These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11459#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1791 fasta sequence [CACGCACCCGTGGCCGGAGAAGAAGACGCCGCCATGGACGCCGGCGAGTGCTCCAGCTCCCAGCCCTGCGCGTCCTCCTCGCCGGACGCCGCCGGTGGCGTTTGGGCCAAGCTAGTGCCCTCCGATTCCGCGTTCCCGGAGGTGGAGCTGGCCGAGGACGACGCCGTGGTGTGCTCCCGGGTCACCCCGGACGGCGGCGGGGAGGTGGCCGCGTGGTGCGAGATTAGGCGCGGCGGCGGCGATGGCGACGCGTCGTCGGCGACGATTCGGAATCTGAGCTCGGATGCAATTATTGTCGATGGAAGAGTGATCCAGCAAGAAGCAGTTGACATCAAACCGGGGAGTGAAATTGTTTCAGGACCCCAGAAAGATGGGCATCTGTTGTACACCTTTGATATAACAGGCCTGAATGACCAGGACAAAACTAATATCAAGATTGTGCTGGATATTGAGAATGCAAAGTGCAGCATATGCTTAAATTTGTGGCATGATGTTGTTACTGTTGCTCCATGCCTCCACAACTTCTGCAACGGTTGCTTCTCTGAGTGGTTAAGAAGGTCTTCAGCTAATTCGCGTGATAAAAGTCAGAGTGCTGCCTGTCCACAATGTAGGACGGCAGTGCAATCAGTTGGTAGGAATCACTTCCTACATAGTATTGAAGAGGCTATACTGCAAGCTTTTTCATCGCTACAGCGGTCTGATGAGGAGATTGCATTGTTGGAGTCATATGCCTCGGTCAAGACAAATATTGCATGGCATGCATTCATCCCTTTTCCATGGTCTTATGCTGGTGCGATGATTCTTAGATCCACCATGGGGATAAACATCTGTCAGAGGGAGGTTTTGGGGAAACAGAAAATCCAGTCAAGGAAGCGCCGTTTGCCACGTTCAAATGATGAAGCTAACCATACTAACCATGCTGATTTTCTATGCCCTCAATGTGGTGCTGAATTTGGTGGATTTAGGTGCAGTCCAGGTGCTCCACACTTGCCGTGTAATGGATGTGGAGGAATGATGCCAGCCAGACCTGACACCAGTATACCACAAAAATGTTTGGGATGTGATAGGGCATTTTGTGGAGCTTATTGGTGTTCCCAAGGAGTGAATTCAAGTCAGCATAATCCAATCTGTGATCAGGAAACTTTCAAGATGATCTCTCAGCGCCATATCTCTAGTGTTCCTGACACAATACATGGAGGCAATCAATACGAGAAAGATATTACAGAAAGATGTATACAGCAATCAGGCAAAGCATTGCAAGCTATAATCTCAGAGTGGATAGTGAAGTTTGACAATAAGGAGCTTGATCGCTCAAGGCTGCAGCTGAACCATGTTGATGCAATTACTTCTAGGACATACGTCTGCAACCAATGCTACAGCAAGTTCATCGATTTCCTGCTCTACTGGTTCCGTGTATCAATGCCAAGAAATCTCCCTCCACCTGATGCTGCTAACAGGGAGAGCTGCTGGTATGGTTTCATGTGCCGAACCCAGCACCACCGGCCTGACCATGCTAAGAAGCTCAACCATGTCTGTCGTCCAACAAGAGGCAACCCCTAGCCTGCCTCGTTCTCTGAAAAAAATCATCTATTTTCAGTGTTCAACAGCAGCATTGTACAGCAAAGAGCAAGTGCCATAGGCTCTGGTTTCTCAGTGTTTAACAGCTCTGTTTGATTAGTAGGAATGATTGTCAGGTACATCAACCAGTTTCAAATGCCTAAACTGAT--AACCTGTTTATCTTAAAAACTCCTATTGCAACCTTCCATACTTATGTTTTTGCAATGCAACCTC] [+] EMBL AK064320 [CACGCACCCGTGGCCGGAGAAGAAGACGCCGCCATGGACGCCGGCGAGTGCTCCAGCTCCCAGCCCTGCGCGTCCTCCTCGCCGGACGCCGCCGGTGGCGTTTGGGCCAAGCTAGTGCCCTCCGATTCCGCGTTCCCGGAGGTGGAGCTGGCCGAGGACGACGCCGTGGTGTGCTCCCGGGTCACCCCGGACGGCGGCGGGGAGGTGGCCGCGTGGTGCGAGATTAGGCGCGGCGGCGGCGATGGCGACGCGTCGTCGGCGACGATTCGGAATCTGAGCTCGGATGCAATTATTGTCGATGGAAGAGTGATCCAGCAAGAAGCAGTTGACATCAAACCGGGGAGTGAAATTGTTTCAGGACCCCAGAAAGATGGGCATCTGTTGTACACCTTTGATATAACAGGCCTGAATGACCAGGACAAAACTAATATCAAGATTGTGCTGGATATTGAGAATGCAAAGTGCAGCATATGCTTAAATTTGTGGCATGATGTTGTTACTGTTGCTCCATGCCTCCACAACTTCTGCAACGGTTGCTTCTCTGAGTGGTTAAGAAGGTCTTCAGCTAATTCGCGTGATAAAAGTCAGAGTGCTGCCTGTCCACAATGTAGGACGGCAGTGCAATCAGTTGGTAGGAATCACTTCCTACATAGTATTGAAGAGGCTATACTGCAAGCTTTTTCATCGCTACAGCGGTCTGATGAGGAGATTGCATTGTTGGAGTCATATGCCTCGGTCAAGACAAATATTGCATGGCATGCATTCATCCCTTTTCCATGGTCTTATGCTGGTGCGATGATTCTTAGATCCACCATGGGGATAAACATCTGTCAGAGGGAGGTTTTGGGGAAACAGAAAATCCAGTCAAGGAAGCGCCGTTTGCCACGTTCAAATGATGAAGCTAACCATACTAACCATGCTGATTTTCTATGCCCTCAATGTGGTGCTGAATTTGGTGGATTTAGGTGCAGTCCAGGTGCTCCACACTTGCCGTGTAATGGATGTGGAGGAATGATGCCAGCCAGACCTGACACCAGTATACCACAAAAATGTTTGGGATGTGATAGGGCATTTTGTGGAGCTTATTGGTGTTCCCAAGGAGTGAATTCAAGTCAGCATAATCCAATCTGTGATCAGGAAACTTTCAAGATGATCTCTCAGCGCCATATCTCTAGTGTTCCTGACACAATACATGGAGGCAATCAATACGAGAAAGATATTACAGAAAGATGTATACAGCAATCAGGCAAAGCATTGCAAGCTATAATCTCAGAGTGGATAGTGAAGTTTGACAATAAGGAGCTTGATCGCTCAAGGCTGCAGCTGAACCATGTTGATGCAATTACTTCTAGGACATACGTCTGCAACCAATGCTACAGCAAGTTCATCGATTTCCTGCTCTACTGGTTCCGTGTATCAATGCCAAGAAATCTCCTTCCACCTGATGCTGCTAACAGGGAGAGCTGCTGGTATGGTTTCATGTGCCGAACCCAGCACCACCGGCCTGACCATGCTAAGAAGCTCAACCATGTCTGTCGTCCAACAAGAGGCAACCCCTAGCCTGCCTCGTTCTCTGAAAAAAATCATCTATTTTCAGTGTTCAACAGCAGCATTGTACAGCAAAGAGCAAGTGCCATAGGCTCTGGTTTCTCAGTGTTTAACAGCTCTGTTTGATTAGTAGGAATGATTGTCAGGTACATCAACCAGTTTCAAATGCCTAAACTGATACAACCTGTTTATCTTAATCTCTCCTATTGCAACCTTCCATACTTATGTTTTTGCAATGCAACCTC] [+] EMBL CF331226 [ AAGTTCATCGATTTCCTGCTCTACTGGTTCCGTGTATCAATGCCAAGAAATCTCCCTCCACCTGATGCTGCTAACAGGGAGAGCTGCTGGTATGGTTTCATGTGCCGAACCCAGCACCACCGGCCTGACCATGCTAAGAAGCTCAACCATGTCTGTCGTCCAACAAGAGGCAACCCCTAGCCTGCCTCGTTCTCTGAAAAAAATCATCTATTTTCAGTGTTCAACAGCAGCATTGTACAGCAAAGAGCAAGTGCCATAGGCTCTGGTTTCTCAGTGTTTAACAGCTCTGTTTGATTAGTAGGAATGATTGTCAGGTACATCAACCAGTTTCAAATGCCTAAACTGAT AACCTGTTTATCTTAAAAA ] [-] EMBL CF331227 [ AGTTCATCGATTTCCTGCTCTACTGGTTCCGTGTATCAATGCCAAGAAATCTCCCTCCACCTGATGCTGCTAACAGGGAGAGCTGCTGGTATGGTTTCATGTGCCGAACCCAGCACCACCGGCCTGACCATGCTAAGAAGCTCAACCATGTCTGTCGTCCAACAAGAGGCAACCCCTAGCCTGCCTCGTTCTCTGAAAAAAATCATCTATTTTCAGTGTTCAACAGCAGCATTGTACAGCAAAGAGCAAGTGCCATAGGCTCTGGTTTCTCAGTGTTTAACAGCTCTGTTTGATTAGTAGGAATGATTGTCAGGTACATCAACCAGTTTCAAATGCCTAAACTGAT AACCTGTTTATCTTAAAAAa ] consensusID : consensus_11459#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1662 fasta sequence [TCCTTCCCTTGCACGCCTCCACGCACCCGTGGCCGGAGAAGAAGACGCCGCCATGGACGCCGGCGAGTGCTCCAGCTCCCAGCCCTGCGCGTCCTCCTCGCCGGACGCCGCCGGTGGCGTTTGGGCCAAGCTAGTGCCCTCCGATTCCGCGTTCCCGGAGGTGGAGCTGGCCGAGGACGACGCCGTGGTGTGCTCCCGGGTCACCCCGGACGGCGGCGGGGAGGTGGCCGCGTGGTGCGAGATTAGGCGCGGCGGCGGCGATGGCGACGCGTCGTCGGCGACGATTCGGAATCTGAGCTCGGATGCAATTATTGTCGATGGAAGAGTGATCCAGCAAGAAGCAGTTGACATCAAACCGGGGAGTGAAATTGTTTCAGGACCCCAGAAAGATGGGCATCTGTTGTACACCTTTGATATAACAGGCCTGAATGACCAGGACAAAACTAATATCAAGATTGTGCTGGATATTGAGAATGCAAAGTGCAGCATATGCTTAAATTTGTGGCATGATGTTGTTACTGTTGCTCCATGCCTCCACAACTTCTGCAACGGTTGCTTCTCTGAGTGGTTAAGAAGGTCTTCAGCTAATTCGCGTGATAAAAGTCAGAGTGCTGCCTGTCCACAATGTAGGACGGCAGTGCAATCAGTTGGTAGGAATCACTTCCTACATAATATTGAAGAGGCTATACTGCAAGCTTTTTCATCGCTACAGCGGTCTGATGAGGAGATTGCATTGTTGGAGTCATATGCCTCGGTCAAGACAAATATTGTTTTGGGGAAACAGAAAATCCAGTCAAGGAAGCGCCGTTTGCCACGTTCAAATGATGAAGCTAACCATACTAACCATGCTGATTTTCTATGCCCTCAATGTGGTGCTGAATTTGGTGGATTTAGGTGCAGTCCAGGTGCTCCACACTTGCCGTGTAATGGATGTGGAGGAATGATGCCAGCCAGACCTGACACCAGTATACCACAAAAATGTTTGGGATGTGATAGGGCATTTTGTGGAGCTTATTGGTGTTCCCAAGGAGTGAATTCAAGTCAGCATAATCCAATCTGTGATCAGGAAACTTTCAAGATGATCTCTCAGCGCCATATCTCTAGTGTTCCTGACACAGTACATGGAGGCAATCAATACGAGAAAGATATTACAGAAAGATGTATACAGCAATCAGGCAAAGCATTGCAAGCTATAATCTCAGAGTGGATAGTGAAGTTTGACAATAAGGAGCTTGATCGCTCAAGGCTGCAGCTGAACCATGTTGATGCAATTACTTCTAGGACATACGTCTGCAACCAATGCTACAGCAAGTTCATCGATTTCCTGCTCTACTGGTTCCGTGTATCAATGCCAAGAAATCTCCTTCCACCTGATGCTGCTAACAGGGAGAGCTGCTGGTATGGTTTCATGTGCCGAACCCAGCACCACCGGCCTGACCATGCTAAGAAGCTCAACCATGTCTGTCGTCCAACAAGAGGCAACCCCTAGCCTGCCTCGTTCTCTGAAAAAAATCATCTATTTTCAGTGTTCAACAGCAGCATTGTACAGCAAAGAGCAAGTGCCATAGGCTCTGGTTTCTCAGTGTTTAACAGCTCTGTTTGATTAGTAGGAATGATTGTCAGGTACATCAACCAGTTTCAAATGCCTAAACTGATACAACC] [+] EMBL AK101592 [TCCTTCCCTTGCACGCCTCCACGCACCCGTGGCCGGAGAAGAAGACGCCGCCATGGACGCCGGCGAGTGCTCCAGCTCCCAGCCCTGCGCGTCCTCCTCGCCGGACGCCGCCGGTGGCGTTTGGGCCAAGCTAGTGCCCTCCGATTCCGCGTTCCCGGAGGTGGAGCTGGCCGAGGACGACGCCGTGGTGTGCTCCCGGGTCACCCCGGACGGCGGCGGGGAGGTGGCCGCGTGGTGCGAGATTAGGCGCGGCGGCGGCGATGGCGACGCGTCGTCGGCGACGATTCGGAATCTGAGCTCGGATGCAATTATTGTCGATGGAAGAGTGATCCAGCAAGAAGCAGTTGACATCAAACCGGGGAGTGAAATTGTTTCAGGACCCCAGAAAGATGGGCATCTGTTGTACACCTTTGATATAACAGGCCTGAATGACCAGGACAAAACTAATATCAAGATTGTGCTGGATATTGAGAATGCAAAGTGCAGCATATGCTTAAATTTGTGGCATGATGTTGTTACTGTTGCTCCATGCCTCCACAACTTCTGCAACGGTTGCTTCTCTGAGTGGTTAAGAAGGTCTTCAGCTAATTCGCGTGATAAAAGTCAGAGTGCTGCCTGTCCACAATGTAGGACGGCAGTGCAATCAGTTGGTAGGAATCACTTCCTACATAATATTGAAGAGGCTATACTGCAAGCTTTTTCATCGCTACAGCGGTCTGATGAGGAGATTGCATTGTTGGAGTCATATGCCTCGGTCAAGACAAATATTGTTTTGGGGAAACAGAAAATCCAGTCAAGGAAGCGCCGTTTGCCACGTTCAAATGATGAAGCTAACCATACTAACCATGCTGATTTTCTATGCCCTCAATGTGGTGCTGAATTTGGTGGATTTAGGTGCAGTCCAGGTGCTCCACACTTGCCGTGTAATGGATGTGGAGGAATGATGCCAGCCAGACCTGACACCAGTATACCACAAAAATGTTTGGGATGTGATAGGGCATTTTGTGGAGCTTATTGGTGTTCCCAAGGAGTGAATTCAAGTCAGCATAATCCAATCTGTGATCAGGAAACTTTCAAGATGATCTCTCAGCGCCATATCTCTAGTGTTCCTGACACAGTACATGGAGGCAATCAATACGAGAAAGATATTACAGAAAGATGTATACAGCAATCAGGCAAAGCATTGCAAGCTATAATCTCAGAGTGGATAGTGAAGTTTGACAATAAGGAGCTTGATCGCTCAAGGCTGCAGCTGAACCATGTTGATGCAATTACTTCTAGGACATACGTCTGCAACCAATGCTACAGCAAGTTCATCGATTTCCTGCTCTACTGGTTCCGTGTATCAATGCCAAGAAATCTCCTTCCACCTGATGCTGCTAACAGGGAGAGCTGCTGGTATGGTTTCATGTGCCGAACCCAGCACCACCGGCCTGACCATGCTAAGAAGCTCAACCATGTCTGTCGTCCAACAAGAGGCAACCCCTAGCCTGCCTCGTTCTCTGAAAAAAATCATCTATTTTCAGTGTTCAACAGCAGCATTGTACAGCAAAGAGCAAGTGCCATAGGCTCTGGTTTCTCAGTGTTTAACAGCTCTGTTTGATTAGTAGGAATGATTGTCAGGTACATCAACCAGTTTCAAATGCCTAAACTGATACAACC] [+] EMBL C28856 [ ngngatgtTGAAATTGTTTCAGGACCCCAGAAAGATGGGCATCTGTTGTACACCTTTGATATAACAGGCCTGAATGACCAGGACAAAACTAATATCAAGATTGTGCTGGATATTGAGAATGCAAAGTGCAGCATATGCTTAAATTTGTGGCATGATGTTGTTACTGTTGCTCCATGCCTCCACAACTTCTGCAACGGTTGCTTCTCTGAGTGGTTAAGAAGGTCTTCAGCTAATTCGCGTGATAAAAGTCAGAGTGCTGCCTGTCCACAATGTAGGACGGCAGTGCAATCAGTTGGTAGG ] consensusID : consensus_11459#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 925 fasta sequence [CCGCCGTGCTCCAGCGCCTAGGGTTTTCTTCGCCGCCGGCGAGTGCTCCAGCTCCTAGGGTTTCTTCACCGCCGGCGAGTGCTCCAGCTCCCAGCCCTGCGCGTCCTCCTCGCCGGACGCTGCCGGTGACGTCTGGGCCAAGCTAGGTCTGTAGTGCCCTCCGATTCCGTGTTCCCGGAGGTGGAGCTGGCCGAGGACGACGCCGTGGTGTGCTCCCGGGTCACCCCGGATGGCGGCGGGGAGGTGGTCGCGTGGTGCAAGATTAGGCGCGGCGGCGACGTGTCGGCGGCGACGATTTGGAATCTGAGCTTGGATGCAATTATTGTCGATGGAAGAGTTATCCAGCAAGAAGCAGTTGACATCAAACCGGGGAGTGAAATTGTTCCAGGGCCCCAGAAAGATGGGTATCTGTTGTACACCTTTGATATAACTGGCCTGAATGACTAGGACAAAAATAATATCAAGATTGTGCTAGGTATTGAGAATGCAAAGTGCAGCATATGCTTAAATTTGTGGGATGATGTTGTTACTGTTGCTTCATGCCTCCACAACTTCTGGCTATACTGTAAGTTTTTTCATCGCTACAGCGGTCTGATGAGGAGATTGCATTGTTGGAGTCATATGCCCCGGTCAAGACAAATATTCTAATCAAGGCCATCTACACCATCCGATGTACCACGCGGCAACGATCCGTCCCCTCTTCTGCTTCTACCCTCCCGTGAGCTCGTGGTTGAAAGTTACATTTGTCATGAATTTGGATTATCATTCTATTTTGAAGATATCCTTGATTGATAAATGCACTGCCATGTTTCAGATAACATTTTATTCTCTTATTTCCCCCAATTTTCCTTCCATTTGGCAATTCTCGTGGTGTTGGTTTGTCTGTACTGCACTTTGACACATTATATTTAATTTACAAGACTTG] [+] EMBL AK099416 [CCGCCGTGCTCCAGCGCCTAGGGTTTTCTTCGCCGCCGGCGAGTGCTCCAGCTCCTAGGGTTTCTTCACCGCCGGCGAGTGCTCCAGCTCCCAGCCCTGCGCGTCCTCCTCGCCGGACGCTGCCGGTGACGTCTGGGCCAAGCTAGGTCTGTAGTGCCCTCCGATTCCGTGTTCCCGGAGGTGGAGCTGGCCGAGGACGACGCCGTGGTGTGCTCCCGGGTCACCCCGGATGGCGGCGGGGAGGTGGTCGCGTGGTGCAAGATTAGGCGCGGCGGCGACGTGTCGGCGGCGACGATTTGGAATCTGAGCTTGGATGCAATTATTGTCGATGGAAGAGTTATCCAGCAAGAAGCAGTTGACATCAAACCGGGGAGTGAAATTGTTCCAGGGCCCCAGAAAGATGGGTATCTGTTGTACACCTTTGATATAACTGGCCTGAATGACTAGGACAAAAATAATATCAAGATTGTGCTAGGTATTGAGAATGCAAAGTGCAGCATATGCTTAAATTTGTGGGATGATGTTGTTACTGTTGCTTCATGCCTCCACAACTTCTGGCTATACTGTAAGTTTTTTCATCGCTACAGCGGTCTGATGAGGAGATTGCATTGTTGGAGTCATATGCCCCGGTCAAGACAAATATTCTAATCAAGGCCATCTACACCATCCGATGTACCACGCGGCAACGATCCGTCCCCTCTTCTGCTTCTACCCTCCCGTGAGCTCGTGGTTGAAAGTTACATTTGTCATGAATTTGGATTATCATTCTATTTTGAAGATATCCTTGATTGATAAATGCACTGCCATGTTTCAGATAACATTTTATTCTCTTATTTCCCCCAATTTTCCTTCCATTTGGCAATTCTCGTGGTGTTGGTTTGTCTGTACTGCACTTTGACACATTATATTTAATTTACAAGACTTG] [+] EMBL CB639860 [ CTAGGGTTTTCTTCGCCGCCGGCGAGTGCTCCAGCTCCTAGGGTTTCTTCACCGCCGGCGAGTGCTCCAGCTCCCAGCCCTGCGCGTCCTCCTCGCCGGACGCTGCCGGTGACGTCTGGGCCAAGCTAGGTCTGTAGTGCCCTCCGATTCCGTGTTCCCGGAGGTGGAGCTGGCCTATGACGACGCCGTGGTGTGCTCCCGGGTCACCCCGGATGGCGGCGGGGAGGTGGTCGCGTGGTGCAAGATTAGGCGCGGCGGCGACGTGTCGGCGGCGACGATTTGGAATCTGAGCTTGGATGCAATTATTGTCGATGGAAGAGTTATCCAGCAAGAAGCAGTTGACATCAAACCGGGGAGTGAAATTGTTCCAGGGCCCCAGAAAGATGGtga ] consensusID : consensus_11459#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 505 fasta sequence [AGCTCCCAGCCCTGCGCGTCCTCCTCGCCGGACGCTGCCGGTGACGTCTGGGCCAAGCTAGGTCTGTAGTGCCCTCCGATTCCGTGTTCCCGGAGGTGGAGCTGGCCGAGGACGACGCCGTGGTGTGCTCCCGGGTCACCCCGGATGGCGGCGGGGAGGTGGTCGCGTGGTGCAAGATTAGGCGCGGCGGCGACGTGTCGGCGGCGACGATTTGGAATCTGAGCTTGGATGCAATTATTGTCGATGGAAGAGTTATCCAGCAAGAAGCAGTTGACATCAAACCGGGGAGTGAAATTGTTTCCAGGGCCCCCGAAAGATGGGTATCTGTTGTACCCCTTTTGATATAAACTGGCCCTGAATGACTAGGGACCAAAAATAATATCCAAGAATTGTGCCTAGGTATTCGAGGAATTGCAAAAGTGGCAGCATTATTGCCTAAAAGTCTGGTGGGGATTGATTGTTGGTTTACCTGGTTGGCCTTCCATGCCCCTCCCAACCAAACTTC] [+] EMBL CA753475 [AGCTCCCAGCCCTGCGCGTCCTCCTCGCCGGACGCTGCCGGTGACGTCTGGGCCAAGCTAGGTCTGTAGTGCCCTCCGATTCCGTGTTCCCGGAGGTGGAGCTGGCCGAGGACGACGCCGTGGTGTGCTCCCGGGTCACCCCGGATGGCGGCGGGGAGGTGGTCGCGTGGTGCAAGATTAGGCGCGGCGGCGACGTGTCGGCGGCGACGATTTGGAATCTGAGCTTGGATGCAATTATTGTCGATGGAAGAGTTATCCAGCAAGAAGCAGTTGACATCAAACCGGGGAGTGAAATTGTTTCCAGGGCCCCCGAAAGATGGGTATCTGTTGTACCCCTTTTGATATAAACTGGCCCTGAATGACTAGGGACCAAAAATAATATCCAAGAATTGTGCCTAGGTATTCGAGGAATTGCAAAAGTGGCAGCATTATTGCCTAAAAGTCTGGTGGGGATTGATTGTTGGTTTACCTGGTTGGCCTTCCATGCCCCTCCCAACCAAACTTC] consensusID : consensus_11459#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 496 fasta sequence [CGATTCCGTGTTCCCGGAGGTGGAGCTGGCCGAGGACGACGCCGTGGTGTGCTCCCGGGTCACCCCGGATGGCGGCGGGGAGGTGGTCGCGTGGTGCAAGATTAGGCGCGGCGGCGACGATTTGGAATCTGAGCTTGGATGCAATTATTGTCGATGGAAGAGTTATCCAGCAAGAAGCAGTTGACATCAAACCGGGGAGTGAAATTGTTCCAGGGCCCCAGAAAGATGGGTATCTGTTGTACACCTTTGATATAACTGGCCTGAATGACTAGGACAAAAATAATATCAAGGTATTTTGTTGAAATGAATGTTGATCAACAGCAATAACCTGNGTGCATAAAAGTCACTAACTTCTATTTAAATGACGATGTCAGATTGTGCTAGGTATTGAGAATGCAAAGTGCAGCATATGCTTAAATTTGTGGCATGATGTTGTTACTGTTGCTTCATGCCTCCACAACTTCTGGTACTTTTGCCAATTTTCCTAGCTACTTTT] [+] EMBL CF305178 [CGATTCCGTGTTCCCGGAGGTGGAGCTGGCCGAGGACGACGCCGTGGTGTGCTCCCGGGTCACCCCGGATGGCGGCGGGGAGGTGGTCGCGTGGTGCAAGATTAGGCGCGGCGGCGACGATTTGGAATCTGAGCTTGGATGCAATTATTGTCGATGGAAGAGTTATCCAGCAAGAAGCAGTTGACATCAAACCGGGGAGTGAAATTGTTCCAGGGCCCCAGAAAGATGGGTATCTGTTGTACACCTTTGATATAACTGGCCTGAATGACTAGGACAAAAATAATATCAAGGTATTTTGTTGAAATGAATGTTGATCAACAGCAATAACCTGNGTGCATAAAAGTCACTAACTTCTATTTAAATGACGATGTCAGATTGTGCTAGGTATTGAGAATGCAAAGTGCAGCATATGCTTAAATTTGTGGCATGATGTTGTTACTGTTGCTTCATGCCTCCACAACTTCTGGTACTTTTGCCAATTTTCCTAGCTACTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11459#0 -------------------------------CACGCACCCGTGGCCGGAGAAGAAGACGC 29 consensus_11459#1 ------------TCCTTCCCTTGCACGCCTCCACGCACCCGTGGCCGGAGAAGAAGACGC 48 consensus_11459#4 ------------------------------------------------------------ consensus_11459#2 CCGCCGTGCTCCAGCGCCTAGGGTTTTCTTCGCCGCCGGCGAGTGCTCCAGCTCCTAGGG 60 consensus_11459#3 ------------------------------------------------------------ consensus_11459#0 CGCCATGGACGCCGGCGAGTGCTCCAGCTCCCAGCCCTGCGCGTCCTCCTCGCCGGACGC 89 consensus_11459#1 CGCCATGGACGCCGGCGAGTGCTCCAGCTCCCAGCCCTGCGCGTCCTCCTCGCCGGACGC 108 consensus_11459#4 ------------------------------------------------------------ consensus_11459#2 TTTCTTCACCGCCGGCGAGTGCTCCAGCTCCCAGCCCTGCGCGTCCTCCTCGCCGGACGC 120 consensus_11459#3 -------------------------AGCTCCCAGCCCTGCGCGTCCTCCTCGCCGGACGC 35 consensus_11459#0 CGCCGGTGGCGTTTGGGCCAAGCTAG--------TGCCCTCCGATTCCGCGTTCCCGGAG 141 consensus_11459#1 CGCCGGTGGCGTTTGGGCCAAGCTAG--------TGCCCTCCGATTCCGCGTTCCCGGAG 160 consensus_11459#4 -----------------------------------------CGATTCCGTGTTCCCGGAG 19 consensus_11459#2 TGCCGGTGACGTCTGGGCCAAGCTAGGTCTGTAGTGCCCTCCGATTCCGTGTTCCCGGAG 180 consensus_11459#3 TGCCGGTGACGTCTGGGCCAAGCTAGGTCTGTAGTGCCCTCCGATTCCGTGTTCCCGGAG 95 ******** ********** consensus_11459#0 GTGGAGCTGGCCGAGGACGACGCCGTGGTGTGCTCCCGGGTCACCCCGGACGGCGGCGGG 201 consensus_11459#1 GTGGAGCTGGCCGAGGACGACGCCGTGGTGTGCTCCCGGGTCACCCCGGACGGCGGCGGG 220 consensus_11459#4 GTGGAGCTGGCCGAGGACGACGCCGTGGTGTGCTCCCGGGTCACCCCGGATGGCGGCGGG 79 consensus_11459#2 GTGGAGCTGGCCGAGGACGACGCCGTGGTGTGCTCCCGGGTCACCCCGGATGGCGGCGGG 240 consensus_11459#3 GTGGAGCTGGCCGAGGACGACGCCGTGGTGTGCTCCCGGGTCACCCCGGATGGCGGCGGG 155 ************************************************** ********* consensus_11459#0 GAGGTGGCCGCGTGGTGCGAGATTAGGCGCGGCGGCGGCGATGGCGACGCGTCGTCGGCG 261 consensus_11459#1 GAGGTGGCCGCGTGGTGCGAGATTAGGCGCGGCGGCGGCGATGGCGACGCGTCGTCGGCG 280 consensus_11459#4 GAGGTGGTCGCGTGGTGCAAGATTAGGCGCGGCGGCG----------------------- 116 consensus_11459#2 GAGGTGGTCGCGTGGTGCAAGATTAGGCGCGGCGGCG---------ACGTGTCGGCGGCG 291 consensus_11459#3 GAGGTGGTCGCGTGGTGCAAGATTAGGCGCGGCGGCG---------ACGTGTCGGCGGCG 206 ******* ********** ****************** consensus_11459#0 ACGATTCGGAATCTGAGCTCGGATGCAATTATTGTCGATGGAAGAGTGATCCAGCAAGAA 321 consensus_11459#1 ACGATTCGGAATCTGAGCTCGGATGCAATTATTGTCGATGGAAGAGTGATCCAGCAAGAA 340 consensus_11459#4 ACGATTTGGAATCTGAGCTTGGATGCAATTATTGTCGATGGAAGAGTTATCCAGCAAGAA 176 consensus_11459#2 ACGATTTGGAATCTGAGCTTGGATGCAATTATTGTCGATGGAAGAGTTATCCAGCAAGAA 351 consensus_11459#3 ACGATTTGGAATCTGAGCTTGGATGCAATTATTGTCGATGGAAGAGTTATCCAGCAAGAA 266 ****** ************ *************************** ************ consensus_11459#0 GCAGTTGACATCAAACCGGGGAGTGAAATTGTT-TCAGGACCCCAGAAAGATGGGCATCT 380 consensus_11459#1 GCAGTTGACATCAAACCGGGGAGTGAAATTGTT-TCAGGACCCCAGAAAGATGGGCATCT 399 consensus_11459#4 GCAGTTGACATCAAACCGGGGAGTGAAATTGTT-CCAGGGCCCCAGAAAGATGGGTATCT 235 consensus_11459#2 GCAGTTGACATCAAACCGGGGAGTGAAATTGTT-CCAGGGCCCCAGAAAGATGGGTATCT 410 consensus_11459#3 GCAGTTGACATCAAACCGGGGAGTGAAATTGTTTCCAGGGCCCCCGAAAGATGGGTATCT 326 ********************************* **** **** ********** **** consensus_11459#0 GTTGTACACCTTT-GATATAA-CAGGCC-TGAATGACCAGGA--CAAAACTAATATCAAG 435 consensus_11459#1 