cluster # 11475

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 11475 cluster # 11475 Sequences # 9 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11475#0 length = 426 sequences # 5

consensus_11475#1 length = 328 sequences # 3
consensus_11475#2 length = 190 sequences # 1

consensusID : consensus_11475#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 426
fasta sequence

                              [GGGGCGGTGGCGGACTTGGTGGAGGCGGTGGTGGAGGTGGTGGAGGATTTGGTGGCGGTGGAGGCAGTNGGATTGGCGGTGGTTTTGGGAAGGGTGGTGGATTTGGTTTCGGTGTTGGCGGCGGAGGTTTCGGCGGCGGTGGAGGTGGCGGCGGTGGTGGCGGAGGGATCGGTGGCAAGCACTAATACACTGGTACCTACTTCGTTTCAGTTCTCTTGCACTCCATGGGCCATCATGGTATTTAGCTTGAGCGAGTAGCTGCAATATTATGTAGGCTTTTGTTGTGGAGCTTATAGCAGTACTGTTGCGTTTGATGGTTTCTCCCCTTCGGACGTTTGGATAAGTCTGTTGGTACCCTATATGTT-GTTATTAA--TTTGTG-ACGGTG-ATA-CCATATT--ATATAT-GTACTTAAGTAAAAACAATGTTGTT]

[+] EMBL OSC04921             [GGGGCGGTGGCGGACTTGGTGGAGGCGGTGGTGGAGGTGGTGGAGGATTTGGTGGCGGTGGAGGCAGTNGGATTGGCGGTGGTTTTGGGAAGGGTGGTGGATTTGGTTTCGGTGTTGGCGGCGGAGGTTTCGGCGGCGGTGGAGGTGGCGGCGGTGGTGGCGGAGGGATCGGTGGCAAGCACTAATACACTGGTACCTACTTCGTTTCAGTTCTCTTGCACTCCATGGGCCATCATGGTATTTAGCTTGAGCGAGTAGCTGCAATATTATGTAGGCTTTTGTTGTGGAGCTTATA                                                                                                                                            ]
[+] EMBL AU173571             [                                                                                                      TTGGTTTCGGTGTTGGCGGCGGAGGTTTCGGCGGCGGTGGAGGTGGCGGCGGTGGTGGCGGAGGGATCGGTGGCAAGCACTAATACACTGGTACCTACTTCGTTTCAGTTCTCTTGCACTCCATGGGCCATCATGGTATTTAGCTTGAGCGAGTAGCTGCAATATTATGTAGGCTTTTGTTGTGGAGCTTATAGCAGTACTGTTGCGTTTGATGGTTTCTCCCCTTCGGACGTTTGGATAAGTCTGTTGGTACCCTATATGTT GTTATTAA  TTTGTG ACGGTG ATA CCATATT  ATATAT GTACTTAAGTAAAAA          ]
[+] EMBL AU173572             [                                                                                                      TTGGTTTCGGTGTTGGCGGCGGAGGTTTCGGCGGCGGTGGAGGTGGCGGCGGTGGTGGCGGAGGGATCGGTGGCAAGCACTAATACACTGGTACCTACTTCGTTTCAGTTCTCTTGCACTCCATGGGCCATCATGGTATTTAGCTTGAGCNAGTAGCTGCAATATTATGTAGGCTTTTGTTGTGGAGCTTATAGCAGTACTGTTGCGTTTNATGGTTTCTCCCCTTCGGACGTTTGGATAAGTCTGTTGGTACCCTATATGTT GTTATTAA  TTTGTG ACGGTG ATA CCATATT  ATATAT GTACTTAAGTAAAAA          ]
[+] EMBL AU173573             [                                                                                                      TTGGTTTCGGTGTTGGCGGCGGAGGTTTCGGCGGCGGTGGAGGTGGCGGCGGTGGTGGCGGAGGGATCGGTGGCAAGCACTAATACACTGGTACCTACTTCGTTTCAGTTCTCTTGCACTCCATGGGCCATCATGGTATTTAGCTTGAGCNAGTAGCTGCAATATTATGTAGGCTTTTGTTGTGGAGCTTATAGCAGTACTGTTGCGTTTAATGGTTTCTCCCCTTCGGACGTTTGGATAAGTCTGTTGGTACCCTATATGTT GTTATTAA  TTTGTG ACGGTG ATA CCATATT  ATATAT GTACTTAAGTAAAAA          ]
[+] EMBL AU161825             [                                                                                                        GGTTTCGGTGTTGGCGGCGGAGGTTTCGGCGGCGGTGGAGGTGGCGGCGGTGGTGGCGGAGGGATCGGTGGCAAGCACTAATACACTGGTACCTACTTCGTTTCAGTTCTCTTGCACTCCATGGGCCATCATGGTATTTAGCTTGAGCGAGTAGCTGCAATATTATGTAGGCTTTTGTTGTGGAGCTTATAGCAGTACTGTTGCGTTTGATGGTTTCTCCCCTTCGGACGTTTGGATAAGTCTGTTGGTACCCTATATGTTGGTTATTAATTTTTGTGAACGGTGAATACCCATATTTAATATATGGTACTTAAGGTACTTCAATGTTGTT]




