These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11444#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 678 fasta sequence [CACCATTACTCATCTCTAGTTCAGACACTAATTATTAACATACACACATTAATTAGTGTGTTCTTCATCATCGCCGGCGATCGAGCGAAGGCGACGATGTTTTGCTTGCTGCATCGGCTGTTCCCGTTCCTGGTTGGCACGGCCGTCGGCGTGTACGCGGCGCAGAATTACAAGGTCCCCAACCTCCGGGGACTCGCCGACCGCGGCGTCGACGCCGCCAAGCAATACGAGGAGGCCTACCGCAAGAAGCCCTCCTCCGGCGCCGGCGCCGGCGGCGGGAGCAAGAAGAGGATGAACAAGGCCGTGGAGATCGACGACGATGAAGAGTAACTAAGTTACTGATAGCTAGAGATGCAAGCAGGTCGACCTACGATGAACCGAACCCACTTATAGGTCAAATAAATAACCCGTGGATTTTCGGGTCGTGGCTCGGCTTGTCACATCTATAGATGCAAGTGAATTAGTGGATAATCCGCATAGTTTTGCTTATAAACAGGTTCGTGGGTTGGTCCACTTGCATTCCTACTGATGCTGGCTCCTACCCCATCCAAGCTGCAAGGAGTATATATGCTCTACAAAAACGAGCAACTAGTGTATAAGTTAAATTGTTTAGCGTATGTATGTACAAACTAACTGCTATATTCGTCTCAAAATATAACAACGTGAGACTGTCCAAAT] [+] EMBL AK063249 [CACCATTACTCATCTCTAGTTCAGACACTAATTATTAACATACACACATTAATTAGTGTGTTCTTCATCATCGCCGGCGATCGAGCGAAGGCGACGATGTTTTGCTTGCTGCATCGGCTGTTCCCGTTCCTGGTTGGCACGGCCGTCGGCGTGTACGCGGCGCAGAATTACAAGGTCCCCAACCTCCGGGGACTCGCCGACCGCGGCGTCGACGCCGCCAAGCAATACGAGGAGGCCTACCGCAAGAAGCCCTCCTCCGGCGCCGGCGCCGGCGGCGGGAGCAAGAAGAGGATGAACAAGGCCGTGGAGATCGACGACGATGAAGAGTAACTAAGTTACTGATAGCTAGAGATGCAAGCAGGTCGACCTACGATGAACCGAACCCACTTATAGGTCAAATAAATAACCCGTGGATTTTCGGGTCGTGGCTCGGCTTGTCACATCTATAGATGCAAGTGAATTAGTGGATAATCCGCATAGTTTTGCTTATAAACAGGTTCGTGGGTTGGTCCACTTGCATTCCTACTGATGCTGGCTCCTACCCCATCCAAGCTGCAAGGAGTATATATGCTCTACAAAAACGAGCAACTAGTGTATAAGTTAAATTGTTTAGCGTATGTATGTACAAACTAACTGCTATATTCGTCTCAAAATATAACAACGTGAGACTGTCCAAAT] consensusID : consensus_11444#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 616 fasta sequence [ATCTGAAGTTCAGACACACACACACTGACACAAACATATATACTTACATATAAATACAGATATATATAGGTGGTTAGCTACCTGTATAGTTTATACATTAGCTAGCGTATGTGTTGTTGTTGATCATCGATCGCCGGCGACGACAGGGAGAGATCGATCCACGATGGGTTGCCTGCTGCGGCGGCTGTTCCCGTTCCTGGTCGGCACGGCGGTGGGCGTGTACGCGGCGCAGAATTACAAGGTCCCCAACCTCCGGGGCCTCGCCGACCGCGGCGTCGACGCCGCCAAGCACTACGAGGAGGCCTACCGCAAGAAGCCCTCCGCCGGCGGCGGCGGCGGCGGGAGCAGGAAGAAGATGAACAAGACCGTCGAGATCGACGACGACGAGGAGTAAATTAGTTGATACTGCTAGTGCTAGCTCACTAGTTATTACATTTTCTATGAAAACGAGCAGCTAGTGTGTATGATATGTAAATTATTGGAATGTTCTTATGTGTACACGTAAAACTTATACGTAAACCTTATTTGTACTGTTTCTAAATTAAAAAATTAAAAAGAACGGATATATTAATAAAAAAAAAGGACGAAAAATTGATCANNAAAAAAAAAAAAAAAA] [+] EMBL OSC109941 [ATCTGAAGTTCAGACACACACACACTGACACAAACATATATACTTACATATAAATACAGATATATATAGGTGGTTAGCTACCTGTATAGTTTATACATTAGCTAGCGTATGTGTTGTTGTTGATCATCGATCGCCGGCGACGACAGGGAGAGATCGATCCACGATGGGTTGCCTGCTGCGGCGGCTGTTCCCGTTCCTGGTCGGCACGGCGGTGGGCGTGTACGCGGCGCAGAATTACAAGGTCCCCAACCTCCGGGGCCTCGCCGACCGCGGCGTCGACG CGCCAAGCACTACGAGGAGGCCTACCGCAAGAAGCCCTCCG ] [+] EMBL AU100647 [ TCTGAAGTTCAGACACACACACACTGACACAAACATATATACTTACATATAAATACAGATATATATAGGTGGTTAGCTACCTGTATAGTTTATACATTAGCTAGCGTATGTGTTGTTGTTGATCATCGATCGCCGGCGACGACAGGGAGAGATCGATCCACGATGGGTTGCCTGCTGCGGCGGCTGTTCCCGTTCCTGGTCGGCACGGCGGTGGGCGTGTACGCGGCGCAGAATTACAAGGTCCCCAACCTCCGGGGCCTCGCCGACCGCGGCGTCGACGCCGCCAAGCACTACGAGGAGGCCTACCGCAAGAAGCCCTNCGCCGGCGGCGGCGGCGGCGGGAGCAGGAAGAAGATGAACAAGACCGTCGAGATCGACGACGACGAGGAGTAAATTAGTTGATACTGCTAGTGCTAGCTCACTAGTTATTACATTTTCTATGAAAACGAGCAGCTAGTGTGTATGATATGTAAATTATTGGAATGTTCTTATGTGTACACGTAAAACTTATACGTAAACCTTATTTGTACTGTTTCTAAATTAAAAAATTAAAAAGAACGGATATATTAATAAAAAAA ] [+] EMBL AU063724 [ TGAAGTTCAGACACACACACACTGACACAAACATATATACTTACATATAAATACAGATATATATAGGTGGTTAGCTACCTGTATAGTTTATACATTAGCTAGCGTATGTGTTGTTGTTGATCATCGATCGCCGGCGACGACAGGGAGAGATCGATCCACGATGGGTTGCCTGCTGCGGCGGCTGTTCCCGTTCCTGGTCGGCACGGCGGTGGGCGTGTACGCGGCGCAGAATTACAAGGTCCCCAACCTCCGGGGCCTCGCCGACCGCGGCGTCGACGCCGCCAAGCACTACGAGGAGGCCTACCGCAAGAAGCCCTCCGCCGGCGGCGGCGGCGGCGGGAGCAGGAAGAAGATGAACAAGACCGTCGAGATCGACGACGACGAGGAGTAAATTAGTTGATACTGCTAGTGCTAGCT ] [+] EMBL AU063653 [ TGAAGTTCAGACACACACACACTGACACAAACATATATACTTACATATAAATACAGATATATATAGGTGGTTAGCTACCTGTATAGTTTATACATTAGCTAGCGTATGTNTTGTTGTTGATCATCGATCGCCGGCGACGACAGGGAGAGATCGATCCACGATGGGTTGCCTGCTGCGGCGGCTGTTCCCGTTCCTGGTCGGCACGGCGGTGGGCGTGTACACGGCGCAGAATTACAAGGTCCCCAACCTCCGGGGCCTCGNCGACCGCGGCGTCGACG CGCAAAGCACTACGAGGAGGCCTACCGCAAGAAGCCCTNCGACGGCGG GGCGGCGGCGGGAGCAGGANGAAGCTGAACAAGACCGTCGAGATCGACGACGACGANGAGTAAATT ] [+] EMBL D42586 [ CACACNCACTGACACANACATATATACTTACATNTAAATACAGATANATATAGGTGGNTAGCTACCTGTATAGTTTATACATTAGCTAGCGTATGTGGTGTTGTTGATCATCGATCGCCGGCGACGACAGGGAGAGNTCGAT ] [+] EMBL AU182168 [ TTAGCTAGCGTATGTGTTGTTGTTGATCATCGATCGCCGGCGACGACAGGGAGAGATCGATCCNCGATGGGTTGCCTGCTGCGGCGGCTGTTCCCGTTCCTGGTCGGCACGGCGGTGGGCGTGTACGCGGCGCAGAATTACAAGGTCCCCAACCTCCGGGGCCTCGCCGACCGCGGCGTCGACGCCGCCAAGCACTACGAGGAGGCCTACCGCAAGAAGCCCTCCGCCGGCGGCGGCGGCGGCGGGAGCAGGAAGAAGATGAACAAGACCGTCGAGATCGACGACGACGAGGAGTAAATTAGTTGATACTGCTAGTGCTAGCTCACTAGTTATTACATTTTCTATGAAAACGAGCAGCTAGTGTGTATGATATGTAAATTATTGGAATGTTCTTATGTGTACACGTAAAACTTATACGTAAAaaa ] [+] EMBL CF318810 [ ATACTGCTAGTGCTAGCTCACTAGTTATTACATTTTCTATGAAAACGAGCAGCTAGTGTGTATGATATGTAAATTATTGGAATGTTCTTATGTGTACACGTAAAACTTATACGTAAACCTTATTTGTACTGTTTCTAAATTAAAAAATTAAAAAGAACGGATATATTAATAAAAATAAAGGACGAAAAATTGATCANNAAAAAAAAAAAAAAAA] consensusID : consensus_11444#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence [TAGCGTATGTGTTGTTTGTTTGATCATCGGATCGCCGGGNGGACGGCCAAGGAAGAGATCGATTCCNCGATGGGGTTGCCCTGCTGCGGCCGGCTGTTCCCNGTTTCCTGGTCGGCNCCGGCGGGTGGGCGTGTACNCGGCGCAAAAATTCCAAGGTCCCCCAACCTCCGGGGCCCTCGCCGACCGNGGGCGTGACGCCCGCCCAAGCACTACGAGGAGGCCTTNCCGCAAGAAGCCCTCCCCCGGCGGCGGCGGCGGCGGGAGCAGGAAGAAGATGAACAAGACCGTCGAGATCGACGACGACGAGGAGTAAATTAGTTGATACTGCTAGTGCTAGCTCACTAGTTATTACATTTTCTATGAAAACGAGCAGCTAGTGTGTATGATATGTAAATTATTGGAATGTTCTTATGTGTACACGTAAAACTTATACGTAAAAAA] [+] EMBL AU172381 [TAGCGTATGTGTTGTTTGTTTGATCATCGGATCGCCGGGNGGACGGCCAAGGAAGAGATCGATTCCNCGATGGGGTTGCCCTGCTGCGGCCGGCTGTTCCCNGTTTCCTGGTCGGCNCCGGCGGGTGGGCGTGTACNCGGCGCAAAAATTCCAAGGTCCCCCAACCTCCGGGGCCCTCGCCGACCGNGGGCGTGACGCCCGCCCAAGCACTACGAGGAGGCCTTNCCGCAAGAAGCCCTCCCCCGGCGGCGGCGGCGGCGGGAGCAGGAAGAAGATGAACAAGACCGTCGAGATCGACGACGACGAGGAGTAAATTAGTTGATACTGCTAGTGCTAGCTCACTAGTTATTACATTTTCTATGAAAACGAGCAGCTAGTGTGTATGATATGTAAATTATTGGAATGTTCTTATGTGTACACGTAAAACTTATACGTAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11444#1 ATCTGAAGTTCAGACACACACACACTGACACAAACATATATACTTACATATAAATACAGA 60 consensus_11444#2 ------------------------------------------------------------ consensus_11444#0 ------------------------------------------------------------ consensus_11444#1 TATATATAGGTGGTTAGCTACC-TGTATAGTTTATACATTAGCTAGCGTATGTGTTGTT- 118 consensus_11444#2 -------------------------------------------TAGCGTATGTGTTGTTT 17 consensus_11444#0 ----CACCATTACTCATCTCTAGTTCAGACACTAATTATTAACATACACACAT-TAATTA 55 * * * * ** consensus_11444#1 -GTTGATCATCG-ATCGCCGGC--GACGAC--AGGGAGAGATCGAT-CCACGATGGG-TT 170 consensus_11444#2 GTTTGATCATCGGATCGCCGGGNGGACGGCCAAGGAAGAGATCGATTCCNCGATGGGGTT 77 consensus_11444#0 GTGTGTTCTTC--ATCATCGCC--GGCGATCGAGCGAAGG-------CGACGATGTT-TT 103 ** ** ** *** ** * ** ** * * * ***** ** consensus_11444#1 GCC-TGCTGCGGC-GGCTGTTCCCG--TTCCTGGTCGGCAC-GGCGG-TGGGCGTGTACG 224 consensus_11444#2 GCCCTGCTGCGGCCGGCTGTTCCCNGTTTCCTGGTCGGCNCCGGCGGGTGGGCGTGTACN 137 consensus_11444#0 GCT-TGCTGCATC-GGCTGTTCCCG--TTCCTGGTTGGCAC-GGCCG-TCGGCGTGTACG 157 ** ****** * ********** ******** *** * *** * * ********* consensus_11444#1 CGGCGCAGAA-TTACAAGGTCCCC-AACCTCCGGGGCC-TCGCCGACCGCGGCGTCGACG 281 consensus_11444#2 CGGCGCAAAAATTCCAAGGTCCCCCAACCTCCGGGGCCCTCGCCGACCGNGGGCGTGACG 