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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11416#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 692 fasta sequence
[CTCCCTGATGCAATCCACTCAAGGAGATGATCCCTCCTGGTGCTCTTGTTATGCTCACCCCACTTATCGTCGGAATTCTGTTCGGCGTCGAGACCCTCTCTGGAGTCCTTGCTGGTGCTCTCGTCTCTGGTGTTCAGATTGCCATCTCCGCATCAAACACTGGCGGTGCTTGGGACAATGCAAAGAAATACA-TTGAGGCTGGAGCTTCAGAGCATGCCAGGACCCTTGGTCCCAAAGGTTCCGATCCCCACAAGGCGGCCGTCATCGGTGACACCATCGGAGACCCTCTCAAGGACACTTCAGGACCCTCTCTCAACATCCTCATCAAGCTCATGGCGGTCGAATCCCTCGTTTTCGCCCCCTTC-TTCGCCACCCA-CGGTGGT-ATCCTCTTCAAGTT-GTTCTAAACCGGCGACGTTGGGTGTAACA-AAGGCCA-TAGTTTT---GTTGGGG---ATGAG-CAAAATATGTAGACTATTTTGTCATGATTTGCTCCTTGAGTTGATGACTCCA-TTGTC-TACTTGATTTCCCA-TTTTTGTTCTA-GTT-CCAGGTT-CCAACCTTGTGTTTTGATCCCAGAATTTTCTCTGGTCCTCTTTAGCTTTTGTCTCCAGCTGCATAAGTCATCCTGTGGCACAGTGAACA-AGGAGCATTGGAAAATTTGCCATTTTCTAGCGATAAAATGATGAGGATGATGAAAAAAA]
[+] EMBL BI808574 [CTCCCTGATGCAATCCACTCAAGGAGATGATCCCTCCTGGTGCTCTTGTTATGCTCACCCCACTTATCGTCGGAATTCTGTTCGGCGTCGAGACCCTCTCTGGAGTCCTTGCTGGTGCTCTCGTCTCTGGTGTTCAGATTGCCATCTCCGCATCAAACACTGGCGGTGCTTGGGAC ATGCAAAGAAATACACTTGAGGCTGGAGCTTCAGAGCATGCCAGGACCCTTGGTCCCAAAGGTTCCGATCCCCACAAGGC GCCGTCATCGGTGACACCATCGGAGACCCTCTCAAGGACACTTCAGGACCCTCTCTCAACATCCTCATCAAGCTCATGGCGGTCGAATCCCTCGTTTTCGCCCCCTTC TTCGCCACCCA CGGTGGT ATCCTCTTCAAGTT GTTCTAAACCGGCGACGTTGGGTGTAAC AAGGCCA TAGTTTT GTTGGGG ATGAG CAAAATATGTAGACTATTTTGTCATGATTTGCTCCTTGAGTTGATGACTCCATTTGTC TAaaaaaaaa ]
[+] EMBL OSS10468A [ TGTTCAGATTGCCATCTCCGCATCAAACACTGGCGGTGCTTGGGACAATGCAAAGAAATACA TTGAGGCTGGAGCTTCAGAGCATGCCAGGACCCTTGGT CCAAAGGTTCCGATCCCCACAAGGCGGCCGTCATCGGTGACACCATCGGAGACCCTCTCAAGGACACTTCAGGACCCTCTCTCAACATCCTCATCAAGCTCATGGCGGTCGAATCCCTCGTTTTCGCCCCCTTC TTCGGCACCCA CGGTGGT ATCCTCTTCAAGTT GTTCTAAACCGGCGGCGTTGGGTGTAACA AAGGGCATTAGTTTTTTNTTTGGGGGGNTTGNGCCAAAATATGTAGGCTATTTTGTCATGATTTGCTCCTTGAGTTGNTGGCTCCA TTGTCTTACTTGNTTTCCCA TTTTTGTTCTAGGTTCCCGGGTTCCCAAC ]
[+] EMBL OSS10477A [ GTTCAGATTGCCATCTCCGCATCAAACACTGGCGGTGCTTGGGACAATGCAAAGAAATACA TTGAGGCTGGAGCTTCAGAGCATGCCAGGACCCTTGGTCCCAAAGGTTCCGATCCCCACAAGGCGGCCGTCATCGGTGACACCATCGGAGACCCTCTCAAGGACACTTCAGGACCCTCTCTCAACATCCTCATCAAGCTCATGGCGGTCGAATCCCTCGTTTTCGCCCCCTTC TTCGCCACCCA CGGTGGT ATCCTCTTCAAGTT GTTCTAAACCGGCGACGTTGGGTGTAACA AAGGNCA TAGTTTT GTTGGGG ATGAG CAAAATATGTAGACTATTTTGTCATGATTT ]
