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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11415#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 871 fasta sequence
[GCCCGCCAACCCAGTCTTGGACCGAGCTGAGCCGCCATGGCGACGACGCGGCCGGCGCGCAGCGACCCGCACCTGCCGCCGGAGGAGGCGGCGCGGGTGGAGGCCGAGGTGCGGGGCTACTTCGACAGCATGGCCCCCAGGCGCCCTTCCAAGCCGCCGCGGAGCGACCCGTCGGACGCCGGGGAGGGTGGGGCGGAGGCCGACGCCGACGCCGACCTGCCGGAGCTTCGGAGGCTCCGCGACCTCGAGGCCAAACCCCAGAAGTTGGTGCTGGACGGTGGGGATGTGAACGGGGAGGAGTATGTGGAGACGCAATACTACAACGGGCTCAATTGCATCGACAAGCAACACCACACGACTGGTACAGGGTTTATCAAAGTGGAAAGACCCAATGGTAGCTCCTTCAACGTGACAACCGTTGCCTACTCATCTGACAGCATTATCCGCTGCATGAGCAACCCTGCAACAAATGATTGGATACCATCCTCAGAGACGGTTATTCCAGTTTCAAACAAGCCTAGCAGGAGTGACTCCTGAGTCCTGACCGGGTTCCCTTCTGCTGTATGAATCTTTTTATAAATCATCTGAAGAGAATAAAGAGCACATAGAGCAGCCACTTCTGTATATCGGAGGAACTCAGAGAAAGGTAGAGAAATGAAAGCGCTGCAACTGCAAGGTTTATAAGGCATGAATCTGTCCTGCTCTTAATCGTGTTTTATGTGAACTTGTCGTATGCAACTTCACTGTTCATACTCAAAACTCAGTATCATGAATGATTGGTGTAACCGTGTAAGTGGATAGAGTACCAGTTCTGTCAGTTTTTTCTCTTTGCTGTAAGGATATTTTCCGTGTGTCTATGGAAAATGGGTCA]
[+] EMBL AK108341 [GCCCGCCAACCCAGTCTTGGACCGAGCTGAGCCGCCATGGCGACGACGCGGCCGGCGCGCAGCGACCCGCACCTGCCGCCGGAGGAGGCGGCGCGGGTGGAGGCCGAGGTGCGGGGCTACTTCGACAGCATGGCCCCCAGGCGCCCTTCCAAGCCGCCGCGGAGCGACCCGTCGGACGCCGGGGAGGGTGGGGCGGAGGCCGACGCCGACGCCGACCTGCCGGAGCTTCGGAGGCTCCGCGACCTCGAGGCCAAACCCCAGAAGTTGGTGCTGGACGGTGGGGATGTGAACGGGGAGGAGTATGTGGAGACGCAATACTACAACGGGCTCAATTGCATCGACAAGCAACACCACACGACTGGTACAGGGTTTATCAAAGTGGAAAGACCCAATGGTAGCTCCTTCAACGTGACAACCGTTGCCTACTCATCTGACAGCATTATCCGCTGCATGAGCAACCCTGCAACAAATGATTGGATACCATCCTCAGAGACGGTTATTCCAGTTTCAAACAAGCCTAGCAGGAGTGACTCCTGAGTCCTGACCGGGTTCCCTTCTGCTGTATGAATCTTTTTATAAATCATCTGAAGAGAATAAAGAGCACATAGAGCAGCCACTTCTGTATATCGGAGGAACTCAGAGAAAGGTAGAGAAATGAAAGCGCTGCAACTGCAAGGTTTATAAGGCATGAATCTGTCCTGCTCTTCATCGTGTTTTATGTGAACTTGTCGTATGCAACTTCACTGTTCATACTCAAAACTCAGTATCATGAATGATTGGTGTAACCGTGTAAGTGGATAGAGTACCAGTTCTGTCAGTTTTTTCTCTTTGCTGTAAGGATATTTTCCGTGTGTCTATGGAAAATGGGTC ]
[+] EMBL CA998115 [ ACCTGCCGGAGCTTCGGAGGCTCCGCGACCTCGAGGCCAAACCCCAGAAGTTGGTGCTGGACGGTGGGGATGTGAACGGGGAGGAGTATGTGGAGACGCAATACTACAACGGGCTCAATTGCATCGACAAGCAACACCACACGACTGGTACAGGGTTTATCAAAGTGGAAAGACCCAATGGTAGCTCCTTCAACGTGACAACCGTTGCCTACTCATCTGACAGCATTATCCGCTGCATGAGCAACCCT ]
