cluster # 1143

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Oryza sativa
cluster # 1143 cluster # 1143 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1143#0 length = 612 sequences # 1

consensus_1143#1 length = 342 sequences # 1

consensusID : consensus_1143#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 612
fasta sequence

                              [TTGGTGCCGCCGCCCCTTGCCCACCGCCAGCTCGTCCTCTCCCCTACTAGGCCAGCTCCGCCTTGTCCTCCTCAGGCCACTGCTGCCATCTCATCCTCGGCCGGGGCGCCGCCGCTCGCCAGCCCTCAATTGGGTCGCCGCTGGCTAGTCCACCAGGCCGCCGGCAGCCCGTCCTCGCCCATTGACAGCCGCCGGTTCCCCGTCGCCGCCACATCTATCTTCGATCGTCTTCGCTAGCTGCCTGCCGCGGCGCTGGTTTCACGGCTCAGACGGCTCCGTCGGTGGCAGGGATTTGCTATGGCAGAAAGTTGTTTGATGATTTGGTTAGTAAAAATCTATTATACAGAGGTAGATTGTAAAGAAGAAATATATCATGCTGTGAAGAAGGGAGGAGCTCAAGCAAGTGTTAGCATATGATTCATTCTAAATTTCTTTTTAGAGATGCAAATCTCATTTTTTGTATGATTGTTGACCTGACATGTTAATAACAATTGCTCTTAATATAATTACCTTCTCATTGATTCAAATGTATTACGGTTTTTTGGCATTTGATATGTTGATGCAATAATATATATGATATTCAGATGTGAAAAANNAAAAAAAAAAAAAAAA]

[+] EMBL CA754470             [TTGGTGCCGCCGCCCCTTGCCCACCGCCAGCTCGTCCTCTCCCCTACTAGGCCAGCTCCGCCTTGTCCTCCTCAGGCCACTGCTGCCATCTCATCCTCGGCCGGGGCGCCGCCGCTCGCCAGCCCTCAATTGGGTCGCCGCTGGCTAGTCCACCAGGCCGCCGGCAGCCCGTCCTCGCCCATTGACAGCCGCCGGTTCCCCGTCGCCGCCACATCTATCTTCGATCGTCTTCGCTAGCTGCCTGCCGCGGCGCTGGTTTCACGGCTCAGACGGCTCCGTCGGTGGCAGGGATTTGCTATGGCAGAAAGTTGTTTGATGATTTGGTTAGTAAAAATCTATTATACAGAGGTAGATTGTAAAGAAGAAATATATCATGCTGTGAAGAAGGGAGGAGCTCAAGCAAGTGTTAGCATATGATTCATTCTAAATTTCTTTTTAGAGATGCAAATCTCATTTTTTGTATGATTGTTGACCTGACATGTTAATAACAATTGCTCTTAATATAATTACCTTCTCATTGATTCAAATGTATTACGGTTTTTTGGCATTTGATATGTTGATGCAATAATATATATGATATTCAGATGTGAAAAANNAAAAAAAAAAAAAAAA]




>consensus_1143#0
TTGGTGCCGCCGCCCCTTGCCCACCGCCAGCTCGTCCTCTCCCCTACTAGGCCAGCTCCG
CCTTGTCCTCCTCAGGCCACTGCTGCCATCTCATCCTCGGCCGGGGCGCCGCCGCTCGCC
AGCCCTCAATTGGGTCGCCGCTGGCTAGTCCACCAGGCCGCCGGCAGCCCGTCCTCGCCC
ATTGACAGCCGCCGGTTCCCCGTCGCCGCCACATCTATCTTCGATCGTCTTCGCTAGCTG
CCTGCCGCGGCGCTGGTTTCACGGCTCAGACGGCTCCGTCGGTGGCAGGGATTTGCTATG
GCAGAAAGTTGTTTGATGATTTGGTTAGTAAAAATCTATTATACAGAGGTAGATTGTAAA
GAAGAAATATATCATGCTGTGAAGAAGGGAGGAGCTCAAGCAAGTGTTAGCATATGATTC
ATTCTAAATTTCTTTTTAGAGATGCAAATCTCATTTTTTGTATGATTGTTGACCTGACAT
GTTAATAACAATTGCTCTTAATATAATTACCTTCTCATTGATTCAAATGTATTACGGTTT
TTTGGCATTTGATATGTTGATGCAATAATATATATGATATTCAGATGTGAAAAANNAAAA
AAAAAAAAAAAA

consensusID : consensus_1143#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 342
fasta sequence

                              [TGCCGCCGCCCCTTGCCCACCGCCAGCTCGTCCTCTCCCCTACTAGGCCAGCTCCGCCTTGTCCTCCTCAGGCCACTGCTGCCATCTCATCCTCGGCCGGGGCGCCGCCGCTCGCCAGCCCTCAATTGGGTCGCCGCTGGCTAGTCCACCAGGCCGCCGGCAGCCCGTCCTCGCCCATTGACAGCCGCCGGTTCCCCGTCGCCGCCACATCTATCTTCGATCGTCTTCGCTAGCTGCCTGCCGCGGCGCTGGTTTCACGGCTCANACGGCTCCGTCGGTGGCAGGTATGTTCTCTNGTCCCCTTGATAGCTAGGGGAAAACTAATGTGTNCCTAAGAAAAAC]

