cluster # 11456

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Oryza sativa
cluster # 11456 cluster # 11456 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11456#0 length = 636 sequences # 8

consensus_11456#1 length = 425 sequences # 1

consensusID : consensus_11456#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 636
fasta sequence

                              [ACCACACTTAAATTTGCCTTATCTATCTACTGAGCGGCCGAGCCCATCTCTCTCGCAACTTCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCAATCGAGGAGGCGGATGCAGGCGGCAAGGCGATGCCACTACTCTCGGAGGCGAGCCACGGGGTGGCTGGATCCGGCGTCGGCGGCAGGCGGGGTGGCCGGATCCGGCATCAGCAGCAGACGGGGGTGGCTGGATCCGGCGTCGGCAGCAGGCGGGGTGGCCGGATCCGACGTCAGCATCTGTTCCCGCGGCGGATCCGCGTTGACAGCGGGAATGGTACAGCGGCAGCG-T-AGGTGGGCGCCCTCCTCAGCAAGCTACCGTGGCAGCGGCGGGCGCCATCCCCGGTGAGCTACGATAGCAGCGGGGCTCGCACGTGCATGGGTGGATCCGGTGACGACA-GGCGCCATCCTCGGTGAGCTACAGTGGCGGGCATGCAATGGCGAAGTTCTCAAATCAGTGATTTGTATTATATGTTTGTGATTCTGTTCTTGCCTTGTGATGGTTGATGTTGATTCTTGTGGTTCTGTTGTTGATCTTCAATCTAGATGTGTTGATTGTTTGGGGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CA754466             [ACCACACTTAAATTTGCCTTATCTATCTACTGAGCGGCCGAGCCCATCTCTCTCGCAACTTCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCAATCGAGGAGGCGGATGCAGGCGGCAAGGCGATGCCACTACTCTCGGAGGCGAGCCACGGGGTGGCTGGATCCGGCGTCGGCGGCAGGCGGGGTGGCCGGATCCGGCATCAGCAGCAGACGGGGGTGGCTGGATCCGGCGTCGGCAGCAGGCGGGGTGGCCGGATCCGACGTCAGCATCTGTTCCCGCGGCGGATCCGCGTTGACAGCGGGAATGGTACAGCGGCAGCG T AGGTGGGCGCCCTCCTCAGCAAGCTACCGTGGCAGCGGCGGGCGCCATCCCCGGTGAGCTACGATAGCAGCGGGGCTCGCACGTGCATGGGTGGATCCGGTGACGACA GGCGCCATCCTCGGTGAGCTACAGTGGCGGGCATGCAATGGCGAAGTTCTCAAATCAGTGATTTGTATTATATGTTTGTGATTCTGTTCTTGCCTTGTGATGGTTGATGTTGATTCTTGTGGTTCTGTTGTTGATCTTCAATCTAGATGTGTTGATTGTTTGGGG                                      ]
[+] EMBL AK058995             [                                            CATCTCTCTCGCAACTTCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCAATCGAGGAGGCGGATGCAGGCGGCAAGGCGATGCCACTACTCTCGGAGGCGAGCCACGGGGTGGCTGGATCCGGCGTCGGCGGCAGGCGGGGTGGCCGGATCCGGCATCAGCAGCAGACGGGGGTGGCTGGATCCGGCGTCGGCAGCAGGCGGGGTGGCCGGATCCGACGTCAGCATCTGTTCCCGCGGCGGATCCGCGTTGACAGCGGGAATGGTACAGCGGCAGCG T AGGTGGGCGCCCTCCTCAGCAAGCTACCGTGGCAGCGGCGGGCGCCATCCCCGGTGAGCTACGATAGCAGCGGGGCTCGCACGTGCATGGGTGGATCCGGTGACGACA GGCGCCATCCTCGGTGAGCTACAGTGGCGGGCATGCAATGGCGAAGTTCTCAAATCAGTGATTTGTATTATATGTTTGTGATTCTGTTCTTGCCTTGTGATGGTTGATGTTGATTCTTGTGGTTCTGTTGTTGATCTTCAATCTAGATGTGTTGATTG                                             ]
[+] EMBL C91596               [                                                                    catnCTCTCTCTCTCTCTCTCTCTCCCAATCGAGGAGGCGGATGCAGGCGGCAAGGCGATGCCACTACTCTCGGAGGCGAGCCACGGGGTGGCTGGATCCGGCGTCGGCGGCAGGCGGGGTGGCCGGATCCGGCATCAGCAGCAGACGGGGGTGGCTGGATCCGGCGTCGGCAGCAGGCGGGGTGGCCGGATCCGACGTCAGCATCTGTTCCCGCGGCGGATCCGCGTTGACAGCGGGAATGGTACAGCGGCAGCG TNAGGTGGGCGCCCTCCTCAGCAAGCTACCGTGGCAGCGGCGGGCGCCATCCCCGGTGAGCTACGATAGCAGCGGGGCTCGCACGTGCATGGGTGGATCCGGTGACGACAGGGCGCCATCCTCGGTGAGCTACAGTGGCGGGCATGCAATGGCGAA TTCTCAAATCAGTGATTTGTATTATATGTTTG                                                                                                                             ]
[+] EMBL AU070719             [                                                                          CTCTCTCTCTCTCTCTCTCCCAATCGAGGAGGCGGATGCAGGCGGCAAGGCGATGCCACTACTCTCGGAGGCGAGCCACGGGGTGGCTGGATCCGGCGTCGGCGGCAGGCGGGGTGGCCGGATCCGGCATCAGCAGCAGACGGGGGTGGCTGGATCCGGCGTCGGCAGCAGGCGGGGTGGCCGGATCCGACGTCAGCATCTGTTCCCGCGGCGGATCCGCGTTGACAGCGGGAATGGTACAGCGGCA CGTT AGGTGGGCGCCCTCCTCAGCAAGCTACCGTGGCANCGGCGGGCGCCATCCCCGGTGAGCTACGATAGCAGCGGGGCTCGCACGTGCATGGGTGG                                                                                                                                                                                                                          ]
