cluster # 1147

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Oryza sativa
cluster # 1147 cluster # 1147 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1147#0 length = 531 sequences # 1

consensus_1147#1 length = 445 sequences # 1

consensusID : consensus_1147#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 531
fasta sequence

                              [GCCACTCAGGCTCAGCCGCCCACCAGCCAGCGCCGATAGCCGACCGCGCCCGGCGCCTCCTCCTCAACTCCGCGCCGCCGGCGCCACCACCGGCGTCCCCACCCCGCAAGCCCGCGTCTCTGCGCCGGTGCGGCGCCGCCACCTCCGTCCGCACCGACAACCGTCCCCTCCCCTCCTCCGCGCCGGCGCCGCGCGGCCTCCCCTCCAGCCTCCCCTCCTCCGTGCCGGCGCCGCGCGGCCTCCCCTCCGACCTCCCCGCCGTCCGCGGCTCCTCGCCGAGTCGCCGACGACGACGCCGCGCCGTGCTGCCGACCTGCCGACTGCCGTCCGCCCGTCCCTTCCCCTTCCGTGGCTCAGCCCACTAGCCAGGTAACAAATAGATGCCTAAACTAAATGGCTAGATTTGTGAATTTGTGATTAGAAGATTTGTGAATTTGTGATTAGAGATTAGTTAGTCTGTGAATAACTGAGAATGCAATTTATAAATTGTTACTAATTAGTGAATGTGTGCTAAATGGTAATTGCTATTGT]

[+] EMBL AK062825             [GCCACTCAGGCTCAGCCGCCCACCAGCCAGCGCCGATAGCCGACCGCGCCCGGCGCCTCCTCCTCAACTCCGCGCCGCCGGCGCCACCACCGGCGTCCCCACCCCGCAAGCCCGCGTCTCTGCGCCGGTGCGGCGCCGCCACCTCCGTCCGCACCGACAACCGTCCCCTCCCCTCCTCCGCGCCGGCGCCGCGCGGCCTCCCCTCCAGCCTCCCCTCCTCCGTGCCGGCGCCGCGCGGCCTCCCCTCCGACCTCCCCGCCGTCCGCGGCTCCTCGCCGAGTCGCCGACGACGACGCCGCGCCGTGCTGCCGACCTGCCGACTGCCGTCCGCCCGTCCCTTCCCCTTCCGTGGCTCAGCCCACTAGCCAGGTAACAAATAGATGCCTAAACTAAATGGCTAGATTTGTGAATTTGTGATTAGAAGATTTGTGAATTTGTGATTAGAGATTAGTTAGTCTGTGAATAACTGAGAATGCAATTTATAAATTGTTACTAATTAGTGAATGTGTGCTAAATGGTAATTGCTATTGT]




>consensus_1147#0
GCCACTCAGGCTCAGCCGCCCACCAGCCAGCGCCGATAGCCGACCGCGCCCGGCGCCTCC
TCCTCAACTCCGCGCCGCCGGCGCCACCACCGGCGTCCCCACCCCGCAAGCCCGCGTCTC
TGCGCCGGTGCGGCGCCGCCACCTCCGTCCGCACCGACAACCGTCCCCTCCCCTCCTCCG
CGCCGGCGCCGCGCGGCCTCCCCTCCAGCCTCCCCTCCTCCGTGCCGGCGCCGCGCGGCC
TCCCCTCCGACCTCCCCGCCGTCCGCGGCTCCTCGCCGAGTCGCCGACGACGACGCCGCG
CCGTGCTGCCGACCTGCCGACTGCCGTCCGCCCGTCCCTTCCCCTTCCGTGGCTCAGCCC
ACTAGCCAGGTAACAAATAGATGCCTAAACTAAATGGCTAGATTTGTGAATTTGTGATTA
GAAGATTTGTGAATTTGTGATTAGAGATTAGTTAGTCTGTGAATAACTGAGAATGCAATT
TATAAATTGTTACTAATTAGTGAATGTGTGCTAAATGGTAATTGCTATTGT

consensusID : consensus_1147#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 445
fasta sequence

                              [CCGGCGCCTCCTCCTCAACTCCGCGCCGCCGGCGCCACCACCGGCGTCCCCACCCCGCAAGCCCGCGTCTCTGCGCCGGTGCGGCGCCGCCACCTCCGTCCGCACCGACAACCGTCCCCTCCCCTCCTCCGCGCCGGCGCCGCGCGGCCTCCCCTCCAGCCTCCCCTCCTCCGTGCCGGCGCCGCGCGGCCTCCCCTCCGACCTCCCCGCCGTCCGCGGCTCCTCGCCGAGTCGCCGACGACGACGCCGCGCCGTGCTGCCGACCTGCCGACTGCCGTCCGCCCGTCCCTTCCCCTTCCGTGGCTCAGCCCACTAGCCAGGATCTATGTTGATTGTTGGACTCTCTATGTTGTAATATTTGCACATTTCGAACTTGCTTGCTAAGTAAGCCGCTTATGGATGTTGGAAGACATTATTTCTATCGCATTTTCAAAAAAAAAAAAAA]