[+] EMBL OS1682A              [TGCCGCCGCCCCTTGCCCACCGCCAGCTCGTCCTCTCCCCTACTAGGCCAGCTCCGCCTTGTCCTCCTCAGGCCACTGCTGCCATCTCATCCTCGGCCGGGGCGCCGCCGCTCGCCAGCCCTCAATTGGGTCGCCGCTGGCTAGTCCACCAGGCCGCCGGCAGCCCGTCCTCGCCCATTGACAGCCGCCGGTTCCCCGTCGCCGCCACATCTATCTTCGATCGTCTTCGCTAGCTGCCTGCCGCGGCGCTGGTTTCACGGCTCANACGGCTCCGTCGGTGGCAGGTATGTTCTCTNGTCCCCTTGATAGCTAGGGGAAAACTAATGTGTNCCTAAGAAAAAC]




>consensus_1143#1
TGCCGCCGCCCCTTGCCCACCGCCAGCTCGTCCTCTCCCCTACTAGGCCAGCTCCGCCTT
GTCCTCCTCAGGCCACTGCTGCCATCTCATCCTCGGCCGGGGCGCCGCCGCTCGCCAGCC
CTCAATTGGGTCGCCGCTGGCTAGTCCACCAGGCCGCCGGCAGCCCGTCCTCGCCCATTG
ACAGCCGCCGGTTCCCCGTCGCCGCCACATCTATCTTCGATCGTCTTCGCTAGCTGCCTG
CCGCGGCGCTGGTTTCACGGCTCANACGGCTCCGTCGGTGGCAGGTATGTTCTCTNGTCC
CCTTGATAGCTAGGGGAAAACTAATGTGTNCCTAAGAAAAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1143#0      TTGGTGCCGCCGCCCCTTGCCCACCGCCAGCTCGTCCTCTCCCCTACTAGGCCAGCTCCG 60
consensus_1143#1      ----TGCCGCCGCCCCTTGCCCACCGCCAGCTCGTCCTCTCCCCTACTAGGCCAGCTCCG 56
                          ********************************************************

consensus_1143#0      CCTTGTCCTCCTCAGGCCACTGCTGCCATCTCATCCTCGGCCGGGGCGCCGCCGCTCGCC 120
consensus_1143#1      CCTTGTCCTCCTCAGGCCACTGCTGCCATCTCATCCTCGGCCGGGGCGCCGCCGCTCGCC 116
                      ************************************************************

consensus_1143#0      AGCCCTCAATTGGGTCGCCGCTGGCTAGTCCACCAGGCCGCCGGCAGCCCGTCCTCGCCC 180
consensus_1143#1      AGCCCTCAATTGGGTCGCCGCTGGCTAGTCCACCAGGCCGCCGGCAGCCCGTCCTCGCCC 176
                      ************************************************************

consensus_1143#0      ATTGACAGCCGCCGGTTCCCCGTCGCCGCCACATCTATCTTCGATCGTCTTCGCTAGCTG 240
consensus_1143#1      ATTGACAGCCGCCGGTTCCCCGTCGCCGCCACATCTATCTTCGATCGTCTTCGCTAGCTG 236
                      ************************************************************

consensus_1143#0      CCTGCCGCGGCGCTGGTTTCACGGCTCAGACGGCTCCGTCGGTGGCAGGGATTTGCTATG 300
consensus_1143#1      CCTGCCGCGGCGCTGGTTTCACGGCTCANACGGCTCCGTCGGTGGCAGGTATGTTCTCTN 296
                      **************************** ******************** ** * ** * 

consensus_1143#0      GCAGAAAGTTGTTTGATGATTTGGTTAGTAAAAATCTATTATACAGAGGTAGATTGTAAA 360
consensus_1143#1      GT------CCCCTTGATAGCTAGGGGAAAACTAATGTGTNCCTAAGAAAAAC-------- 342
                      *           *****   * **  *  *  *** * *     ***   *         

consensus_1143#0      GAAGAAATATATCATGCTGTGAAGAAGGGAGGAGCTCAAGCAAGTGTTAGCATATGATTC 420
consensus_1143#1      ------------------------------------------------------------
                                                                                  

consensus_1143#0      ATTCTAAATTTCTTTTTAGAGATGCAAATCTCATTTTTTGTATGATTGTTGACCTGACAT 480
consensus_1143#1      ------------------------------------------------------------
                                                                                  

consensus_1143#0      GTTAATAACAATTGCTCTTAATATAATTACCTTCTCATTGATTCAAATGTATTACGGTTT 540
consensus_1143#1      ------------------------------------------------------------
                                                                                  

consensus_1143#0      TTTGGCATTTGATATGTTGATGCAATAATATATATGATATTCAGATGTGAAAAANNAAAA 600
consensus_1143#1      ------------------------------------------------------------
                                                                                  

consensus_1143#0      AAAAAAAAAAAA 612
consensus_1143#1      ------------