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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11455#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1220 fasta sequence
[AAGAAAGCCACTGATTAACCGATATTTCCAGTTGACCAGAAAAGTATCAACCTTACATCTTATCATAATCATCATCATTTCTGGAATGTCTTACTCACCGATAAACTATTAGCAACAAAAGAAATGCCCAGATATTTCAGCAGCAACAAGTGGTAATCATACGAAAATTGTTTGTGTGTGGTATAATTCTAGCTTTACTGAAGAAA-GTATGATGTATAGTTTATAGTTTATCAGAGTGCCTTACTTTTACAGCTACAATTTAACCCATGACCTTTGGGCGCCATCCAGCAATGACATCCTCTTGCAGAGCTATAGTCTTGACAAATGAATCCATTGAAAAGATAGTCTTCATATATTTTTTCACATGTGAAAGTGAATCTGGAACAGACCAATTCTTATAGTGACCTAG-AGCTATCTCCATGTGATATAGTTTGGGGGCAAGAGAGAGATCAGCAGCAGATATTGTT-TCACCGTTAATAAATGGACCATTGTCTTTTAGATAGCTATCGAATGAAGTCAGCTCACTAAGCAGTGCCTGTTCTGTTCCATCATTCGGATCTTTGCTTTTAAGGAAACCAATA-AAGGTGGAA-AATATTTTT-GACCCGACTGAAGCCTTTTCTGGAGGAGTTGCCA-AGGATGGTTCAGGGTACTTCTCTTCTATCGCTTGTGTAATAACATCAGAATCAGCAACCCATTGTTCCTCAAGCTTGACAATAGGCACCTTACCTTC-TGGGCTAATT-TTCAGAAACCAATCAGGTTTGTTAGCGAGATCAACTAGTTTTATATCATACGGAAGATGCTTCTCCTCTATTGTCAACAACACTCTCTGTGTGAAAGGACAGTCGCCGAGGCGGTCGGGGACGGTGAGGGAGGCCTTGGCGCAGACCTCCAGCGGCTCCGCCGAGGCGCGAGCCGTGAGTAAGGCCGCGCGGCGCGGCGCCGAGCCGCGTGTCGCGGGGAGGAGGAGGAGGCGCCTGCCGCCGCGTCGGAACGTGGTGGCGAGGAGCGCCGTCGCCGAGGAGGAGCCGCCGCTCGTGGCGGTCGTAGCGGAGGTGGTGGTGCGGAGGAGGACGGCCATGCGTATCGGCAGCTCGCCGGAGCGGGCCGGCCTCCGGTGGTCGGGACGGGGACGGCGGTGAGGGGAGGCCGCAGAGGAGGAA-TTTTTTTG---AAAAAAAAAAAAAACTTATCTCCTCGGGCGAGGCGTGTATGGTGGTGGCTTC]
[-] EMBL AK059285 [AAGAAAGCCACTGATTAACCGATATTTCCAGTTGACCAGAAAAGTATCAACCTTACATCTTATCATAATCATCATCATTTCTGGAATGTCTTACTCACCGATAAACTATTAGCAACAAAAGAAATGCCCAGATATTTCAGCAGCAACAAGTGGTAATCATACGAAAATTGTTTGTGTGTGGTATAATTCTAGCTTTACTGAAGAAA GTATGATGTATAGTTTATAGTTTATCAGAGTGCCTTACTTTTACAGCTACAATTTAACCCATGACCTTTGGGCGCCATCCAGCAATGA ]
[-] EMBL AU070477 [ TATTTCCAGTTGNCCAGAAAAGTATCAACCTTACATCTTATCATAATCATCATCATTTCTGGAATGTCTTACTCACCGATAAACTATTAGCAACAAAAGAAATGCCCAGATATTTCAGCAGCAACAAGTGGTAATCATACGAAAATTGTTTGTGTGTGGTATAATTCTAGCTTTACTGAAGAAA GTATGATGTATAGTTTATAGTTTATCAGAGTGCCTTACTTTTACAGCTACAATTTAACCCATGACCTTTGGGCGCCATCCAGCAATGACATCCTCTTGCAGAGCTATAGTCTTGACAAATGAATCCATTGAAAAGATAGTCTTCATATATTTTTTCACATGTGAAAGTGAATCTGGAACAGACCAATTCTTATAGTGACCTAG AGCTATCTCCATGTGATATAGTTT ]