[+] EMBL OSC20261 [ cgTCAAAGTGGAAAGACCCAATGGTAGCTCCTTCAACGTGACAACCGTTGCCTACTCATCTGACAGCATTATCCGCTGCATGAGCAACCCTGCAACAAATGATTGGATACCATCCTCAGAGACGGTTATTCCAGTTTCAAACAAGCCTAGCAGGAGTGACTCCTGAGTCCTGACCGGGTTCCCTTCTGCTGTATGAATCTTTTTATAAATCATCTGAAGAGAATAAAGAGCACATAGAGCAGCCACTTCTGTATATCGGNGGAACTCAGAGAAAGGTAGAGAAATGAAAGCGCTGCAACTGC ]
[-] EMBL BI305492 [ GAAAGACCCAATGATAGCTCCTTCAACGTGACAACCGTTGCCTACTCATCTGACAGCATTGTCCGCTGCACGAGCAACCCTGCAACAAATGATTGGATACCATCCTCAGAGACGGTTATTCCAGTTTCAAACAAGCCTAGCAGGAGTGACTCCTGAGTCCTGACCGGGTTCCCTTCTGCTGTATGAATCTTTTTATAAATCATCTGAAGAGAATAAAGAGCACATAGAGCAGCCACTTTTGTATATCGGAGGAACTCAGAGAAAGGTAGAGAAATGAAAGCGCTGCAACTGCAAGGTTTATAAGGCATGAATCTGTCCTGCTCTTAATCGTGTTTTATGTGAACTTGTCGTATGCAACTTCACTGTTCATACTCAAAACTCAGTATCATGAATGATTGGTGTAACCGTGTAAGTGGATAGAGTACCAGTTCTGTCAGTTTTTTTTTTTTGCTGTAAGGATATTTTCCGTGTGTCTATGGAAAATGGGTCA]
[-] EMBL CB966846 [ cATGATAGCTCCTTCAACGTGACAACCGTTGCCTACTCATCTGACAGCATTGTCCGCTGCACGAGCAACCCTGCAACAAATGATTGGATACCATCCTCAGAGACGGTTATTCCAGTTTCAAACAAGCCTAGCAGGAGTGACTCCTGAGTCCTGACCGGGTTCCCTTCTGCTGTATGAATCTTTTTATAAATCATCTGAAGAGAATAAAGAGCACATAGAGCAGCCACTTCTGTATATCGGAGGAACTCAGAGAAAGGTAGAGAAATGAAAGCGCTGCAACTGCAAGGTTTATAAGGCATGAATCTGTCCTGCTCTTAATCGTGTTTTATGTGAACTTGTCGTATGCAACTTCACTGTTCATACTCAAAACTCAGTATCATGAATGATTGGTGTAACCGTGTAAGTGGATAGAGTACCAGTTCTGTCAGTTTTTTCTCTTTGCTGTAAGGATATTTTCCGTGTGTCTATGGAAAATGGGTCA]
consensusID : consensus_11415#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 674 fasta sequence
[GGCTCCGCGACCTCGAGGCCAAACCCCAGAAGTTGGTGCTGGACGGTGGGGATGTGAACGGGGAGGAGTATGTGGAGACGCAATACTACAACGGGCTCAATTGCATCGACAAGCAACACCACACGACTGGTACAGGGTTTATCAAAGTGGAAAGACCCAATGGTAGCTCCTTCAACGTGACAACCGTTGCCTACTCATCTGACAGCATTATCCGCTGCATGAGCAACCCTGCAACAAATGATTGGATACCATCCTCAGAGACGGTATG-GCAGTAAAAATGTTATTCCAGTTTCAAACA-AGCCTAGCAGGAGTGACTCCTGAGTCCTGACCGGGTTCCCTTCTGCTGTATGAATCTTTTTATAAATCATCTGAAGAGAATAAAGAGCACATAGAGCAGCCACTTCTGTATATCGGAGGAACTCAGAGAAAGGTAGAGAAATGAAAGCGCTGCAACTGCAAGGTTTATAAGGCATGAATCTGTCCTGCTCTTCATCGTGTTTTATGTGAACTTGTCGTATGCAACTTCA-CTG-TTCATACTCCAAACTCAGTATCATGAATGATTGGTGTAACCGTGTAAGTGGATAGAGTACCAGTTCTGTCAGTTTTTTCTCTTTGCTGTAAGGATATTTTCCGTGTGTCTATGGAAAATGGGTCATTGCCAGATAAAAAAAAAA]