[+] EMBL OSS15579A            [                                                                             TCTCTCTCTCTCTCTCCCAATCGAGGAGGCGGATGCAGGCGGCAAGGCGATGCCACTACTCTCGGAGGCGAGCCACGGGGTGGCTGGATCCGGCGTCGGCGGCAGGCGGGGTGGCCGGATCCGGCATCAGCAGCAGACGGGGGTGGCTGGATCCGGCGTCGGCAGCAGGCGGGGTGGCCGGATCCGACGTCAGCATCTGTTCCCGCGGCGGATCCGCGTTGACAGCGGGAATGGTACAGCGGCANCT N AGGTNGGCGCCCTCCTCAGCAAGCTACCGTGGCAGCGGCGGGCGCCATCCCCGGTGAGCTACGATAGCAGCGGG                                                                                                                                                                                                                                              ]
[+] EMBL AU070437             [                                                                             TCTCTCTCTCTCTCTCCCAATCGAGGAGGCGGATGCAGGCGGCAAGGCGNTGNCACTACTCTCGGAGGCGAGCCACGGGGTGGCTNGATCCGGCGTCGGCGGCAGGCGGGGTGGCCGTATCCGGCATCAGCAGCAGACGGGGGTGGCTGGATCCGGCGTCGGCAGNAGGCGGGGTGGCC                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL C74667               [                                                                                                                                                       ACGGGGTGGCTGGATCCGGCGTCGGCGGCAGGCGGGGTGGCCGGATCCGGCATCAGCAGCAGACGGGGGTGGCTGGATCCGGCGTCGGCAGCAGGCGGGGTGGCCGGATCCGACGTCAGCATCTGTTCCCGCGGCGGATCCGCGTTGACAGCGGGAATGGTACAGCGGCA CT N AGGTGGGCGCCCTCCTCAGCAAGCTACCGTGGCAGCGGCGGGCGCCATCCCCGGTGAGCTACGATAGCAGCGGGGCTCGCACGTGCATNGGTGGATCCGGTGACGACA GGCGCCATCCTCGGTGAGCTACAGTGGCGGGCATGCAATGGCGAAGTTCTCAAATCAGTn                                                                                                                                               ]
[+] EMBL AU088649             [                                                                                                                                                                                                  GATCCNGCATCAGCAGCAGACGGGGNTGGCTGGATCCGGCGTCGGCAGCAGGCGGGGTGNCCGGATCCGACGTCAGCATCTGTTCCCGCGGCGGATCCGCGTTGACAGCGGGAATGGTACAGCGGCAGCG T AGGTGGGCGCCCTCCTCAGCAAGCTACCGTGGCAGCGGCGGGCGCCATCCCCGGTGAGCTACGATAGCAGCGGGGCTCGCACGTGCATGGGTGGATCCGGTGACGACA GGCGCCATCCTCGGTGAGCTACAGTGGCGGGCATGCAATGGCGAAGTTCTCAAATCAGTGATTTGTATTATATGTTTGTGATTCTGTTCTTGCCTTGTGATGGTTGATGTTGATTCTTGTGGTTCTGTTGTTGATCTTCAATCTAGATGTGTTGATTGTTTGGGGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_11456#0
ACCACACTTAAATTTGCCTTATCTATCTACTGAGCGGCCGAGCCCATCTCTCTCGCAACT
TCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCAATCGAGGAGGCGGATGCAGGCGGC
AAGGCGATGCCACTACTCTCGGAGGCGAGCCACGGGGTGGCTGGATCCGGCGTCGGCGGC
AGGCGGGGTGGCCGGATCCGGCATCAGCAGCAGACGGGGGTGGCTGGATCCGGCGTCGGC
AGCAGGCGGGGTGGCCGGATCCGACGTCAGCATCTGTTCCCGCGGCGGATCCGCGTTGAC
AGCGGGAATGGTACAGCGGCAGCGTAGGTGGGCGCCCTCCTCAGCAAGCTACCGTGGCAG
CGGCGGGCGCCATCCCCGGTGAGCTACGATAGCAGCGGGGCTCGCACGTGCATGGGTGGA
TCCGGTGACGACAGGCGCCATCCTCGGTGAGCTACAGTGGCGGGCATGCAATGGCGAAGT
TCTCAAATCAGTGATTTGTATTATATGTTTGTGATTCTGTTCTTGCCTTGTGATGGTTGA
TGTTGATTCTTGTGGTTCTGTTGTTGATCTTCAATCTAGATGTGTTGATTGTTTGGGGAT
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_11456#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 425
fasta sequence