[+] EMBL AK070471 [ AGTATCAACCTTACATCTTATCATAATCATCATCATTTCTGGAATGTCTTACTCACCGATAAACTATTAGCAACAAAAGAAATGCCCAGATATTTCAGCAGCAACAAGTGGTAATCATACGAAAATTGTTTGTGTGTGGTATAATTCTAGCTTTACTGAAGAAA GTATGATGTATAGTTTATAGTTTATCAGAGTGCCTTACTTTTACAGCTACAATTTAACCCATGACCTTTGGGCGCCATCCAGCAATGACATCCTCTTGCAGAGCTATAGTCTTGACAAATGAATCCATTGAAAAGATAGTCTTCATATATTTTTTCACATGTGAAAGTGAATCTGGAACAGACCAATTCTTATAGTGACCTAG AGCTATCTCCATGTGATATAGTTTGGGGGCAAGAGAGAGATCAGCAGCAGATATTGTT TCACCGTTAATAAATGGACCATTGTCTTTTAGATAGCTATCGAATGAAGTCAGCTCACTAAGCAGTGCCTGTTCTGTTCCATCATTCGGATCTTTGCTTTTAAGGAAACCAATA AAGGTGGAA AATATTTTT GACCCGACTGAAGCCTTTTCTGGAGGAGTTGCCA AGGATGGTTCAGGGTACTTCTCTTCTATCGCTTGTGTAATAACATCAGAATCAGCAACCCATTGTTCCTCAAGCTTGACAATAGGCACCTTACCTTC TGGGCTAATT TTCAGAAACCAATCAGGTTTGTTAGCGAGATCAACTAGTTTTATATCATACGGAAGATGCTTCTCCTCTATTGTCAACAACACTCTCTGTGTGAAAGGACAGTCGCCGAGGCGGTCGGGGACGGTGAGGGAGGCCTTGGCGCAGACCTCCAGCGGCTCCGCCGAGGCGCGAGCCGTGAGTAAGGCCGCGCGGCGCGGCGCCGAGCCGCGTGTCGCGGGGAGGAGGAGGAGGCGCCTGCCGCCGCGTCGGAACGTGGTGGCGAGGAGCGCCGTCGCCGAGGAGGAGCCGCCGCTCGTGGCGGTCGTAGCGGAGGTGGTGGTGCGGAGGAGGACGGCCATGCGTATCGGCAGCTCGCCGGAGCGGGCCGGCCTCCGGTGGTCGGGACGGGGACGGCGGTGAGGGGAGGCCGCAGAGGAGGAA TTTTTTTG AAAAAAAAAAAAAACTTATCTCCTCGGGCGAGGCGTGTATGGTGGTGGCTTC]
[+] EMBL BI306573 [ AGTATCAACCTTACATCTTATCATAATCATCATCATTTCTGGAATGTCTTACTCACCGATAAACTATTAGCAACAAAAGAAATGCCCAGATATTTCAGCAGCAACAAGTGGTAATCATACGAAAATTGTTTGTGTGTGGTATAATTCTAGCTTTGCTGAAGAAA GTATGATGTATAGTTTATAGTTTATCAGAGTGCCTTACTTTTACAGCTACAATTTAACCCATGACCTTTGGGCGCCATCCAGCAATGACATCCTCTTGCAGAGCTATAGTCTTGACAAATGAATCCATTGAAAAGATAGTCTTCATATATTTTTTCACATGTGAAAGTGAATCTGGAACAGACCAATTCTTATAGTGACCTAG AGCTATCTCCATGTGATATAGTTTGGGGGCAAGAGAGAGATCAGCAGCAGATATTGTT TCACCGTTAATAAATGGACCATTGTCTTTTAGATAGCTATCGAATGAAGTCAGCTCACTAAGCAGTGCCTGTTCTGTTCCATCATT ]
[-] EMBL AK106013 [ TTACTCACCGATAAACTATTAGCAACAAAAGAAATGCCCAGATATTTCAGCAGCAACAAGTGGTAATCATACGAAAATTGTTTGTGTGTGGTATAATTCTAGCTTTACTGAAGAAA GTATGATGTATAGTTTATAGTTTATCAGAGTGCCTTACTTTTACAGCTACAATTTAACCCATGACCTTTGGGCGCCATCCAGCAATGACATCCTCTTGCAGAGCTATAGTCTTGACAAATGAATCCATTGAAAAGATAGTCTTCATATATTTTTTCACATGTGAAAGTGAATCTGGAACAGACCAATTCTTATAGTGACCTAG AGCTATCTCCATGTGATATAGTTTGGGGGCAAGAGAGAGATCAGCAGCAGATATTGTT TCACCGTTAATAAATGGACCATTGTCTTTTAGATAGCTATCGAATGAAGTCAGCTCACTAAGCAGTGCCTGTTCTGTTCCATCATTCGGATCTTTGCTTTTAAGGAAACCAATA AAGGTGGAA AATATTTTT GACCCGACTGAAGCCTTTTCTGGAGGAGTTGCCA AGGATGGTTCAGGGTACTTCTCTTCTATCGCTTGTGTAATAACATCAGAATCAGCAACCCATTGTTCCTCAAGCTTGACAATAGGCACCTTACCTTC TGGGCTAATT TTCAGAAACCAATCAGGTTTGTTAGCGAGATCAACTAGTTTTATATCATACGGAAGATGCTTCTCCTCTATTGTCAACAACACTCTCTGTGTGAAAGGACAGTCGCCGAGGCGGTCGGGGACGGTGAGGGAGGCCTTGGCGCAGACCTCCAGCGGCTCCGCCGAGGCGCGAGCCGTGAGTAAGGCCGCGCGGCGCGGCGCCGAGCCGCGTGTCGCGGGGAGGAGGAGGAGGCGCCTGCCGCCGCGTCGGAACGTGGTGGCGAGGAGCGCCGTCGCCGAGGAGGAGCCGCCGCTCGTGGCGGTCGTAGCGGAGGTGGTGGTGCGGAGGAGGACGGCCATGCGTATCGGCAGCTCGCCGGAGCGGGCCGGCCTCCGGTGGTCGGGACGGGGACGGCGGTGAGGGGAGGCCGCAGAGGAGGAATTTTTTTTGAAAAAAAAAAAAAAAAACTTATCTC ]