>consensus_11475#0
GGGGCGGTGGCGGACTTGGTGGAGGCGGTGGTGGAGGTGGTGGAGGATTTGGTGGCGGTG
GAGGCAGTNGGATTGGCGGTGGTTTTGGGAAGGGTGGTGGATTTGGTTTCGGTGTTGGCG
GCGGAGGTTTCGGCGGCGGTGGAGGTGGCGGCGGTGGTGGCGGAGGGATCGGTGGCAAGC
ACTAATACACTGGTACCTACTTCGTTTCAGTTCTCTTGCACTCCATGGGCCATCATGGTA
TTTAGCTTGAGCGAGTAGCTGCAATATTATGTAGGCTTTTGTTGTGGAGCTTATAGCAGT
ACTGTTGCGTTTGATGGTTTCTCCCCTTCGGACGTTTGGATAAGTCTGTTGGTACCCTAT
ATGTTGTTATTAATTTGTGACGGTGATACCATATTATATATGTACTTAAGTAAAAACAAT
GTTGTT

consensusID : consensus_11475#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 328
fasta sequence

                              [GGTGGCGGAGGGATCGGTGGCAAGCACTAATACACT-GGTACCTACTTCGTTTCAGTTCTCTTGCACTCCATGGGCCATCATGGTATTTAGCTTGAGCGAGTAGC-TGCAATATTATGTAGGCTTTTGTTGTGGAGCTTATAGCAGTACTGTTGCGTTTGATGGTTTCTCCCCTTCGGACGTTTGGATAAGTCTGTTGGTACCCTATATGTTGTTATTAATTTGTGACGGTGATACC-ATATTATATATGTACTTAAGTACTTCATGTGTTAACATATC-ATATGTTTCGAAC-GATTGGAGGTATATATATAAACTTCAGATTAAAAAAAAA]

[+] EMBL AU033249             [GGTGGCGGAGGGATCGGTGGCAAGCACTAATACACT GGTACCTACTTCGNTTCAGTTCTCTTGCACTCCATGGGCCATCATGGTATTTAGCTTGAGCGAGTAGC TGCAATATNATGTAGGCTTTTGTTGTGGAGCTTATAGCAGTACTGTTGCGTTTGATGGTTTCTCCCCTTCGGACGTTTGGATAAGTCTGTTGGTACCCTATATGTTGTTATTAATTTGTGACGGTGATACC ATATTATATATGTACTTAAGTACTTCATGTGTTAACATATC ATATGTTTCGAAC GATTGGAGGTATATATATAANCTTCAGATTAAAAAA   ]
[+] EMBL AU166923             [                                 ACTGGGTACCTACTTCGTTTCAGTTNTCTTGCACTCCATGGGCCATCATGGTATTTAGCTTGAGCGAGTAGCTTGCAATATTATGTAGGCTTTTGTTGTGGAGCTTATAGCAGNACTGTTGCGTTTGATGGTTTCTCCCCTTCGGACGTTTGNATAAGTCTGTTGGTACCCTATATGTTGTTATTAATTTGTGACGGTGATACCNATATTATATATGNACTTAAGTACTTCATGTGTTAACANATCAATATGTTTCGAACTGATTGGAGGTATATATATAAACTTCAGATTAAACAAAAA]
[+] EMBL C98056               [                                       TACCTACNTCGTTTCAGTTCTCTTGCACTCCATGGGCCATCATGGTATTTAGCTTGANCGAGTAGC TGCAATATTATNTAGGCTTTTGTTGTGGNGCTTATAGCAGTACTGTTGCGTTTGATGGTTTCT CCCTTCGGACGTTTGGATAAGTNTGTTGGTNCCCTATATGTTGTTATTAATTTGTGACGGTGATACC ATATTATATATGTACTTAAGTACTTCATGTGTTAACNTATC ATATGTTTCGAAC GATTGGAGGTATATAAAAAAAaaa               ]




>consensus_11475#1
GGTGGCGGAGGGATCGGTGGCAAGCACTAATACACTGGTACCTACTTCGTTTCAGTTCTC
TTGCACTCCATGGGCCATCATGGTATTTAGCTTGAGCGAGTAGCTGCAATATTATGTAGG
CTTTTGTTGTGGAGCTTATAGCAGTACTGTTGCGTTTGATGGTTTCTCCCCTTCGGACGT
TTGGATAAGTCTGTTGGTACCCTATATGTTGTTATTAATTTGTGACGGTGATACCATATT
ATATATGTACTTAAGTACTTCATGTGTTAACATATCATATGTTTCGAACGATTGGAGGTA
TATATATAAACTTCAGATTAAAAAAAAA

consensusID : consensus_11475#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 190
fasta sequence

