These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11488#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 618 fasta sequence [CTCAGCTCACCATTGCCCATCAGCACAAC-AAACACACACACACACACAACACACAGAGTAAAATCAGT-AAGGAGGAGAAACGAGGATGAAGCTTGTGGGGAGCGAGAGGAGG-CAGAGGGGAGGAGGCTTCGGGAGGGCCATCAAGCAGCAGAGGGCGAGGCTCTACATCATCCAGCGCTGCGTCGTCATGCTCCTCCGCTGGCAAGACTGATCCCCACCAACTCGATCCTCCAAATCCATCCCTCGATCCTCCTCGGTCGGTCGGTTCGTTGCCTCGTTGGTTGGGTCGCTCCTTCGCGGAAAGTTTTGGTTCTTTTTTGGTTGTGTGCTGTGCCAGAATGGTGTC-GGCCGTTTGTACATAGAGGCCAACAAAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGA-TTTTAGTTCTAGTGTTCGCGAGTGTGTGCATTGTACAATCACCATGTCACTACTGTCGAATGCAAATACGATGAACCAAGTGAGAACATATGATTCAAAAAAAAAAAAAGGNGGCGAACGGGTGGGGTCAGTTTTNTTCCTTGGGGGGTAATTGGGTTGGATATGGANGTGTTCGNTNATGTTCGTAATTCAAAAATGGNGGGN] [+] EMBL CF299395 [CTCAGCTCACCATTGCCCATCAGCACAAC AAACACACACACACACACAACACACAGAGTAAAATCAGT AAGGAGGAGAAACGAGGATGAAGCTTGTGGGGAGCGAGAGGAGG CAGAGGGGAGGAGGCTTCGGGAGGGCCATCAAGCAGCAGAGGGCGAGGCTCTACATCATCCAGCGCTGCGTCGTCATGCTCCTCCGCTGGCAAGACTGATCCCCACCAACTCGATCCTCCAAATCCATCCCTCGATCCTCCTCGGTCGGTCGGTTCGTTGCCTCGTTGGTTGGGTCACTCCTTCGCGGAAAGTTTTGGTTCTTTTTTGGTTGTGTGCTGTGCCAGAATGGTGTC GGCCGTTTGTACATAGAGGCCAAC AAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGA TTTTAGTCCTAGTGTTCGCGAGTGTGTGCATTGTACAATCACCATGTCACTACTGTCGAATGCAAATACGATGAACCAAGTGAGAACAa ] [-] EMBL CF299396 [ TCAGCTCACCATTGCCCATCAGCACAACAAAACACACACACACACACAACACACAGAGTAAAATCAGT AAGGAGGAGAAACGAGGATGAAGCTTGTGGGGAGCGAGAGGAGG CAGAGGGGAGGAGGCTTCGGGAGGGCCATCAAGCAGCAGAGGGCGAGGCTCTACATCATCCAGCGCTGCGTCGTCATGCTCCTCCGCTGGCAAGACTGATCCCCACCAACTCGATCCTCCAAATCCATCCCTCGATCCTCCTCGGTCGGTCGGTTCGTTGCCTCGTTGGTTGGGTCACTCCTTCGCGGAAAGTTTTGGTTCTTTTTTGGTTGTGTGCTGTGCCAGAATGGTGTC GGCCGTTTGTACATAGAGGCCAAC AAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGA TTTTAGTCCTAGTGTTCGCGAGTGTGTGCATTGTACAATCACCATGTCACTACTGTCGAATGCAAATACGATGAACCAAGTGAGACCAaaaaaa ] [+] EMBL AK062691 [ CAGCTCACCATTGCCCATCAGCACAAC AAACACACACACACACACAACACACAGAGTAAAATCAGT AAGGAGGAGAAACGAGGATGAAGCTTGTGGGGAGCGAGAGGAGG CAGAGGGGAGGAGGCTTCGGGAGGGCCATCAAGCAGCAGAGGGCGAGGCTCTACATCATCCAGCGCTGCGTCGTCATGCTCCTCCGCTGGCAAGACTGATCCCCACCAACTCGATCCTCCAAATCCATCCCTCGATCCTCCTCGGTCGGTCGGTTCGTTGCCTCGTTGGTTGGGTCGCTCCTTCGCGGAAAGTTTTGGTTCTTTTTTGGTTGTGTGCTGTGCCAGAATGGTGTC GGCCGTTTGTACATAGAGGCCAACAAAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGA TTTTAGTTCTAGTGTTCGCGAGTGTGTGCATTGTACAATCACCATGTCACTACTGTCGAATGCAAATACGATGAACCAAGTGAGAACATATGATT ] [+] EMBL OSC13521 [ CCATCAGCACAAC AAACACACACACACACACAACACACAGAGTAAAATCAGT AAGGAGGAGAAACGAGGATGAAGCTTGTGGGGAGCGAGAGGAGG CAGAGGGGAGGAGGCTTCGGGAGGGCCATCAAGCAGCAGAGGGCGAGGCTCTACATCATCCAGCGCTGCGTCGTCATGCTCCTCCGCTGGCAAGACTGATCCCCACCAACTCGATCCTCCAAATCCATCCCTCGATCCTCCTCGGTCGGTCGGTTCGTTGCCTCGTTGGTTGGGTCGCTCCTTCGCGGAAAGTTTTGGTTCTTTTTTGGTTGTGTGCTGTGCCAGAATGGTGTCGGGCCGTTTGTACATAGAGGCCAACAAAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGATTTTTAGTTCTAGTGTTCGCGAGTNTGTTCATTGTACAATCAACATGTNA