCTCGAAGAACCAGCAATCACCACCTCCAACAAGGCCGACTGCTTCTGATCGGAAGCTGGTATAGTAGAGAATATTTTGCTTACATATAGTGAACTGGAGATTTATAGGCCTCAAGCTTTACCAATTAACACCTCCTTTGGAGGCTGAGAAATTTTGGGGGGAATTTTGGAGGACTACGAAAATTATGTAAATTCCCATGTTCCAGAGCTAGTATATTTTAGCTCAACAACACGGCCTCCAAATGTCCAATCATAAAAAAA]




>consensus_11412#2
AGATGAAGAAGCTGGGGAACTACCAATGGCTTTCATAGTAAGGCAACCAGGTTCAAATAT
TACCAAGGAACAAGTCATGGATTATGTCGCAAAACAGGTTGCGCCATACAAGAAGGTGCG
ACGAGTGGCTTTTGTCACTGCAATACCAAAATCGCCTGCAGGGAAGATCAGATGATTTTC
TCTTTCCTCGAAGAACCAGCAATCACCACCTCCAACAAGGCCGACTGCTTCTGATCGGAA
GCTGGTATAGTAGAGAATATTTTGCTTACATATAGTGAACTGGAGATTTATAGGCCTCAA
GCTTTACCAATTAACACCTCCTTTGGAGGCTGAGAAATTTTGGGGGGAATTTTGGAGGAC
TACGAAAATTATGTAAATTCCCATGTTCCAGAGCTAGTATATTTTAGCTCAACAACACGG
CCTCCAAATGTCCAATCATAAAAAAA

consensusID : consensus_11412#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 288
fasta sequence

                              [NGTTGCCAAGCCAAGGCCCTTGTCCGATTGGGTGCCTTCCAAAGCCTTTTGNAAATTGTGTNAAATTTTGGCTTGCCAGTTAGNTCTAGTTAAGAAGAAATTATTTTTGCTTACATATAGTGAACTGGAGATTTATAGGCCTCAAGCTTTACCAATTAACACTCCTTTGGAGGCTGAGAAATTTTGGGGGGAATTTTGGAGGACTACGAAAATTATGTAAATTCCCATGTTCCAGAGCTAGTATATTTTAGCTCAACAACACGGCCTCCAAATGTCCAATCATAAAAA]

[+] EMBL AU108451             [NGTTGCCAAGCCAAGGCCCTTGTCCGATTGGGTGCCTTCCAAAGCCTTTTGNAAATTGTGTNAAATTTTGGCTTGCCAGTTAGNTCTAGTTAAGAAGAAATTATTTTTGCTTACATATAGTGAACTGGAGATTTATAGGCCTCAAGCTTTACCAATTAACACTCCTTTGGAGGCTGAGAAATTTTGGGGGGAATTTTGGAGGACTACGAAAATTATGTAAATTCCCATGTTCCAGAGCTAGTATATTTTAGCTCAACAACACGGCCTCCAAATGTCCAATCATAAAAA]




>consensus_11412#3
NGTTGCCAAGCCAAGGCCCTTGTCCGATTGGGTGCCTTCCAAAGCCTTTTGNAAATTGTG
TNAAATTTTGGCTTGCCAGTTAGNTCTAGTTAAGAAGAAATTATTTTTGCTTACATATAG
TGAACTGGAGATTTATAGGCCTCAAGCTTTACCAATTAACACTCCTTTGGAGGCTGAGAA
ATTTTGGGGGGAATTTTGGAGGACTACGAAAATTATGTAAATTCCCATGTTCCAGAGCTA
GTATATTTTAGCTCAACAACACGGCCTCCAAATGTCCAATCATAAAAA

consensusID : consensus_11412#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 287
fasta sequence