[-] EMBL CA767174 [ AAATTGTTTGTGTGTGGTATAATTCTAGCTTTACTGAAGAAAGGTATGATGTATAGTTTATAGTTTATCAGAGTGCCTTACTTTTACAGCTACAATTTAACCCATGACCTTTGGGCGCCATCCAGCAATGACATCCTCTTGCAGAGCTATAGTCTTGACAAATGAATCCATTGAAAAGATAGTCTTCATATATTTTTTCACATGTGAAAGTGAATCTGGAACAGACCAATTCTTATAGTGACCTAG AGCTATCTCCATGTGATATAGTTTGGGGGCAAGAGAGAGATCAGCAGCAGATATTGTT TCACCGTTAATAAATGGACCATTGTCTTTTAGATAGCTATCGAATGAAGTCAGCTCACTAAGCAGTGCCTGTTCTGTTCCATCATTCGGATCTTTGCTTTTAAGGAAACCAATA AAGGTGGAA AATATTTTT GACCCGACTGAAGCCTTTTCTGGAGGAGTTGCCA AGGATGGTTCAGGGTACTTCTCTTCTATCGCTTGTGTAATAACATCAGAATCAGCAACCCATTGTTCCTCAAGCTTGACAATAGGCACCTTACCTTC TGGGCTAATT TTCAGAAACCAATCAGGTTTGTTAGCGAGATCAACTAGT ]
[-] EMBL BI805752 [ ttTTTTTTTTG GGGGTATAATTCTAGCTTTACTGAAGAAA GTATGATGTATAG TTATAG TTATCAGAGTGCCTTACTTTTACAGCTACAATTTAACCCATGACCTTGGGGCGCCATCCAGCAATGACATCCTCTTGCAGAGCTATAGTCTTGACAAATGAATCCATTGAAAAGATAGTCTTCATATATTTNTTCACATGTGAAAGTGAATCTGGAACAGACCAATTCTTATAGTGACCTAGAAGCTATCTCCATGTGATATAGTTGGGGGGCAAGAGAGAGATCAG AGCAGATATTGTTATCACCGTTAATAAATGGACCATGGTCTTTTAGATAGCTATCGAATGAAGTCAGCTCACTAAGCAGTGCCTG TCTG TCCATCATTCGGATCTTGGCTTTTAAGGAAACCANTACANGGTGGAACAATATTTTTGGACCCGACTGAAGCCTTTTCTGGAGGAGTTGCCACAGGATGGTTCAGGGTACTTCTCTTCTATCGCTTGTGTAATAACATCAGAATCAGAAACCCANTGTACCTCAAGCTTGACAATAGGCACCTTACCTTCGTGGGCTAATTCTCCAGAAACCAAT ]
[+] EMBL CB965452 [ TTCTAGCTTTGCTGAAGAAA GTATGATGTATAGTTTATAGTTTATCAGAGTGCCTTACTTTTACAGCTACAATTTAACCCATGACCTTTGGGCGCCATCCAGCAATGACATCCTCTTGCAGAGCTATAGTCTTGACAAATGAATCCATTGAAAAGATAGTCTTCATATATTTTTTCACATGTGAAAGTGAATCTGGAACAGACCAATTCTTATAGTGACCTAG AGCTATCTCCATGTGATATAGTTTGGGGGCAAGAGAGAGATCAGCAGCAGATATTGTT TCACCGTTAATAAATGGACCATTGTCTTTTAGATAGCTATCGAATGAAGTCAGCTCACTAAGCAGTGCCTGTTCTGTTCCATCATTCGGATCTTTGCTTTTAAGGAAACCAATA AAGGTGGAA AATATTTTT GACCCGACTG ]
consensusID : consensus_11455#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 493 fasta sequence
