|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1148#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1028 fasta sequence
[AAAACCGATCCAGACAACAACAGCATCATACTCACACAGTTCGCGGCAGCAATGGCGGGAAGAGGAGGAGGAGGAGGAGGAGGCGAGCTGCAGCTGCTGGGCACATGGTACAGCCCGTACGCTATGCGCGCGAAAATCGCGCTGGGGCTCAAGGGCCTGAGCTACGAGTACATCGAGCAGGACCTCTTCGGCAAGAGCGAGCTCCTGCTCAAGAGCAACCCGGTGCACAAGAAGGTCCCCGTCCTCATCCATGCCGGCCGGCCGGTGTGCGAGTCGCGCGTGGTTCTCGAGTACGTCGACGAGGCCTGGCCCGGGGCCGCGCCGCCGCTCCTCCCGGCCGACCCCCACGACCGCGCCACCGCTCGCTTCTGGGCGACCTACTTCGACAGCACGGTAATCGATGGCATCTTCCTGAAGAAATCAACCTTAGATAGATAGCAACGTTCATGTCGGTGATTGAGAAATCAATATTAGAGAGATCGACATTTTTGTTTTGATACTGTATTAAGTTCTTCCCGCCGTGGAGGGCGCTGATGAGGGCGACGACGGCGGAGCAGAGAGCGGAGGCCTTCATGAACGCCGTACCTCAGGTGGAGGTGCTGGAGCGAGCGTTCGTGGAGTGCTCCAAGGGGAAGGCGTTCTTCGGCGGCGACGCCGTCGGGCTCGTCGACGTCGTGGTCGGCGGCTTCGTGGTGTGGTTCAAGGTGGTGGACGAGGTGGCCGGCTCCAGCCTCCTCGACGAGGCCAAGTTCCCGGGCCTGGCGGCGTGGGCGGAGCGGTTCTTGGCGGTGGACGCCGTCCGGGAGGCGATGCCCGACGCCGGGAAGCTCCTGGAGCACTACAAGGGATTTCTGGCTAAATTGGCTTCGCCAGCTGGTTCTACCTAATGGCAATCTATCTGCCTTGCTCGCCTGCTTTGACGATGAAGAAGTTGTTTGGTACTGTGTCATGTGAAAATATTTTGTTAGTCTCTGTTGAGCGGTGTTCAGAATGCAAATGTGTACATCTTGAATAAAAGGAGAGCAAAA]
[+] EMBL AK064650 [AAAACCGATCCAGACAACAACAGCATCATACTCACACAGTTCGCGGCAGCAATGGCGGGAAGAGGAGGAGGAGGAGGAGGAGGCGAGCTGCAGCTGCTGGGCACATGGTACAGCCCGTACGCTATGCGCGCGAAAATCGCGCTGGGGCTCAAGGGCCTGAGCTACGAGTACATCGAGCAGGACCTCTTCGGCAAGAGCGAGCTCCTGCTCAAGAGCAACCCGGTGCACAAGAAGGTCCCCGTCCTCATCCATGCCGGCCGGCCGGTGTGCGAGTCGCGCGTGGTTCTCGAGTACGTCGACGAGGCCTGGCCCGGGGCCGCGCCGCCGCTCCTCCCGGCCGACCCCCACGACCGCGCCACCGCTCGCTTCTGGGCGACCTACTTCGACAGCACGGTAATCGATGGCATCTTCCTGAAGAAATCAACCTTAGATAGATAGCAACGTTCATGTCGGTGATTGAGAAATCAATATTAGAGAGATCGACATTTTTGTTTTGATACTGTATTAAGTTCTTCCCGCCGTGGAGGGCGCTGATGAGGGCGACGACGGCGGAGCAGAGAGCGGAGGCCTTCATGAACGCCGTACCTCAGGTGGAGGTGCTGGAGCGAGCGTTCGTGGAGTGCTCCAAGGGGAAGGCGTTCTTCGGCGGCGACGCCGTCGGGCTCGTCGACGTCGTGGTCGGCGGCTTCGTGGTGTGGTTCAAGGTGGTGGACGAGGTGGCCGGCTCCAGCCTCCTCGACGAGGCCAAGTTCCCGGGCCTGGCGGCGTGGGCGGAGCGGTTCTTGGCGGTGGACGCCGTCCGGGAGGCGATGCCCGACGCCGGGAAGCTCCTGGAGCACTACAAGGGATTTCTGGCTAAATTGGCTTCGCCAGCTGGTTCTACCTAATGGCAATCTATCTGCCTTGCTCGCCTGCTTTGACGATGAAGAAGTTGTTTGGTACTGTGTCATGTGAAAATATTTTGTTAGTCTCTGTTGAGCGGTGTTCAGAATGCAAATGTGTACATCTTGAATAAAAGGAGAGCAAAA]
consensusID : consensus_1148#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 589 fasta sequence