                              [CAGTTGTCTTCCTTCGGCGGGAGCTTGTGCAGCAGGCCCTGTCGATGGGTGCCTCCAAGCTTTGAAATGTGTAATTTGCTGCAGTAGTCTAGTAGAGAATATTTTGCTTACATATAGTGAACTGGAGATTTATAGGCCTCAAGCTTTACCAATGNANGTTTGNTTTTGTTTNTCCTAGNTACAATCTTTCCAGGGNTGNGANATTGTTTTTTTTTTNTGCTATCAAANATAAACTCCGGNNCTGTTTAAAAAAAAAAAACCNAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU174314             [CAGTTGTCTTCCTTCGGCGGGAGCTTGTGCAGCAGGCCCTGTCGATGGGTGCCTCCAAGCTTTGAAATGTGTAATTTGCTGCAGTAGTCTAGTAGAGAATATTTTGCTTACATATAGTGAACTGGAGATTTATAGGCCTCAAGCTTTACCAATGNANGTTTGNTTTTGTTTNTCCTAGNTACAATCTTTCCAGGGNTGNGANATTGTTTTTTTTTTNTGCTATCAAANATAAACTCCGGNNCTGTTTAAAAAAAAAAAACCNAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_11412#4
CAGTTGTCTTCCTTCGGCGGGAGCTTGTGCAGCAGGCCCTGTCGATGGGTGCCTCCAAGC
TTTGAAATGTGTAATTTGCTGCAGTAGTCTAGTAGAGAATATTTTGCTTACATATAGTGA
ACTGGAGATTTATAGGCCTCAAGCTTTACCAATGNANGTTTGNTTTTGTTTNTCCTAGNT
ACAATCTTTCCAGGGNTGNGANATTGTTTTTTTTTTNTGCTATCAAANATAAACTCCGGN
NCTGTTTAAAAAAAAAAAACCNAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11412#0      ATTCTGCAGTCCCCATCCTGGGAATTCGCTGATGCGCAGTTATCCCATATCCAGATGAAG 60
consensus_11412#2      ----------------------------------------------------AGATGAAG 8
consensus_11412#3      ------------------------------------------------------------
consensus_11412#1      -----------------------------GATGCGGCAGTTATCCCATATCCAGATGAAG 31
consensus_11412#4      ------------------------------------------------------------
                                                                                   

consensus_11412#0      AAGCTGGGGAACTACCAATGGCTTTCATAGTAAGGCAACCAGGTTCAAATATTACCAAGG 120
consensus_11412#2      AAGCTGGGGAACTACCAATGGCTTTCATAGTAAGGCAACCAGGTTCAAATATTACCAAGG 68
consensus_11412#3      ------------------------------------------------------------
consensus_11412#1      AAGCTGGGGAACTACCAATGGCTTTCATAGTAAGGCAACCAGGTTCAAATATTACCAAGG 91
consensus_11412#4      ------------------------------------------------------------
                                                                                   

consensus_11412#0      AACAAGTCATGGATTATGTCGCAAA-CAGGTTGCGCCATACAAGAAGGTGCGACGAGTGG 179
consensus_11412#2      AACAAGTCATGGATTATGTCGCAAAACAGGTTGCGCCATACAAGAAGGTGCGACGAGTGG 128
consensus_11412#3      ------------------------------------------------------------
consensus_11412#1      AACAAGTCATGGATTATGTCGCAAAACAGGTTGCGCCATACAAGAAGGTGCGACGAGTGG 151
consensus_11412#4      ------------------------------------------------------------
                                                                                   

consensus_11412#0      CTTTTGTCACTGCAATACCAAAATCGCCTGCAGGGAAGATCCTTCGGCGGGAGCTTGAGC 239
consensus_11412#2      CTTTTGTCACTGCAATACCAAAATCGCCTGCAGGGAAGATCAGATGATTTTCTCTTTCCT 188
consensus_11412#3      ---------------------NGTTGCCA--AGCCAAGGCCCTTGTCCGATTGGGTGCCT 37
consensus_11412#1      CTTTTGTCACTGCAATACCAAAATCGCCTGCAGGGAAGATCCTTCGGCGGGAGCTTGTGC 211
consensus_11412#4      ------------------------------CAGTTGTCTTCCTTCGGCGGGAGCTTGTGC 30
                                                      **       *              *    