                              [CCGTCAAGCATCTTGTGTCCCCGCNGGCGGATCCGNCGTTTGACAAGCCGGGAATTGGTTACAAGCCGGCATGCGTAAGGTGGGCCGCCCTCCTTCAGCAAAGCTTACCGTTGGCANGCGCGNGGCGCCATCCCCGGTGAGCTACGATAGCANCGGGGCTCGCACGTGCATGGGTGGATCCGGTGACGACAGGCGCCATCCTCGGTGAGCTACAGTGGCGGGCATGCAATGGCGAAGTTCTCAAATCAGTGATTTGTATTATATGTTTGTGATTCTGTTCTTGCCTTGTGATGGTTGATGTTGATTCTTGTGGTTCTGTTGTTGATCTTCAATCTAGATGTGTTGATTGTTTGGGGATTATTCATTGTATTTCATGTATGCATGAGTTTGGGGGTTTGGAGCTTGGGATCTAAAAAAAAAAAAAA]

[+] EMBL AU162042             [CCGTCAAGCATCTTGTGTCCCCGCNGGCGGATCCGNCGTTTGACAAGCCGGGAATTGGTTACAAGCCGGCATGCGTAAGGTGGGCCGCCCTCCTTCAGCAAAGCTTACCGTTGGCANGCGCGNGGCGCCATCCCCGGTGAGCTACGATAGCANCGGGGCTCGCACGTGCATGGGTGGATCCGGTGACGACAGGCGCCATCCTCGGTGAGCTACAGTGGCGGGCATGCAATGGCGAAGTTCTCAAATCAGTGATTTGTATTATATGTTTGTGATTCTGTTCTTGCCTTGTGATGGTTGATGTTGATTCTTGTGGTTCTGTTGTTGATCTTCAATCTAGATGTGTTGATTGTTTGGGGATTATTCATTGTATTTCATGTATGCATGAGTTTGGGGGTTTGGAGCTTGGGATCTAAAAAAAAAAAAAA]