[ATTAACGGATATTTCCAGTNGACCAGAAAAGTATCAACCNAACATCTTATCATAATCATCATCATTTNNGGAATGTCTTACTCACCGATAAACTATTAGCAACAAAAGAAATGCCCAGATATTTCAGCAGCAACAAGTGGTAATCATACGAAAATTGTTTGTGTGTGGTATAATTCTAGCTTTGCTGAAGAAAGTATGATGTATAGTTTATAGTTTATCAGAGTGCCTTACTTTTACAGCTACAATTTAACCCATGACCTTTGGGCGCCATCCAGCAATGACATCCTCTTGCAGAGCTATAGTCTTGACAAATGAATCCATTGAAAAGATAGTCTTCATATATTTTTTCACATGTGAAAGTGAATCTGGAACAGACCAATTCTTATAGTGACCTAGAGCTATCTCCATGTGATATAGTTNGGGGGCAAGAGAGAGATCAGCAGCAGATATTGTTTCACCGNTAATAAATGGACCATCGCTCGNGCCGAATTCG]
[-] EMBL BE228830 [ATTAACGGATATTTCCAGTNGACCAGAAAAGTATCAACCNAACATCTTATCATAATCATCATCATTTNNGGAATGTCTTACTCACCGATAAACTATTAGCAACAAAAGAAATGCCCAGATATTTCAGCAGCAACAAGTGGTAATCATACGAAAATTGTTTGTGTGTGGTATAATTCTAGCTTTGCTGAAGAAAGTATGATGTATAGTTTATAGTTTATCAGAGTGCCTTACTTTTACAGCTACAATTTAACCCATGACCTTTGGGCGCCATCCAGCAATGACATCCTCTTGCAGAGCTATAGTCTTGACAAATGAATCCATTGAAAAGATAGTCTTCATATATTTTTTCACATGTGAAAGTGAATCTGGAACAGACCAATTCTTATAGTGACCTAGAGCTATCTCCATGTGATATAGTTNGGGGGCAAGAGAGAGATCAGCAGCAGATATTGTTTCACCGNTAATAAATGGACCATCGCTCGNGCCGAATTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11455#0 AAGAAAGCCACTGATTAACCGATATTTCCAGTTGACCAGAAAAGTATCAACCTTACATCT 60
consensus_11455#1 -------------ATTAACGGATATTTCCAGTNGACCAGAAAAGTATCAACCNAACATCT 47
****** ************ ******************* ******
consensus_11455#0 TATCATAATCATCATCATTTCTGGAATGTCTTACTCACCGATAAACTATTAGCAACAAAA 120
consensus_11455#1 TATCATAATCATCATCATTTNNGGAATGTCTTACTCACCGATAAACTATTAGCAACAAAA 107
******************** **************************************
consensus_11455#0 GAAATGCCCAGATATTTCAGCAGCAACAAGTGGTAATCATACGAAAATTGTTTGTGTGTG 180
consensus_11455#1 GAAATGCCCAGATATTTCAGCAGCAACAAGTGGTAATCATACGAAAATTGTTTGTGTGTG 167
************************************************************
consensus_11455#0 GTATAATTCTAGCTTTACTGAAGAAAGTATGATGTATAGTTTATAGTTTATCAGAGTGCC 240
consensus_11455#1 GTATAATTCTAGCTTTGCTGAAGAAAGTATGATGTATAGTTTATAGTTTATCAGAGTGCC 227
**************** *******************************************
consensus_11455#0 TTACTTTTACAGCTACAATTTAACCCATGACCTTTGGGCGCCATCCAGCAATGACATCCT 300
consensus_11455#1 TTACTTTTACAGCTACAATTTAACCCATGACCTTTGGGCGCCATCCAGCAATGACATCCT 287
************************************************************
consensus_11455#0 CTTGCAGAGCTATAGTCTTGACAAATGAATCCATTGAAAAGATAGTCTTCATATATTTTT 360
consensus_11455#1 CTTGCAGAGCTATAGTCTTGACAAATGAATCCATTGAAAAGATAGTCTTCATATATTTTT 347
************************************************************
consensus_11455#0 TCACATGTGAAAGTGAATCTGGAACAGACCAATTCTTATAGTGACCTAGAGCTATCTCCA 420
consensus_11455#1 TCACATGTGAAAGTGAATCTGGAACAGACCAATTCTTATAGTGACCTAGAGCTATCTCCA 407