TACTGTCGAATG NAATACGNTG ACCAAGTGAG ACATATGNTTCAAAAAAAAAAAAAGGNGGCGAACGGGTGGGGTCAGTTTTNTTCCTTGGGGGGTAATTGGGTTGGATATGGANGTGTTCGNTNATGTTCGTAATTCAAAAATGGNGGGN] [+] EMBL AU093204 [ CCATCAGCACAAC AAACACACACACACACACAACACACAGAGTAAAATCAGTAAAGGAGGAGAAACGAGGATGAANCTTNTGGGGAGCGAGAGGAGGCCAGAGGGGAGGAGGCTTCGGGAGGGCCATCAAGCAGCAGAGGGCGAGGCTCTACATCATCCAGCGCTGCGTCGTCATGCTCCTCCGCTGGCAAGACTGATCCCCACCAACTCGATCCTCCAAATCCATCCCTCGATCCTCCTCGGTCGGTCGGTTCGTTGCCTCGTTGGTTGGGTCGCTCCTTCGCGGAAAGTTTTGGTTCTTTTTTGGTTGTGTGCTGTGCCAGAATGGTGTC GGCCGTTTGTACATAGAGGCCAACAAAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGA TTTTAGTTCTAGTGTTCGCGAGTGTGTGCATTGTACAATCACCATGTCACTACTGTCGAATGCAAATACGATGAACCAAGTGAGAACATATGATTCCAAAAAA ] [+] EMBL CB679304 [ CAGCACATC AAACACACACACACACACAACACACAGAGTAAAATCAGT AAGGAGGAGAAACGAGGATGAAGCTTGTGGGGAGCGAGAGGAGG CAGAGGGGAGGAGGCTTCGGGAGGGCCATCAAGCAGCAGAGGGCGAGGCTCTACATCATCCAGCGCTGCGTCGTCATGCTCCTCCGCTGGCAAGACTGATCCCCACCAACTCGATCCTCCAAATCCATCCCTCGATCCTCCTCGGTCGGTCGGTTCGTTGCCTCGTTGGTTGGGTCGCTCCTTCGCGGAAAGTTTTGGTTCTTTTTTGGTTGTGTGCTGTGCCAAAATGGTGTC GGCCGTTTGTACATAGAGGCCAACAAAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGA TTTTAGTTCTAGTGTTCGCGAGTGTGTGCATTGTACAATCACCATGTCACTACTGTCGAATGCAAATACGATGAACC ] [+] EMBL OSS15871A [ GCACAAC AAACACACACACACACACAACACACAGNGTAAAATCAGT AAGGAGGAGAAACGAGGATGAAGCTTGTGGGGAGCGAGAGGAGG CAGAGGGGAGGAGGCTTCGGGAGGGCCATCAAGCAGCAGAGGGCGAGGCTCTACATCATCCAGCGCTGCGTCGTCATGCTCCTCCGCTGGCAAGACTGATCCCCACCAACTCGATCCTCCAAATCCATCCCTCGATCCTCCTCGGTCGGTCGGTTCGTTGCCTCGTTGGTTGGGTCGCTCCTTCGCGGAAAGTTTTGGTTCTTTTTTGGTTGTGTGCTGTGCCANAATNGTGTC GGCCGTTTGTACATAGAGG CAACAAAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGG TTTTAGTTCTAGT ] consensusID : consensus_11488#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 288 fasta sequence [TCCATCCCTCGATCCTCCTCGGTCGGTCGGTTCGTTGCCTCGTTGGTTGGGTCGCTCCTTCGCGGAAAGTTTTGGTTCTTTTTTGGTTGTGTGCTGTGCCAGAATGGTGTCGGCCGTTTGTACATAGAGGCCAACAAAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGATTTTAGTTCTAGTGTTCGCGAGTGTGTGCATTGTACAATCACCATGTCACTACTGTCGAATGCAAATACGATGAACCAAGTGAGAACATATGATTCCATCGCCTGAAAA] [+] EMBL AU162078 [TCCATCCCTCGATCCTCCTCGGTCGGTCGGTTCGTTGCCTCGTTGGTTGGGTCGCTCCTTCGCGGAAAGTTTTGGTTCTTTTTTGGTTGTGTGCTGTGCCAGAATGGTGTCGGCCGTTTGTACATAGAGGCCAACAAAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGATTTTAGTTCTAGTGTTCGCGAGTGTGTGCATTGTACAATCACCATGTCACTACTGTCGAATGCAAATACGATGAACCAAGTGAGAACATATGATTCCATCGCCTGAAAA] consensusID : consensus_11488#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 216 fasta sequence [TGTGCTGTGCCAGAATGGTGTCGGCCGTTTGTACATAGAGGCCAACAAAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGATTTTAGTTCTAGTGTTCGCGAGTGTGTGCATTGTACAATCACCATGTCACTACTGTCGAATGCAAATACGATGAACCAAGTGAGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF331767 [TGTGCTGTGCCAGAATGGTGTCGGCCGTTTGTACATAGAGGCCAACAAAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGATTTTAGTTCTAGTGTTCGCGAGTGTGTGCATTGTACAATCACCATGTCACTACTGTCGAATGCAAATACGATGAACCAAGTGAGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11488#0 