[+] EMBL CA998929 [GGCTCCGCGACCTCGAGGCCAAACCCCAGAAGTTGGTGCTGGACGGTGGGGATGTGAACGGGGAGGAGTATGTGGAGACGCAATACTACAACGGGCTCAATTGCATCGACAAGCAACACCACACGACTGGTACAGGGTTTATCAAAGTGGAAAGACCCAATGGTAGCTCCTTCAACGTGACAACCGTTGCCTACTCATCTGACAGCATTATCCGCTGCATGAGCAACCCTGCAACAAATGATTGGATACCATCCTCAGAGACGGTATG GCAGTAAAAATGTTATTCCAGTTTCAAACA AGCCTAGCAGGAGTGACTCCTGAGTCCTGACCGGGTTCCCTTCTGCTGTATGAATCTTTTTATAAATCATCTGAAGAGAATAAAGAGCACATAGAGCAGCCACTTCTGTATATCGGAGGAACTCAGAGAAAGGTAGAGAAATGAAAGCGCTGCAACTGCAAGGTTTATAAGGCATGAATCTGTCCTGCTCTTCATCGTGTTTTATGTGAACTTGTCGTATGCAACTTCA CTG TTCATACTCAAAACTCAGTATCATGAATGATTGGTGTAACCGTGTAAGTGGATAGAGTACCAGTTCTGTCAGTTTTTTCTCTTTGCTGTAAGGATATTTTCCGTGT ]
[+] EMBL BI804964 [ CAACCCTGCAACAAATGATTGGATACCATCCTCAGAGACGGTATGCCCAGTAAAAATGTTATTCCAGTTTCAAACACAGCCTAGCAGGAGTGACTCCTGAGTCCTGACCGGGTTCCCTTCTGCTGTATGAATCTTTTTATAAATCATCTGAAGAGAATAAAGAGCACATAGAGCAGCCACTTCTGTATATCGGAGGAACTCAGAGAAAGGTAGAGAAATGAAAGCGCTGCAACTGCAAGGTTTATAAGGCATGAATCTGTCCTGCTCTTCATCGTGTTTTATGTGAACTTGTCGTATGCAACTTCA CTG TTCATACTCCAAACTCAGTATCATGAATGATTGGTGTAACCGTGTAAGTGGATAGAGTACCAGTTCTGTCAGTTTTTTCTCTTTGCTGTAAGGATATTTTCCGTGTGTCTATGGAAAATGGGTCATTGCCAGATAAAAAAAAAA]
[+] EMBL BI804871 [ AGGAGTGACTCCTGAGTCCTGACCGGGTTCCCTTCTGCTGTATGAATCTTTTTATAAATCATCTGAAGAGAATAAAGAGCACATAGA CA CCACTTCTGTATATCGGAGGAACTCAGAGAAAGGTAGAGAAATGAAAGCGCTGCAACTGCAAGGTTTATAAGGCATGAATCTGTCCTGCTCTTCATCGTGTTTTATGTGAACTTGTCGTATGCAACTTCACCTGTTTCATACTCCAAACTCAGTATCATGAATGATTGGTGTAACCGTGTAAGTGGATAGAGTACCAGTTCTGTCAGTTTTTTCTCTTTGCTGTAAGGATATTTTCCGTGTGTCTATGGAAAATGGGTCATTGCCAGATAAAAAAAAAA]
consensusID : consensus_11415#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 490 fasta sequence
[GACGACGCGGCCGGCGCGCAGCGACCCGCACCTGCCGCCGGAGGAGGCGGCGCGGCTGGAGGCCGAGGTGCGGGGCTACTTCGACAGCATGGCCCCCAGGCGCCCTTCCAAGCCGCCGCGGAGCGACCCGTCGGACGCCGGGGAGGGTGGGGTGGAGGCCGACGCCGACGCCGACCTGCCGGAGTTTCGGAGGCTCCGCGACCTCGAGGCCAAACCCCAGAAAGTTGGGGCTGGACGGTGGGGATGTGAACGGGAAGGAGTATGTGGAGACGCATAACACAAGGGGCTAATCGGCTCGAAAGCAACACCACCCGACTGCGTCCGGGTCTTACCCAGGGGAAAGCCCCAGGGGAGCTCCTTCGACGTGTCCACCGTTGCCGCTCACTCTGACGCATCACCGCCGCCTGCAGCCCCCCGCCCCCCCCGATCGGACGCCGCCCCCCAGCCCCCGAATGGCTGCAAAAGTGGTATCCGATCCTCACACATCTTA]