[AGCATCATACTCACACAGTTCGCGGCAGCAATGGCGGGAAGAGGAGGAGGAGGAGGAGGAGGCGAGCTGCAGCTGCTGGGCACATGGTACAGCCCGTACGCTATGCGCGCGAAAATCGCGCTGGGGCTCAAGGGCCTGAGCTACGAGTACATCGAGCAGGACCTCTTCGGCAAGAGCGAGCTCCTGCTCAAGAGCAACCCGGTGCACAAGAAGGTCCCCGTCCTCATCCATGCCGGCCGGCCGGTGTGCGAGTCGCGCGTGGTTCTCGAGTACGTCGACGAGGCCTGGCCCGGCGCCGCGCCGCCGCTCCTCCCGGCCGACCCCCACGACCGCGCCACCGCTCGCTTCTGGGCGACCTACTTCGACAGCACGTTCTTCCCGCCGTGGAGGGCGCTGATGAGGGCGACGACTGCGGAGCCAGAGAGCGGAGGCCTTCATGAACGCCGGACCTCAGGTGGAGGTGCCTGGACGAGCGTTCGTGGAGCGCTCCCAGGGGAAGGCGTTCTTCGGCGGCGACCCCGTCGGGCTCGTCGACGTCGTGGTCGGCGGCTTCCTGTGGTGGTTCAAGGTGGTGGACGAGGTGCCCGGC]
[+] EMBL CA754459 [AGCATCATACTCACACAGTTCGCGGCAGCAATGGCGGGAAGAGGAGGAGGAGGAGGAGGAGGCGAGCTGCAGCTGCTGGGCACATGGTACAGCCCGTACGCTATGCGCGCGAAAATCGCGCTGGGGCTCAAGGGCCTGAGCTACGAGTACATCGAGCAGGACCTCTTCGGCAAGAGCGAGCTCCTGCTCAAGAGCAACCCGGTGCACAAGAAGGTCCCCGTCCTCATCCATGCCGGCCGGCCGGTGTGCGAGTCGCGCGTGGTTCTCGAGTACGTCGACGAGGCCTGGCCCGGCGCCGCGCCGCCGCTCCTCCCGGCCGACCCCCACGACCGCGCCACCGCTCGCTTCTGGGCGACCTACTTCGACAGCACGTTCTTCCCGCCGTGGAGGGCGCTGATGAGGGCGACGACTGCGGAGCCAGAGAGCGGAGGCCTTCATGAACGCCGGACCTCAGGTGGAGGTGCCTGGACGAGCGTTCGTGGAGCGCTCCCAGGGGAAGGCGTTCTTCGGCGGCGACCCCGTCGGGCTCGTCGACGTCGTGGTCGGCGGCTTCCTGTGGTGGTTCAAGGTGGTGGACGAGGTGCCCGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1148#0 AAAACCGATCCAGACAACAACAGCATCATACTCACACAGTTCGCGGCAGCAATGGCGGGA 60
consensus_1148#1 ---------------------AGCATCATACTCACACAGTTCGCGGCAGCAATGGCGGGA 39
***************************************
consensus_1148#0 AGAGGAGGAGGAGGAGGAGGAGGCGAGCTGCAGCTGCTGGGCACATGGTACAGCCCGTAC 120
consensus_1148#1 AGAGGAGGAGGAGGAGGAGGAGGCGAGCTGCAGCTGCTGGGCACATGGTACAGCCCGTAC 99
************************************************************
consensus_1148#0 GCTATGCGCGCGAAAATCGCGCTGGGGCTCAAGGGCCTGAGCTACGAGTACATCGAGCAG 180
consensus_1148#1 GCTATGCGCGCGAAAATCGCGCTGGGGCTCAAGGGCCTGAGCTACGAGTACATCGAGCAG 159
************************************************************
consensus_1148#0 GACCTCTTCGGCAAGAGCGAGCTCCTGCTCAAGAGCAACCCGGTGCACAAGAAGGTCCCC 240
consensus_1148#1 GACCTCTTCGGCAAGAGCGAGCTCCTGCTCAAGAGCAACCCGGTGCACAAGAAGGTCCCC 219
************************************************************
consensus_1148#0 GTCCTCATCCATGCCGGCCGGCCGGTGTGCGAGTCGCGCGTGGTTCTCGAGTACGTCGAC 300
consensus_1148#1 GTCCTCATCCATGCCGGCCGGCCGGTGTGCGAGTCGCGCGTGGTTCTCGAGTACGTCGAC 279
************************************************************
consensus_1148#0 GAGGCCTGGCCCGGGGCCGCGCCGCCGCTCCTCCCGGCCGACCCCCACGACCGCGCCACC 360