[+] EMBL CA754465             [CCGGCGCCTCCTCCTCAACTCCGCGCCGCCGGCGCCACCACCGGCGTCCCCACCCCGCAAGCCCGCGTCTCTGCGCCGGTGCGGCGCCGCCACCTCCGTCCGCACCGACAACCGTCCCCTCCCCTCCTCCGCGCCGGCGCCGCGCGGCCTCCCCTCCAGCCTCCCCTCCTCCGTGCCGGCGCCGCGCGGCCTCCCCTCCGACCTCCCCGCCGTCCGCGGCTCCTCGCCGAGTCGCCGACGACGACGCCGCGCCGTGCTGCCGACCTGCCGACTGCCGTCCGCCCGTCCCTTCCCCTTCCGTGGCTCAGCCCACTAGCCAGGATCTATGTTGATTGTTGGACTCTCTATGTTGTAATATTTGCACATTTCGAACTTGCTTGCTAAGTAAGCCGCTTATGGATGTTGGAAGACATTATTTCTATCGCATTTTCAAAAAAAAAAAAAA]




>consensus_1147#1
CCGGCGCCTCCTCCTCAACTCCGCGCCGCCGGCGCCACCACCGGCGTCCCCACCCCGCAA
GCCCGCGTCTCTGCGCCGGTGCGGCGCCGCCACCTCCGTCCGCACCGACAACCGTCCCCT
CCCCTCCTCCGCGCCGGCGCCGCGCGGCCTCCCCTCCAGCCTCCCCTCCTCCGTGCCGGC
GCCGCGCGGCCTCCCCTCCGACCTCCCCGCCGTCCGCGGCTCCTCGCCGAGTCGCCGACG
ACGACGCCGCGCCGTGCTGCCGACCTGCCGACTGCCGTCCGCCCGTCCCTTCCCCTTCCG
TGGCTCAGCCCACTAGCCAGGATCTATGTTGATTGTTGGACTCTCTATGTTGTAATATTT
GCACATTTCGAACTTGCTTGCTAAGTAAGCCGCTTATGGATGTTGGAAGACATTATTTCT
ATCGCATTTTCAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1147#0      GCCACTCAGGCTCAGCCGCCCACCAGCCAGCGCCGATAGCCGACCGCGCCCGGCGCCTCC 60
consensus_1147#1      -------------------------------------------------CCGGCGCCTCC 11
                                                                       ***********

consensus_1147#0      TCCTCAACTCCGCGCCGCCGGCGCCACCACCGGCGTCCCCACCCCGCAAGCCCGCGTCTC 120
consensus_1147#1      TCCTCAACTCCGCGCCGCCGGCGCCACCACCGGCGTCCCCACCCCGCAAGCCCGCGTCTC 71
                      ************************************************************

consensus_1147#0      TGCGCCGGTGCGGCGCCGCCACCTCCGTCCGCACCGACAACCGTCCCCTCCCCTCCTCCG 180
consensus_1147#1      TGCGCCGGTGCGGCGCCGCCACCTCCGTCCGCACCGACAACCGTCCCCTCCCCTCCTCCG 131
                      ************************************************************

consensus_1147#0      CGCCGGCGCCGCGCGGCCTCCCCTCCAGCCTCCCCTCCTCCGTGCCGGCGCCGCGCGGCC 240
consensus_1147#1      CGCCGGCGCCGCGCGGCCTCCCCTCCAGCCTCCCCTCCTCCGTGCCGGCGCCGCGCGGCC 191
                      ************************************************************

consensus_1147#0      TCCCCTCCGACCTCCCCGCCGTCCGCGGCTCCTCGCCGAGTCGCCGACGACGACGCCGCG 300
consensus_1147#1      TCCCCTCCGACCTCCCCGCCGTCCGCGGCTCCTCGCCGAGTCGCCGACGACGACGCCGCG 251
                      ************************************************************

consensus_1147#0      CCGTGCTGCCGACCTGCCGACTGCCGTCCGCCCGTCCCTTCCCCTTCCGTGGCTCAGCCC 360
consensus_1147#1      CCGTGCTGCCGACCTGCCGACTGCCGTCCGCCCGTCCCTTCCCCTTCCGTGGCTCAGCCC 311
                      ************************************************************

consensus_1147#0      ACTAGCCAGGTAACAAATAGATGCCTAAACTAAATGGCTAGATTTGTGAATTTGTGATTA 420
consensus_1147#1      ACTAGCCAGGATCTATGTTGATTGTTGGACT------CTCTATGTTGTAAT-----ATTT 360
                      **********    *  * ***   *  ***      **  ** *   ***     *** 

consensus_1147#0      GAAGATTTGTGAATTTGTGATTAGAGATTAGTTAGTCTGTGAATAACTGAGAATGCAATT 480
consensus_1147#1      GCACATTT-CGAACTTGC--TTGCTAAGTAAGCCGCTTATGGATGTTGGAAGACATTATT 417
                      * * ****  *** ***   **    * **    *  * ** **    **  *    ***

consensus_1147#0      TATAAATTGTTACTAATTAGTGAATGTGTGCTAAATGGTAATTGCTATTGT 531
consensus_1147#1      TCTATCGCATTTTCAAAAAAAAAAAAAA----------------------- 445
                      * **     **   **  *   **