>consensus_11456#1
CCGTCAAGCATCTTGTGTCCCCGCNGGCGGATCCGNCGTTTGACAAGCCGGGAATTGGTT
ACAAGCCGGCATGCGTAAGGTGGGCCGCCCTCCTTCAGCAAAGCTTACCGTTGGCANGCG
CGNGGCGCCATCCCCGGTGAGCTACGATAGCANCGGGGCTCGCACGTGCATGGGTGGATC
CGGTGACGACAGGCGCCATCCTCGGTGAGCTACAGTGGCGGGCATGCAATGGCGAAGTTC
TCAAATCAGTGATTTGTATTATATGTTTGTGATTCTGTTCTTGCCTTGTGATGGTTGATG
TTGATTCTTGTGGTTCTGTTGTTGATCTTCAATCTAGATGTGTTGATTGTTTGGGGATTA
TTCATTGTATTTCATGTATGCATGAGTTTGGGGGTTTGGAGCTTGGGATCTAAAAAAAAA
AAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11456#0      ACCACACTTAAATTTGCCTTATCTATCTACTGAGCGGCCGAGCCCATCTCTCTCGCAACT 60
consensus_11456#1      ------------------------------------------------------------
                                                                                   

consensus_11456#0      TCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCAATCGAGGAGGCGGATGCAGGCGGC 120
consensus_11456#1      ------------------------------------------------------------
                                                                                   

consensus_11456#0      AAGGCGATGCCACTACTCTCGGAGGCGAGCCACGGGGTGGCTGGATCCGGCGTCGGCGGC 180
consensus_11456#1      ------------------------------------------------------------
                                                                                   

consensus_11456#0      AGGCGGGGTGGCCGGATCCGGCATCAGCAGCAGACGGGGGTGGCTGGATCCGGCGTCGGC 240
consensus_11456#1      ------------------------------------------------------------
                                                                                   

consensus_11456#0      AGCAGGCGGGGTGGCCGGATCCGACGT-CAGCATCTGTTCCCGCGG-CGGATCCGCG--T 296
consensus_11456#1      --------------------CCGTCAAGCATCTTGTGTCCCCGCNGGCGGATCCGNCGTT 40
                                           *** *   ** * * *** ***** * ********    *

consensus_11456#0      TGACAG--CGGGAATGG--TACAG--CGGCA-GCGTA-GGTGGGC-GCCCTCCT-CAGCA 346
consensus_11456#1      TGACAAGCCGGGAATTGGTTACAAGCCGGCATGCGTAAGGTGGGCCGCCCTCCTTCAGCA 100
                       *****   ******* *  ****   ***** ***** ******* ******** *****

consensus_11456#0      AG--CTACCGT-GGCAGCGGCGGG-CGCCATCCCCGGTGAGCTACGATAGCAGCGGGGCT 402
consensus_11456#1      AAGCTTACCGTTGGCANGCGCGNGGCGCCATCCCCGGTGAGCTACGATAGCANCGGGGCT 160
                       *    ****** ****   *** * *************************** *******

consensus_11456#0      CGCACGTGCATGGGTGGATCCGGTGACGACAGGCGCCATCCTCGGTGAGCTACAGTGGCG 462
consensus_11456#1      CGCACGTGCATGGGTGGATCCGGTGACGACAGGCGCCATCCTCGGTGAGCTACAGTGGCG 220
                       ************************************************************

consensus_11456#0      GGCATGCAATGGCGAAGTTCTCAAATCAGTGATTTGTATTATATGTTTGTGATTCTGTTC 522
consensus_11456#1      GGCATGCAATGGCGAAGTTCTCAAATCAGTGATTTGTATTATATGTTTGTGATTCTGTTC 280
                       ************************************************************

consensus_11456#0      TTGCCTTGTGATGGTTGATGTTGATTCTTGTGGTTCTGTTGTTGATCTTCAATCTAGATG 582
consensus_11456#1      TTGCCTTGTGATGGTTGATGTTGATTCTTGTGGTTCTGTTGTTGATCTTCAATCTAGATG 340
                       ************************************************************

consensus_11456#0      TGTTGATTGTTTGGGGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------ 636
consensus_11456#1      TGTTGATTGTTTGGGGATTATTCATTGTATTTCATGTATGCATGAGTTTGGGGGTTTGGA 400
                       ********************   *    *    *   *   *  *               

consensus_11456#0      -------------------------
consensus_11456#1      GCTTGGGATCTAAAAAAAAAAAAAA 425