[+] EMBL CA755678 [GACGACGCGGCCGGCGCGCAGCGACCCGCACCTGCCGCCGGAGGAGGCGGCGCGGCTGGAGGCCGAGGTGCGGGGCTACTTCGACAGCATGGCCCCCAGGCGCCCTTCCAAGCCGCCGCGGAGCGACCCGTCGGACGCCGGGGAGGGTGGGGTGGAGGCCGACGCCGACGCCGACCTGCCGGAGTTTCGGAGGCTCCGCGACCTCGAGGCCAAACCCCAGAAAGTTGGGGCTGGACGGTGGGGATGTGAACGGGAAGGAGTATGTGGAGACGCATAACACAAGGGGCTAATCGGCTCGAAAGCAACACCACCCGACTGCGTCCGGGTCTTACCCAGGGGAAAGCCCCAGGGGAGCTCCTTCGACGTGTCCACCGTTGCCGCTCACTCTGACGCATCACCGCCGCCTGCAGCCCCCCGCCCCCCCCGATCGGACGCCGCCCCCCAGCCCCCGAATGGCTGCAAAAGTGGTATCCGATCCTCACACATCTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11415#0 GCCCGCCAACCCAGTCTTGGACCGAGCTGAGCCGCCATGGCGACGACGCGGCCGGCGCGC 60
consensus_11415#1 ------------------------------------------------------------
consensus_11415#2 ------------------------------------------------------------
consensus_11415#0 AGCGACCCGCACCTGCCGCCGGAGGAGGCGGCGCGGGTGGAGGCCGAGGTGCGGGGCTAC 120
consensus_11415#1 ------------------------------------------------------------
consensus_11415#2 ------------------------------------------------------------
consensus_11415#0 TTCGACAGCATGGCCCCCAGGCGCCCTTCCAAGCCGCCGCGGAGCGACCCGTCGGACGCC 180
consensus_11415#1 ------------------------------------------------------------
consensus_11415#2 ------------------------------------------------------------
consensus_11415#0 GGGGAGGGTGGGGCGGAGGCCGACGCCGACGCCGACCTGCCGGAGCTTCGGAGGCTCCGC 240
consensus_11415#1 ----------------------------------------------------GGCTCCGC 8
consensus_11415#2 ------------------------------------------------------------
consensus_11415#0 GACCTCGAGGCCAAACCCCAGAAGTTGGTGCTGGACGGTGGGGATGTGAACGGGGAGGAG 300
consensus_11415#1 GACCTCGAGGCCAAACCCCAGAAGTTGGTGCTGGACGGTGGGGATGTGAACGGGGAGGAG 68
consensus_11415#2 GACGACGCGGCCGGCGCGCAGCGACCCGCACCTGCCGCCGGAGGAGGCGGCGCGGCTGG- 59
*** ** **** * *** * * * ** ** * * ** ** *
consensus_11415#0 TATGTGGAGACGCAATACTACAACGGGCTCAATTGCATCGACAAGCAACACCACACGACT 360
consensus_11415#1 TATGTGGAGACGCAATACTACAACGGGCTCAATTGCATCGACAAGCAACACCACACGACT 128
consensus_11415#2 -AGGCCGAGGTGCGGGGCTACTTCGACAGCA-TGGCCCCCAGGCGCCCTTCCAAGCCGCC 117
* * *** ** **** ** ** * ** * * ** *** * *
consensus_11415#0 GGTACAGGGTTTATCAAAGTGGAAAGACCCAATGGTAGCTCCTTCAACGTGACAACCGTT 420
consensus_11415#1 GGTACAGGGTTTATCAAAGTGGAAAGACCCAATGGTAGCTCCTTCAACGTGACAACCGTT 188
consensus_11415#2 GCGGAGCGACCCGTCGGACGCCGGGGAGGGTGGGGTGGAGGC--CGACGC--CGACGCCG 173
* * ** * ** *** * * * *** * **
consensus_11415#0 GCCTACTCATCTGACAGCATTATCCGCTGCATGAGCAACCCTGCAACAAATGATTGGATA 480