CTCAGCTCACCATTGCCCATCAGCACAACAAACACACACACACACACAACACACAGAGTA 60 consensus_11488#1 ------------------------------------------------------------ consensus_11488#2 ------------------------------------------------------------ consensus_11488#0 AAATCAGTAAGGAGGAGAAACGAGGATGAAGCTTGTGGGGAGCGAGAGGAGGCAGAGGGG 120 consensus_11488#1 ------------------------------------------------------------ consensus_11488#2 ------------------------------------------------------------ consensus_11488#0 AGGAGGCTTCGGGAGGGCCATCAAGCAGCAGAGGGCGAGGCTCTACATCATCCAGCGCTG 180 consensus_11488#1 ------------------------------------------------------------ consensus_11488#2 ------------------------------------------------------------ consensus_11488#0 CGTCGTCATGCTCCTCCGCTGGCAAGACTGATCCCCACCAACTCGATCCTCCAAATCCAT 240 consensus_11488#1 -------------------------------------------------------TCCAT 5 consensus_11488#2 ------------------------------------------------------------ consensus_11488#0 CCCTCGATCCTCCTCGGTCGGTCGGTTCGTTGCCTCGTTGGTTGGGTCGCTCCTTCGCGG 300 consensus_11488#1 CCCTCGATCCTCCTCGGTCGGTCGGTTCGTTGCCTCGTTGGTTGGGTCGCTCCTTCGCGG 65 consensus_11488#2 ------------------------------------------------------------ consensus_11488#0 AAAGTTTTGGTTCTTTTTTGGTTGTGTGCTGTGCCAGAATGGTGTCGGCCGTTTGTACAT 360 consensus_11488#1 AAAGTTTTGGTTCTTTTTTGGTTGTGTGCTGTGCCAGAATGGTGTCGGCCGTTTGTACAT 125 consensus_11488#2 ------------------------TGTGCTGTGCCAGAATGGTGTCGGCCGTTTGTACAT 36 ************************************ consensus_11488#0 AGAGGCCAACAAAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGATTTTAG 420 consensus_11488#1 AGAGGCCAACAAAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGATTTTAG 185 consensus_11488#2 AGAGGCCAACAAAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGATTTTAG 96 ************************************************************ consensus_11488#0 TTCTAGTGTTCGCGAGTGTGTGCATTGTACAATCACCATGTCACTACTGTCGAATGCAAA 480 consensus_11488#1 TTCTAGTGTTCGCGAGTGTGTGCATTGTACAATCACCATGTCACTACTGTCGAATGCAAA 245 consensus_11488#2 TTCTAGTGTTCGCGAGTGTGTGCATTGTACAATCACCATGTCACTACTGTCGAATGCAAA 156 ************************************************************ consensus_11488#0 TACGATGAACCAAGTGAGAACATATGATTCAAAAAAAAAAAAAGGNGGCGAACGGGTGGG 540 consensus_11488#1 TACGATGAACCAAGTGAGAACATATGATTCCATCGCCTGAAAA----------------- 288 consensus_11488#2 TACGATGAACCAAGTGAGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 216 ********************** * * * **** consensus_11488#0 GTCAGTTTTNTTCCTTGGGGGGTAATTGGGTTGGATATGGANGTGTTCGNTNATGTTCGT 600 consensus_11488#1 ------------------------------------------------------------ consensus_11488#2 ------------------------------------------------------------ consensus_11488#0 AATTCAAAAATGGNGGGN 618 consensus_11488#1 ------------------ consensus_11488#2 ------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||