consensus_11412#0      AGCAGGCCCTGTCGATGGGTGCCTCCAA---GCTTTGAAATGTGTAATTTGCTGCAGTAG 296
consensus_11412#2      CGAAGAACCAG-CAATCACCACCTCCAACAAGGCCGACTGCTTCTGATCGGAAGC--TGG 245
consensus_11412#3      TCCAAAGCCTTTTGNAAATTGTGTNAAA------TTTTGGCTTGCCAGTTAGNTC--TAG 89
consensus_11412#1      AGCAGGCCCTGTCGATGGGTGCCTCCAA---GCTTTGAAATGTGTAATTTGCTGCAGTAG 268
consensus_11412#4      AGCAGGCCCTGTCGATGGGTGCCTCCAA---GCTTTGAAATGTGTAATTTGCTGCAGTAG 87
                          *   **              *  **              *   *       *  * *

consensus_11412#0      TCTAGTAGAGAATATTTT-GCTTACATATAGTGAACTGGAGATTTATATGCCTCAAGCTT 355
consensus_11412#2      TATAGTAGAGAATATTTT-GCTTACATATAGTGAACTGGAGATTTATAGGCCTCAAGCTT 304
consensus_11412#3      TTAAGAAGAAATTATTTTTGCTTACATATAGTGAACTGGAGATTTATAGGCCTCAAGCTT 149
consensus_11412#1      TCTAGTAGAGAATATTTT-GCTTACATATAGTGAACTGGAGATTTATAGGCCTCAAGCTT 327
consensus_11412#4      TCTAGTAGAGAATATTTT-GCTTACATATAGTGAACTGGAGATTTATAGGCCTCAAGCTT 146
                       *  ** *** * ****** ***************************** ***********

consensus_11412#0      TACCA-TTAACACCTCCTTTGGAGGCTGAGAAATTTTGGGGGGAATTTTGGAGGACTACG 414
consensus_11412#2      TACCAATTAACACCTCCTTTGGAGGCTGAGAAATTTTGGGGGGAATTTTGGAGGACTACG 364
consensus_11412#3      TACCAATTAACAC-TCCTTTGGAGGCTGAGAAATTTTGGGGGGAATTTTGGAGGACTACG 208
consensus_11412#1      TACCAATTAACNCCTCCTTTGGAGGCTGAGAAATTTTGGGGGGAATTTTGGAGGACTACG 387
consensus_11412#4      TACCAATGNANGTTTGNTTTTGTTTNT------CCTAGNTACAATCTTTCCAGGGNTGNG 200
                       ***** *  *    *  *** *    *        * *     *  ***  ***  *  *

consensus_11412#0      AAAATTATGTAAATTCCCATGTTCCAGAGCCAG-TATATTTTAGCTCAACAACTCGGCCT 473
consensus_11412#2      AAAATTATGTAAATTCCCATGTTCCAGAGCTAG-TATATTTTAGCTCAACAACACGGCCT 423
consensus_11412#3      AAAATTATGTAAATTCCCATGTTCCAGAGCTAG-TATATTTTAGCTCAACAACACGGCCT 267
consensus_11412#1      AAAATTATGTAAATTCCCATGTTCCAGAGCTAG-TATATTTTAGCTCAAAAAAAAAAAAA 446
consensus_11412#4      ANATTGTTTTTTTTTTNTGCTATCAAANATAAACTCCGGNNCTGTTTAAAAAAAAAAAAC 260
                       * * *  * *   **       ** *     *  *        * * ** **        

consensus_11412#0      CCAAATGTCCAATCATAAAAAAATGTCTACACCGTAAAAAAAAAA 518
consensus_11412#2      CCAAATGTCCAATCATAAAAAAA---------------------- 446
consensus_11412#3      CCAAATGTCCAATCATAAAAA------------------------ 288
consensus_11412#1      AAA------------------------------------------ 449
consensus_11412#4      CNAAAAAAAAAAAAAAAAAAAAAAAAA------------------ 287
                         *