consensus_11415#1 GCCTACTCATCTGACAGCATTATCCGCTGCATGAGCAACCCTGCAACAAATGATTGGATA 248
consensus_11415#2 ACCTGCCGGAGTTTCGG-AGGCTCCGCGACCTC-GAGGCCAAACCCCAGAAAGTTGGGGC 231
*** * * * * * ***** * * * ** * ** * ****
consensus_11415#0 CCATCCTCAGAGACGGT----------------TATTCCAGTTTCAAACAAGCCTAGCAG 524
consensus_11415#1 CCATCCTCAGAGACGGTATGGCAGTAAAAATGTTATTCCAGTTTCAAACAAGCCTAGCAG 308
consensus_11415#2 TGGACGGTGGGGATGTGA-----------ACGGGAAGGAGTATGTGGAGACGCATAACAC 280
* * ** * * * * * ** ** **
consensus_11415#0 GAGTGACTCCTGAGTCCTGACCGGGTTCCCTTCTGCTGTATGAATCTTTTTATAAATCAT 584
consensus_11415#1 GAGTGACTCCTGAGTCCTGACCGGGTTCCCTTCTGCTGTATGAATCTTTTTATAAATCAT 368
consensus_11415#2 AAGGGGCTAATCGGCTCGAAAGCAACACCACCCGACTGCGTCCGGGTCTTA--------- 331
** * ** * * * * ** * *** * * **
consensus_11415#0 CTGAAGAGAATAAAGAGCACATAGAGCAGCCACTTCTGTATATCGGAGGAACTCAGAGAA 644
consensus_11415#1 CTGAAGAGAATAAAGAGCACATAGAGCAGCCACTTCTGTATATCGGAGGAACTCAGAGAA 428
consensus_11415#2 CCCAGGGGAA-----AGCCC-CAGGGGAGCTCCTTCGACGTGTCCACCGT-TGCCGCTCA 384
* * * *** *** * ** * *** **** * ** * * * *
consensus_11415#0 AGGTAGAGAAATGAAAGCGC-TGCAACTGCAAGGTTTATAAGGCATGAATCTGTCCTGCT 703
consensus_11415#1 AGGTAGAGAAATGAAAGCGC-TGCAACTGCAAGGTTTATAAGGCATGAATCTGTCCTGCT 487
consensus_11415#2 CTCTGACGCATCACCGCCGCCTGCAGCCCCCCGCCCCCCCCGATCGGACGCCGCCC--CC 442
* * * *** **** * * * * ** * * ** *
consensus_11415#0 CTTAATCGTGTTTTATGTGAACTTGTCGTATGCAACTTCACTGTTCATACTCAAAACTCA 763
consensus_11415#1 CTTCATCGTGTTTTATGTGAACTTGTCGTATGCAACTTCACTGTTCATACTCCAAACTCA 547
consensus_11415#2 CAGCCCCCGAATGGCTGCAAAAGTGGTATCCG-ATCCTCACACATCTTA----------- 490
* * * ** ** ** * * * * **** ** **
consensus_11415#0 GTATCATGAATGATTGGTGTAACCGTGTAAGTGGATAGAGTACCAGTTCTGTCAGTTTTT 823
consensus_11415#1 GTATCATGAATGATTGGTGTAACCGTGTAAGTGGATAGAGTACCAGTTCTGTCAGTTTTT 607
consensus_11415#2 ------------------------------------------------------------
consensus_11415#0 TCTCTTTGCTGTAAGGATATTTTCCGTGTGTCTATGGAAAATGGGTCA------------ 871
consensus_11415#1 TCTCTTTGCTGTAAGGATATTTTCCGTGTGTCTATGGAAAATGGGTCATTGCCAGATAAA 667
consensus_11415#2 ------------------------------------------------------------
consensus_11415#0 -------
consensus_11415#1 AAAAAAA 674
consensus_11415#2 -------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||