                              [AGAGGACGAGACAAGGGGGAGTAGCTGCAATATTATGTAGGCTTTTGTTGTGGAGCTTATAGCAGTACTGTTGCGTTTGATGGTTTCTCCCCTTCGGACGTTTGGATAAGTCTGTTGGTACCCTATGTGTTGTTATTAATTTGTGACGGTGATACCATATTATATATGTACTTAAGTAAAAAAAAAAAAA]

[-] EMBL CA760483             [AGAGGACGAGACAAGGGGGAGTAGCTGCAATATTATGTAGGCTTTTGTTGTGGAGCTTATAGCAGTACTGTTGCGTTTGATGGTTTCTCCCCTTCGGACGTTTGGATAAGTCTGTTGGTACCCTATGTGTTGTTATTAATTTGTGACGGTGATACCATATTATATATGTACTTAAGTAAAAAAAAAAAAA]




>consensus_11475#2
AGAGGACGAGACAAGGGGGAGTAGCTGCAATATTATGTAGGCTTTTGTTGTGGAGCTTAT
AGCAGTACTGTTGCGTTTGATGGTTTCTCCCCTTCGGACGTTTGGATAAGTCTGTTGGTA
CCCTATGTGTTGTTATTAATTTGTGACGGTGATACCATATTATATATGTACTTAAGTAAA
AAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11475#0      GGGGCGGTGGCGGACTTGGTGGAGGCGGTGGTGGAGGTGGTGGAGGATTTGGTGGCGGTG 60
consensus_11475#2      ------------------------------------------------------------
consensus_11475#1      ------------------------------------------------------------
                                                                                   

consensus_11475#0      GAGGCAGTNGGATTGGCGGTGGTTTTGGGAAGGGTGGTGGATTTGGTTTCGGTGTTGGCG 120
consensus_11475#2      ------------------------------------------------------------
consensus_11475#1      ------------------------------------------------------------
                                                                                   

consensus_11475#0      GCGGAGGTTTCGGCGGCGGTGGAGGTGGCGGCGGTGGTGGCGGAGGGATCGGTGGCAAGC 180
consensus_11475#2      ------------------------------------------------------------
consensus_11475#1      -----------------------------------GGTGGCGGAGGGATCGGTGGCAAGC 25
                                                                                   

consensus_11475#0      ACTAATACACTGGTACCTACTTCGTTTCAGTTCTCTTGCACTCCATGGGCCATCATGGTA 240
consensus_11475#2      ------------------------------------------------------AGAGGA 6
consensus_11475#1      ACTAATACACTGGTACCTACTTCGTTTCAGTTCTCTTGCACTCCATGGGCCATCATGGTA 85
                                                                             *  * *

consensus_11475#0      TTTAGCTTGAGCGAGTAGCTGCAATATTATGTAGGCTTTTGTTGTGGAGCTTATAGCAGT 300
consensus_11475#2      CGAGACAAGGGGGAGTAGCTGCAATATTATGTAGGCTTTTGTTGTGGAGCTTATAGCAGT 66
consensus_11475#1      TTTAGCTTGAGCGAGTAGCTGCAATATTATGTAGGCTTTTGTTGTGGAGCTTATAGCAGT 145
                            *  * * ************************************************

consensus_11475#0      ACTGTTGCGTTTGATGGTTTCTCCCCTTCGGACGTTTGGATAAGTCTGTTGGTACCCTAT 360
consensus_11475#2      ACTGTTGCGTTTGATGGTTTCTCCCCTTCGGACGTTTGGATAAGTCTGTTGGTACCCTAT 126
consensus_11475#1      ACTGTTGCGTTTGATGGTTTCTCCCCTTCGGACGTTTGGATAAGTCTGTTGGTACCCTAT 205
                       ************************************************************

consensus_11475#0      ATGTTGTTATTAATTTGTGACGGTGATACCATATTATATATGTACTTAAGTAAAAACAAT 420
consensus_11475#2      GTGTTGTTATTAATTTGTGACGGTGATACCATATTATATATGTACTTAAGTAAAAAAAAA 186
consensus_11475#1      ATGTTGTTATTAATTTGTGACGGTGATACCATATTATATATGTACTTAAGTACTTCATGT 265
                        ***************************************************        

consensus_11475#0      GTTGTT------------------------------------------------------ 426
consensus_11475#2      AAAA-------------------------------------------------------- 190
consensus_11475#1      GTTAACATATCATATGTTTCGAACGATTGGAGGTATATATATAAACTTCAGATTAAAAAA 325
                                                                                   

consensus_11475#0      ---
consensus_11475#2      ---
consensus_11475#1      AAA 328