[+] EMBL OSS10149A [ GTTCAGATTGCCATCTCCGCATCAAACACTGGCGGTGCTTGGGACAATGCAAAGAAATACA TTGAGGCTGGAGCTTCAGAGCATGCCAGGACCCTTGGTCCCAAAGGTTCCGATCCCCACAAGGCGGCCGTCATCGGTGACACCATCGGAGACCCTCTCAAGGACACTTCAGGACCCTCTCTCAACATCCTCATCAAGCTCATGGCGGTCGAATCCCTCGTTTTCGCCCCCTTC TTCGCCACCCA CGGTGGTAATCCTCTTCAAGTT GTTCTAAACCGGCGACGTTGGGTGTAACA AAGGCCA TAGTTTT NTTGGGG ATGAG CAAAATATGTAGACTATTTTGTCATGATTTGCTCCTTGAGTTGATGACTCC ]
[+] EMBL BE228418 [ gagGGAG TTCAGAGCATGCCAGGA CCTTGGTCCCAAAGGTTCCGATCCCCACAAGGCGGCCGTCATCGGTGACACCATCGGAGACCCTCTCAAGGACACTTCAGGACCCTCTCTCAACATCCTCATCANGCTCATGGCGGTCGAATCCCTCGTTTTCGCCCCCTTC TTCGCCACCCA CGGTGGT ATCCTCTTCAAGTT GTTCTAAACCGGCGACGTTGGGTGTNACA AAGGCCA TAGTTTT GTTGGGG ATGAG CAAAATATGTNGACTATTTTGTCATGATTTGCTCCTTGAGTTGATGACTCCA TTGTC TACTTGATTTCCCA TTTTTGTTCTA GTT CCAG ]
[+] EMBL CA999609 [ TCCGATCCCCACAAGGCGGCCGTCATCGGTGACACCATCGGAGACCCTCTCAAGGACACTTCAGGACCCTCTCTCAACATCCTCATCAAGCTCATGGCGGTCGAATCCCTCGTTTTCGCCCCCTTC TTCGCCACCCA CGGTGGT ATCCTCTTCAAGTT GTTCTAAACCGGCGACGTTGGGTGTAACA AAGGCCA TAGTTTT GTTGGGG ATGAG CAAAATATGTAGACTATTTTGTCATGATTTGCTCCTTGAGTTGATGACTCCA TTGTC TACTTGATTTCCCA TTTTTGTTCTA GTT CCAGGTT CCAACCTTGTGTTTTGATCCCAGAATTTTCTCTGGTCCTCTTTAGCTTTTGTCTCCAGCTGCATAAGTCATCCTGTGGCACAGTGAACA AGGAGCATTGGAAAATTTGCCATTTTCTAGCGATAAAATGATGAGGATGATGA ]
[+] EMBL BI812671 [ ATCAAGCTCATGGCGGTCGAATCCCTCGTTTTCGCCCCCTTCGTTCGCCACCCACCGGTGGT ATCCTCTTCAAGTTGGTTCTAAACCGGCGAC TTGGGTGTAACACAAGGCCA TA TTTT TTGGGG ATGA CCAAATATGTAGACTATTTTGTCATGATTTGCTCCTTGAGTTGATGACTCCC TTGTC TACTTGATTTCCCACTTTTTGTTCTA GTT CCCGGTT CCCACCTTGTGTTTTGATCCCAGAATTTTCTCTGGTCCTCTTTAGCTTTTGTCTCCAGCTGCATAAGTCATCCTGTGGCCCAGTGAACACAGGAGCCTTGGAAAATTTGCCCTTTTCTAGCGATAAAATGATGAGGATGAAAAAAAAAA]
[+] EMBL AU069824 [ ATGACTCCA TTGTC TACTTGATTTCCCA TTTTTTTNCTA GTT CCAGGTT CCAACCTTGTGTTTTGATCCCAGAATTTNCTCTGGTCCTCTTTAGCTTTTGTNTCCAGCTGCATAAGTCATCCTGTGGCACAGTGAACA AGGAGCATTGGAAAATTTGCCATTTTC ]
consensusID : consensus_11416#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence
[AGCATGCCAGGACCCTTGGTCCCAAAGGTTCCGATCCCCACAAGGCGGCCGTCATCGGTGACACCATCGGAGACCCTCTCAAGGACACTTCAGGACCCTCTCTCAACATCCTCATCAAGCTCATGGCGGTCGAATCCCTCGTTTDRRVCCCTTCTTHDVCACCCACGGTGGTAATCCTCTTCAAGTTGTTCTAAACCSGCGACGTTGGGTGTTACAAAGGCCATAGTTTTGTTTGGGGATGAGCAAAATATGTAGACTATWTTTGTCATGAAWTTGCTCCCTGAGAKTGATGACTCCAYWTGTCTACACTGARWTTCCCAWATTTTGTKTSTAGAGTCCMSRGKTCCMACCTTGTGTKTTTGADTMCCMSAAATTTTCTCTCGGG]
[+] EMBL AA752682 [AGCATGCCAGGACCCTTGGTCCCAAAGGTTCCGATCCCCACAAGGCGGCCGTCATCGGTGACACCATCGGAGACCCTCTCAAGGACACTTCAGGACCCTCTCTCAACATCCTCATCAAGCTCATGGCGGTCGAATCCCTCGTTTDRRVCCCTTCTTHDVCACCCACGGTGGTAATCCTCTTCAAGTTGTTCTAAACCSGCGACGTTGGGTGTTACAAAGGCCATAGTTTTGTTTGGGGATGAGCAAAATATGTAGACTATWTTTGTCATGAAWTTGCTCCCTGAGAKTGATGACTCCAYWTGTCTACACTGARWTTCCCAWATTTTGTKTSTAGAGTCCMSRGKTCCMACCTTGTGTKTTTGADTMCCMSAAATTTTCTCTCGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11416#0 CTCCCTGATGCAATCCACTCAAGGAGATGATCCCTCCTGGTGCTCTTGTTATGCTCACCC 60