************************************************************
consensus_11455#0 TGTGATATAGTTTGGGGGCAAGAGAGAGATCAGCAGCAGATATTGTTTCACCGTTAATAA 480
consensus_11455#1 TGTGATATAGTTNGGGGGCAAGAGAGAGATCAGCAGCAGATATTGTTTCACCGNTAATAA 467
************ **************************************** ******
consensus_11455#0 ATGGACCATTGTCTTTTAGATAGCTATCGAATGAAGTCAGCTCACTAAGCAGTGCCTGTT 540
consensus_11455#1 ATGGACCATCGC---TCGNGCCGAATTCG------------------------------- 493
********* * * * ***
consensus_11455#0 CTGTTCCATCATTCGGATCTTTGCTTTTAAGGAAACCAATAAAGGTGGAAAATATTTTTG 600
consensus_11455#1 ------------------------------------------------------------
consensus_11455#0 ACCCGACTGAAGCCTTTTCTGGAGGAGTTGCCAAGGATGGTTCAGGGTACTTCTCTTCTA 660
consensus_11455#1 ------------------------------------------------------------
consensus_11455#0 TCGCTTGTGTAATAACATCAGAATCAGCAACCCATTGTTCCTCAAGCTTGACAATAGGCA 720
consensus_11455#1 ------------------------------------------------------------
consensus_11455#0 CCTTACCTTCTGGGCTAATTTTCAGAAACCAATCAGGTTTGTTAGCGAGATCAACTAGTT 780
consensus_11455#1 ------------------------------------------------------------
consensus_11455#0 TTATATCATACGGAAGATGCTTCTCCTCTATTGTCAACAACACTCTCTGTGTGAAAGGAC 840
consensus_11455#1 ------------------------------------------------------------
consensus_11455#0 AGTCGCCGAGGCGGTCGGGGACGGTGAGGGAGGCCTTGGCGCAGACCTCCAGCGGCTCCG 900
consensus_11455#1 ------------------------------------------------------------
consensus_11455#0 CCGAGGCGCGAGCCGTGAGTAAGGCCGCGCGGCGCGGCGCCGAGCCGCGTGTCGCGGGGA 960
consensus_11455#1 ------------------------------------------------------------
consensus_11455#0 GGAGGAGGAGGCGCCTGCCGCCGCGTCGGAACGTGGTGGCGAGGAGCGCCGTCGCCGAGG 1020
consensus_11455#1 ------------------------------------------------------------
consensus_11455#0 AGGAGCCGCCGCTCGTGGCGGTCGTAGCGGAGGTGGTGGTGCGGAGGAGGACGGCCATGC 1080
consensus_11455#1 ------------------------------------------------------------
consensus_11455#0 GTATCGGCAGCTCGCCGGAGCGGGCCGGCCTCCGGTGGTCGGGACGGGGACGGCGGTGAG 1140
consensus_11455#1 ------------------------------------------------------------
consensus_11455#0 GGGAGGCCGCAGAGGAGGAATTTTTTTGAAAAAAAAAAAAAACTTATCTCCTCGGGCGAG 1200
consensus_11455#1 ------------------------------------------------------------
consensus_11455#0 GCGTGTATGGTGGTGGCTTC 1220
consensus_11455#1 --------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||