consensus_1148#1 GAGGCCTGGCCCGGCGCCGCGCCGCCGCTCCTCCCGGCCGACCCCCACGACCGCGCCACC 339
************** *********************************************
consensus_1148#0 GCTCGCTTCTGGGCGACCTACTTCGACAGCACGGTAATCGATGGCATCTTCCTGAAGAAA 420
consensus_1148#1 GCTCGCTTCTGGGCGACCTACTTCGACAGCACG--------------------------- 372
*********************************
consensus_1148#0 TCAACCTTAGATAGATAGCAACGTTCATGTCGGTGATTGAGAAATCAATATTAGAGAGAT 480
consensus_1148#1 ------------------------------------------------------------
consensus_1148#0 CGACATTTTTGTTTTGATACTGTATTAAGTTCTTCCCGCCGTGGAGGGCGCTGATGAGGG 540
consensus_1148#1 -----------------------------TTCTTCCCGCCGTGGAGGGCGCTGATGAGGG 403
*******************************
consensus_1148#0 CGACGACGGCGGAGC-AGAGAGCGGAGGCCTTCATGAACGCCGTACCTCAGGTGGAGGTG 599
consensus_1148#1 CGACGACTGCGGAGCCAGAGAGCGGAGGCCTTCATGAACGCCGGACCTCAGGTGGAGGTG 463
******* ******* *************************** ****************
consensus_1148#0 CTGGAGCGAGCGTTCGTGGAGTGCTCCAAGGGGAAGGCGTTCTTCGGCGGCGACGCCGTC 659
consensus_1148#1 CCTGGACGAGCGTTCGTGGAGCGCTCCCAGGGGAAGGCGTTCTTCGGCGGCGACCCCGTC 523
* * *************** ***** ************************** *****
consensus_1148#0 GGGCTCGTCGACGTCGTGGTCGGCGGCTTCGTGGTGTGGTTCAAGGTGGTGGACGAGGTG 719
consensus_1148#1 GGGCTCGTCGACGTCGTGGTCGGCGGCTTCCTGTGGTGGTTCAAGGTGGTGGACGAGGTG 583
****************************** ** *************************
consensus_1148#0 GCCGGCTCCAGCCTCCTCGACGAGGCCAAGTTCCCGGGCCTGGCGGCGTGGGCGGAGCGG 779
consensus_1148#1 CCCGGC------------------------------------------------------ 589
*****
consensus_1148#0 TTCTTGGCGGTGGACGCCGTCCGGGAGGCGATGCCCGACGCCGGGAAGCTCCTGGAGCAC 839
consensus_1148#1 ------------------------------------------------------------
consensus_1148#0 TACAAGGGATTTCTGGCTAAATTGGCTTCGCCAGCTGGTTCTACCTAATGGCAATCTATC 899
consensus_1148#1 ------------------------------------------------------------
consensus_1148#0 TGCCTTGCTCGCCTGCTTTGACGATGAAGAAGTTGTTTGGTACTGTGTCATGTGAAAATA 959
consensus_1148#1 ------------------------------------------------------------
consensus_1148#0 TTTTGTTAGTCTCTGTTGAGCGGTGTTCAGAATGCAAATGTGTACATCTTGAATAAAAGG 1019
consensus_1148#1 ------------------------------------------------------------
consensus_1148#0 AGAGCAAAA 1028
consensus_1148#1 ---------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||