consensus_11416#1 ------------------------------------------------------------
consensus_11416#0 CACTTATCGTCGGAATTCTGTTCGGCGTCGAGACCCTCTCTGGAGTCCTTGCTGGTGCTC 120
consensus_11416#1 ------------------------------------------------------------
consensus_11416#0 TCGTCTCTGGTGTTCAGATTGCCATCTCCGCATCAAACACTGGCGGTGCTTGGGACAATG 180
consensus_11416#1 ------------------------------------------------------------
consensus_11416#0 CAAAGAAATACATTGAGGCTGGAGCTTCAGAGCATGCCAGGACCCTTGGTCCCAAAGGTT 240
consensus_11416#1 ------------------------------AGCATGCCAGGACCCTTGGTCCCAAAGGTT 30
******************************
consensus_11416#0 CCGATCCCCACAAGGCGGCCGTCATCGGTGACACCATCGGAGACCCTCTCAAGGACACTT 300
consensus_11416#1 CCGATCCCCACAAGGCGGCCGTCATCGGTGACACCATCGGAGACCCTCTCAAGGACACTT 90
************************************************************
consensus_11416#0 CAGGACCCTCTCTCAACATCCTCATCAAGCTCATGGCGGTCGAATCCCTCGTTTTCGCCC 360
consensus_11416#1 CAGGACCCTCTCTCAACATCCTCATCAAGCTCATGGCGGTCGAATCCCTCGTTTD-RRVC 149
****************************************************** *
consensus_11416#0 CCTTCTTCGCCACCCACGGTGGTA-TCCTCTTCAAGTTGTTCTAAACCGGCGACGTTGGG 419
consensus_11416#1 CCTTCTTHDVCACCCACGGTGGTAATCCTCTTCAAGTTGTTCTAAACCSGCGACGTTGGG 209
******* ************** *********************** ***********
consensus_11416#0 TGTAACAAAGGCCATAGTTTTGTT-GGGGATGAGCAAAATATGTAGACTATTTT-GTCAT 477
consensus_11416#1 TGTTACAAAGGCCATAGTTTTGTTTGGGGATGAGCAAAATATGTAGACTATWTTTGTCAT 269
*** ******************** ************************** ** *****
consensus_11416#0 GA-TTTGCTCCTTGAG-TTGATGACTCCATT-GTCTAC--TTGATTTCCCAT-TTTTGTT 531
consensus_11416#1 GAAWTTGCTCCCTGAGAKTGATGACTCCAYWTGTCTACACTGARWTTCCCAWATTTTGTK 329
** ******* **** *********** ****** * ****** ******
consensus_11416#0 CT---AGTTCCAGGTTCCAACCTTGTGTTTT--GATCCCAGAA-TTTTCTCTGGTCCTCT 585
consensus_11416#1 TSTAGAGTCCMSRGKTCCMACCTTGTGTKTTTGADTMCCMSAAATTTTCTCTCGGG---- 385
*** * * *** ********* ** * ** ** ******** *
consensus_11416#0 TTAGCTTTTGTCTCCAGCTGCATAAGTCATCCTGTGGCACAGTGAACAAGGAGCATTGGA 645
consensus_11416#1 ------------------------------------------------------------
consensus_11416#0 AAATTTGCCATTTTCTAGCGATAAAATGATGAGGATGATGAAAAAAA 692
consensus_11416#1 -----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||