197 consensus_11444#0 CGGCGCAGAA-TTACAAGGTCCCC-AACCTCCGGGGAC-TCGCCGACCGCGGCGTCGACG 214 ******* ** ** ********** *********** * ********** ** **** consensus_11444#1 CCG--CCAAGCACTACGAGGAGGCCT-ACCGCAAGAAGCCCTCCGCCGGCGGCGGCG--- 335 consensus_11444#2 CCCGCCCAAGCACTACGAGGAGGCCTTNCCGCAAGAAGCCCTCCCCCGGCGGCGGCG--- 254 consensus_11444#0 CCG--CCAAGCAATACGAGGAGGCCT-ACCGCAAGAAGCCCTCCTCCGGCGCCGGCGCCG 271 ** ******* ************* **************** ****** ***** consensus_11444#1 GCGGCGGGAGCAGGAAGAAGATGAACAAGACCGTCGAGATCGACGACGACGAGGAGTAAA 395 consensus_11444#2 GCGGCGGGAGCAGGAAGAAGATGAACAAGACCGTCGAGATCGACGACGACGAGGAGTAAA 314 consensus_11444#0 GCGGCGGGAGCAAGAAGAGGATGAACAAGGCCGTGGAGATCGACGACGATGAAGAGTAAC 331 ************ ***** ********** **** ************** ** ****** consensus_11444#1 TTAGTTGATACT-GCTAGTGCTAGCTCACTAGTTATTACATTTTCTATGAAAACGA---G 451 consensus_11444#2 TTAGTTGATACT-GCTAGTGCTAGCTCACTAGTTATTACATTTTCTATGAAAACGA---G 370 consensus_11444#0 TAAGTTACTGATAGCTAGAGAT-GCAAGCAGGTCGACCTACGATGAACCGAACCCACTTA 390 * **** * * ***** * * ** * ** * * * ** * * consensus_11444#1 CAGCTAGTGTGTATGATATGTAAATTATTGGAATGT-----------TCTTATGTGTACA 500 consensus_11444#2 CAGCTAGTGTGTATGATATGTAAATTATTGGAATGT-----------TCTTATGTGTACA 419 consensus_11444#0 TAGGTCAAATAAATAACCCGTGGATTTTCGGGTCGTGGCTCGGCTTGTCACATCTATAGA 450 ** * * ** * ** *** * ** ** ** ** * ** * consensus_11444#1 CGTAA---AACTTATACGTAAACCTTATTTGTACTGTTTCTAAATTAAAAAATTAAAAAG 557 consensus_11444#2 CGTAA---AACTTATACGTAAAAAA----------------------------------- 441 consensus_11444#0 TGCAAGTGAATTAGTGGATAATCCGCATA-GTTTTGCTTATAAACAGGTTCGTGGGTTGG 509 * ** ** * * *** consensus_11444#1 AACGGATATATTAATAAAAAAAAAGGACGAAAAATTGATCANNAAAAAAAAAAAAAAAA- 616 consensus_11444#2 ------------------------------------------------------------ consensus_11444#0 TCCACTTGCATTCCTACTGATGCTGGCTCCTACCCCATCCAAGCTGCAAGGAGTATATAT 569 consensus_11444#1 ------------------------------------------------------------ consensus_11444#2 ------------------------------------------------------------ consensus_11444#0 GCTCTACAAAAACGAGCAACTAGTGTATAAGTTAAATTGTTTAGCGTATGTATGTACAAA 629 consensus_11444#1 ------------------------------------------------- consensus_11444#2 ------------------------------------------------- consensus_11444#0 CTAACTGCTATATTCGTCTCAAAATATAACAACGTGAGACTGTCCAAAT 678 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||