GTTGTACACCTTT-GATATAA-CAGGCC-TGAATGACCAGGA--CAAAACTAATATCAAG 454 consensus_11459#4 GTTGTACACCTTT-GATATAA-CTGGCC-TGAATGACTAGGA--CAAAAATAATATCAAG 290 consensus_11459#2 GTTGTACACCTTT-GATATAA-CTGGCC-TGAATGACTAGGA--CAAAAATAATATC--A 463 consensus_11459#3 GTTGTACCCCTTTTGATATAAACTGGCCCTGAATGACTAGGGACCAAAAATAATATCCAA 386 ******* ***** ******* * **** ******** *** ***** ******* consensus_11459#0 --ATTGTGC-TGGATATT---GAGAATGCAAAGT-G-CAGCATA--TGCTTAAATTTGTG 485 consensus_11459#1 --ATTGTGC-TGGATATT---GAGAATGCAAAGT-G-CAGCATA--TGCTTAAATTTGTG 504 consensus_11459#4 GTATTTTGT-TGAA-------ATGAATGTTGATC-AACAGCAAT--AACCTGNGTGCATA 339 consensus_11459#2 AGATTGTGC-TAGGTATT---GAGAATGCAAAGT--GCAGCATA--TGCTTAAATTTGTG 515 consensus_11459#3 GAATTGTGCCTAGGTATTCGAGGAATTGCAAAAGTGGCAGCATTATTGCCTAAAAGTCTG 446 *** ** * * ** * ***** * * * consensus_11459#0 GCATGATGTTGTTACTG--TTGCTCCATGCCTCCA-CAACTTCTGCAACGGTTGCTTCTC 542 consensus_11459#1 GCATGATGTTGTTACTG--TTGCTCCATGCCTCCA-CAACTTCTGCAACGGTTGCTTCTC 561 consensus_11459#4 AAAGTCACTAACTTCTA--TT--TAAATGACGATGTCAGATTGTGCTA-GGTATTGAGAA 394 consensus_11459#2 GGATGATGTTGTTACTG--TTGCTTCATGCCTCCA-CAACTTCTG--------GCTATAC 564 consensus_11459#3 GTGGGGATTGATTGTTGGTTTACCTGGTTGGCCTT-CCATGCCCC--------TCCCAAC 497 * * * ** * * consensus_11459#0 TGAGTGGTTAAGAAGGTCTTCAGCTAATTCGCGTGATAAAAGTCAGAGTGCTGCCTG--T 600 consensus_11459#1 TGAGTGGTTAAGAAGGTCTTCAGCTAATTCGCGTGATAAAAGTCAGAGTGCTGCCTG--T 619 consensus_11459#4 TGCAAAGTGCAGCATATGCTTAAATTTGTGGCATGATGTTGTTACTGTTGCTTCATGCCT 454 consensus_11459#2 TGTAAGTTTTTTCATCGCTACAGCGGTCTGATGAGGAGATTGCATTGTTGGAGTCATATG 624 consensus_11459#3 C--AAACTTC-------------------------------------------------- 505 * consensus_11459#0 CCACAATGTAGGACGGCAGTGCAATCAGTTGGTAGGAATCACTTCCTACATAGTATTGAA 660 consensus_11459#1 CCACAATGTAGGACGGCAGTGCAATCAGTTGGTAGGAATCACTTCCTACATAATATTGAA 679 consensus_11459#4 CCACAACTTC---TGGTACTTTTGCCAATTT-TCCTAGCTACTTTT-------------- 496 consensus_11459#2 CCCCGGTCAAGACAAATATTCTAATCAAGGC-CATCTACACCATCCGATGTACCACGCGG 683 consensus_11459#3 ------------------------------------------------------------ consensus_11459#0 GAGGCTATACTGCAAGCTTTTTCATCGCTACAGCGGTCTGATGAGGAGATTGCATTGTTG 720 consensus_11459#1 GAGGCTATACTGCAAGCTTTTTCATCGCTACAGCGGTCTGATGAGGAGATTGCATTGTTG 739 consensus_11459#4 ------------------------------------------------------------ consensus_11459#2 CAACGATCCGTCCCCTCTTCTGCTTCTACCCTCCCGTGAGCTCGTGGTTGAAAGTTACAT 743 consensus_11459#3 ------------------------------------------------------------ consensus_11459#0 GAGTCATATGCCTCGGTCAAGACAAATATTGCATGGCATGCATTCATCCCTTTTCCATGG 780 consensus_11459#1 GAGTCATATGCCTCGGTCAAGACAAATATTG----------------------------- 770 consensus_11459#4 ------------------------------------------------------------ consensus_11459#2 TTGTCATGAATTTGGATTATCATTCTATTTTGAAGATATCCTTGATTGATAAATGCACTG 803 consensus_11459#3 ------------------------------------------------------------ consensus_11459#0 TCTTATGCTGGTGCGATGATTCTTAGATCCACCATGGGGATAAACATCTGTCAGAGGGAG 840 consensus_11459#1 ------------------------------------------------------------ consensus_11459#4 ------------------------------------------------------------ consensus_11459#2 CC--ATGTTTCAGATAACATTTTATTCTCTTATTTCCCCCAATTTTCCTTCCATTTGGCA 861 consensus_11459#3 ------------------------------------------------------------ consensus_11459#0 GTTTTGGGGAAACAGAAAATCCAGTCAAGGAAGCGCCGTTTGCCACGTTCAAATGATGAA 900 consensus_11459#1 -TTTTGGGGAAACAGAAAATCCAGTCAAGGAAGCGCCGTTTGCCACGTTCAAATGATGAA 829 consensus_11459#4 ------------------------------------------------------------ consensus_11459#2 ATTCTCGTGGTGTTGGTTTGTCTGT-ACTGCACTTTGACACATTATATTTAATTTACAAG 920 consensus_11459#3 ------------------------------------------------------------ consensus_11459#0 GCTAACCATACTAACCATGCTGATTTTCTATGCCCTCAATGTGGTGCTGAATTTGGTGGA 960 consensus_11459#1 GCTAACCATACTAACCATGCTGATTTTCTATGCCCTCAATGTGGTGCTGAATTTGGTGGA 889 consensus_11459#4 ------------------------------------------------------------ consensus_11459#2 ACTTG------------------------------------------------------- 925 consensus_11459#3 ------------------------------------------------------------ consensus_11459#0 TTTAGGTGCAGTCCAGGTGCTCCACACTTGCCGTGTAATGGATGTGGAGGAATGATGCCA 1020 consensus_11459#1 TTTAGGTGCAGTCCAGGTGCTCCACACTTGCCGTGTAATGGATGTGGAGGAATGATGCCA 949 consensus_11459#4 ------------------------------------------------------------ consensus_11459#2 ------------------------------------------------------------ consensus_11459#3 ------------------------------------------------------------ consensus_11459#0 GCCAGACCTGACACCAGTATACCACAAAAATGTTTGGGATGTGATAGGGCATTTTGTGGA 1080 consensus_11459#1 GCCAGACCTGACACCAGTATACCACAAAAATGTTTGGGATGTGATAGGGCATTTTGTGGA 1009 consensus_11459#4 ------------------------------------------------------------ consensus_11459#2 ------------------------------------------------------------ consensus_11459#3 ------------------------------------------------------------ consensus_11459#0 GCTTATTGGTGTTCCCAAGGAGTGAATTCAAGTCAGCATAATCCAATCTGTGATCAGGAA 1140 consensus_11459#1 GCTTATTGGTGTTCCCAAGGAGTGAATTCAAGTCAGCATAATCCAATCTGTGATCAGGAA 1069 consensus_11459#4 ------------------------------------------------------------ consensus_11459#2 ------------------------------------------------------------ consensus_11459#3 ------------------------------------------------------------ consensus_11459#0 ACTTTCAAGATGATCTCTCAGCGCCATATCTCTAGTGTTCCTGACACAATACATGGAGGC 1200 consensus_11459#1 ACTTTCAAGATGATCTCTCAGCGCCATATCTCTAGTGTTCCTGACACAGTACATGGAGGC 1129 consensus_11459#4 ------------------------------------------------------------ consensus_11459#2 ------------------------------------------------------------ consensus_11459#3 ------------------------------------------------------------ consensus_11459#0 AATCAATACGAGAAAGATATTACAGAAAGATGTATACAGCAATCAGGCAAAGCATTGCAA 1260 consensus_11459#1 AATCAATACGAGAAAGATATTACAGAAAGATGTATACAGCAATCAGGCAAAGCATTGCAA 1189 consensus_11459#4 ------------------------------------------------------------ consensus_11459#2 ------------------------------------------------------------ consensus_11459#3 ------------------------------------------------------------ consensus_11459#0 GCTATAATCTCAGAGTGGATAGTGAAGTTTGACAATAAGGAGCTTGATCGCTCAAGGCTG 1320 consensus_11459#1 GCTATAATCTCAGAGTGGATAGTGAAGTTTGACAATAAGGAGCTTGATCGCTCAAGGCTG 1249 consensus_11459#4 ------------------------------------------------------------ consensus_11459#2 ------------------------------------------------------------ consensus_11459#3 ------------------------------------------------------------ consensus_11459#0 CAGCTGAACCATGTTGATGCAATTACTTCTAGGACATACGTCTGCAACCAATGCTACAGC 1380 consensus_11459#1 CAGCTGAACCATGTTGATGCAATTACTTCTAGGACATACGTCTGCAACCAATGCTACAGC 1309 consensus_11459#4 ------------------------------------------------------------ consensus_11459#2 ------------------------------------------------------------ consensus_11459#3 ------------------------------------------------------------ consensus_11459#0 AAGTTCATCGATTTCCTGCTCTACTGGTTCCGTGTATCAATGCCAAGAAATCTCCCTCCA 1440 consensus_11459#1 AAGTTCATCGATTTCCTGCTCTACTGGTTCCGTGTATCAATGCCAAGAAATCTCCTTCCA 1369 consensus_11459#4 ------------------------------------------------------------ consensus_11459#2 ------------------------------------------------------------ consensus_11459#3 ------------------------------------------------------------ consensus_11459#0 CCTGATGCTGCTAACAGGGAGAGCTGCTGGTATGGTTTCATGTGCCGAACCCAGCACCAC 1500 consensus_11459#1 CCTGATGCTGCTAACAGGGAGAGCTGCTGGTATGGTTTCATGTGCCGAACCCAGCACCAC 1429 consensus_11459#4 ------------------------------------------------------------ consensus_11459#2 ------------------------------------------------------------ consensus_11459#3 ------------------------------------------------------------ consensus_11459#0 CGGCCTGACCATGCTAAGAAGCTCAACCATGTCTGTCGTCCAACAAGAGGCAACCCCTAG 1560 consensus_11459#1 CGGCCTGACCATGCTAAGAAGCTCAACCATGTCTGTCGTCCAACAAGAGGCAACCCCTAG 1489 consensus_11459#4 ------------------------------------------------------------ consensus_11459#2 ------------------------------------------------------------ consensus_11459#3 ------------------------------------------------------------ consensus_11459#0 CCTGCCTCGTTCTCTGAAAAAAATCATCTATTTTCAGTGTTCAACAGCAGCATTGTACAG 1620 consensus_11459#1 CCTGCCTCGTTCTCTGAAAAAAATCATCTATTTTCAGTGTTCAACAGCAGCATTGTACAG 1549 consensus_11459#4 ------------------------------------------------------------ consensus_11459#2 ------------------------------------------------------------ consensus_11459#3 ------------------------------------------------------------ consensus_11459#0 CAAAGAGCAAGTGCCATAGGCTCTGGTTTCTCAGTGTTTAACAGCTCTGTTTGATTAGTA 1680 consensus_11459#1 CAAAGAGCAAGTGCCATAGGCTCTGGTTTCTCAGTGTTTAACAGCTCTGTTTGATTAGTA 1609 consensus_11459#4 ------------------------------------------------------------ consensus_11459#2 ------------------------------------------------------------ consensus_11459#3 ------------------------------------------------------------ consensus_11459#0 GGAATGATTGTCAGGTACATCAACCAGTTTCAAATGCCTAAACTGATA--ACCTGTTTAT 1738 consensus_11459#1 GGAATGATTGTCAGGTACATCAACCAGTTTCAAATGCCTAAACTGATACAACC------- 1662 consensus_11459#4 ------------------------------------------------------------ consensus_11459#2 ------------------------------------------------------------ consensus_11459#3 ------------------------------------------------------------ consensus_11459#0 CTTAAAAACTCCTATTGCAACCTTCCATACTTATGTTTTTGCAATGCAACCTC 1791 consensus_11459#1 ----------------------------------------------------- consensus_11459#4 ----------------------------------------------------- consensus_11459#2 ----------------------------------------------------- consensus_11459#3 ----------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||