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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11488#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 618 fasta sequence
[CTCAGCTCACCATTGCCCATCAGCACAAC-AAACACACACACACACACAACACACAGAGTAAAATCAGT-AAGGAGGAGAAACGAGGATGAAGCTTGTGGGGAGCGAGAGGAGG-CAGAGGGGAGGAGGCTTCGGGAGGGCCATCAAGCAGCAGAGGGCGAGGCTCTACATCATCCAGCGCTGCGTCGTCATGCTCCTCCGCTGGCAAGACTGATCCCCACCAACTCGATCCTCCAAATCCATCCCTCGATCCTCCTCGGTCGGTCGGTTCGTTGCCTCGTTGGTTGGGTCGCTCCTTCGCGGAAAGTTTTGGTTCTTTTTTGGTTGTGTGCTGTGCCAGAATGGTGTC-GGCCGTTTGTACATAGAGGCCAACAAAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGA-TTTTAGTTCTAGTGTTCGCGAGTGTGTGCATTGTACAATCACCATGTCACTACTGTCGAATGCAAATACGATGAACCAAGTGAGAACATATGATTCAAAAAAAAAAAAAGGNGGCGAACGGGTGGGGTCAGTTTTNTTCCTTGGGGGGTAATTGGGTTGGATATGGANGTGTTCGNTNATGTTCGTAATTCAAAAATGGNGGGN]
[+] EMBL CF299395 [CTCAGCTCACCATTGCCCATCAGCACAAC AAACACACACACACACACAACACACAGAGTAAAATCAGT AAGGAGGAGAAACGAGGATGAAGCTTGTGGGGAGCGAGAGGAGG CAGAGGGGAGGAGGCTTCGGGAGGGCCATCAAGCAGCAGAGGGCGAGGCTCTACATCATCCAGCGCTGCGTCGTCATGCTCCTCCGCTGGCAAGACTGATCCCCACCAACTCGATCCTCCAAATCCATCCCTCGATCCTCCTCGGTCGGTCGGTTCGTTGCCTCGTTGGTTGGGTCACTCCTTCGCGGAAAGTTTTGGTTCTTTTTTGGTTGTGTGCTGTGCCAGAATGGTGTC GGCCGTTTGTACATAGAGGCCAAC AAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGA TTTTAGTCCTAGTGTTCGCGAGTGTGTGCATTGTACAATCACCATGTCACTACTGTCGAATGCAAATACGATGAACCAAGTGAGAACAa ]
[-] EMBL CF299396 [ TCAGCTCACCATTGCCCATCAGCACAACAAAACACACACACACACACAACACACAGAGTAAAATCAGT AAGGAGGAGAAACGAGGATGAAGCTTGTGGGGAGCGAGAGGAGG CAGAGGGGAGGAGGCTTCGGGAGGGCCATCAAGCAGCAGAGGGCGAGGCTCTACATCATCCAGCGCTGCGTCGTCATGCTCCTCCGCTGGCAAGACTGATCCCCACCAACTCGATCCTCCAAATCCATCCCTCGATCCTCCTCGGTCGGTCGGTTCGTTGCCTCGTTGGTTGGGTCACTCCTTCGCGGAAAGTTTTGGTTCTTTTTTGGTTGTGTGCTGTGCCAGAATGGTGTC GGCCGTTTGTACATAGAGGCCAAC AAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGA TTTTAGTCCTAGTGTTCGCGAGTGTGTGCATTGTACAATCACCATGTCACTACTGTCGAATGCAAATACGATGAACCAAGTGAGACCAaaaaaa ]
[+] EMBL AK062691 [ CAGCTCACCATTGCCCATCAGCACAAC AAACACACACACACACACAACACACAGAGTAAAATCAGT AAGGAGGAGAAACGAGGATGAAGCTTGTGGGGAGCGAGAGGAGG CAGAGGGGAGGAGGCTTCGGGAGGGCCATCAAGCAGCAGAGGGCGAGGCTCTACATCATCCAGCGCTGCGTCGTCATGCTCCTCCGCTGGCAAGACTGATCCCCACCAACTCGATCCTCCAAATCCATCCCTCGATCCTCCTCGGTCGGTCGGTTCGTTGCCTCGTTGGTTGGGTCGCTCCTTCGCGGAAAGTTTTGGTTCTTTTTTGGTTGTGTGCTGTGCCAGAATGGTGTC GGCCGTTTGTACATAGAGGCCAACAAAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGA TTTTAGTTCTAGTGTTCGCGAGTGTGTGCATTGTACAATCACCATGTCACTACTGTCGAATGCAAATACGATGAACCAAGTGAGAACATATGATT ]
[+] EMBL OSC13521 [ CCATCAGCACAAC AAACACACACACACACACAACACACAGAGTAAAATCAGT AAGGAGGAGAAACGAGGATGAAGCTTGTGGGGAGCGAGAGGAGG CAGAGGGGAGGAGGCTTCGGGAGGGCCATCAAGCAGCAGAGGGCGAGGCTCTACATCATCCAGCGCTGCGTCGTCATGCTCCTCCGCTGGCAAGACTGATCCCCACCAACTCGATCCTCCAAATCCATCCCTCGATCCTCCTCGGTCGGTCGGTTCGTTGCCTCGTTGGTTGGGTCGCTCCTTCGCGGAAAGTTTTGGTTCTTTTTTGGTTGTGTGCTGTGCCAGAATGGTGTCGGGCCGTTTGTACATAGAGGCCAACAAAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGATTTTTAGTTCTAGTGTTCGCGAGTNTGTTCATTGTACAATCAACATGTNA TACTGTCGAATG NAATACGNTG ACCAAGTGAG ACATATGNTTCAAAAAAAAAAAAAGGNGGCGAACGGGTGGGGTCAGTTTTNTTCCTTGGGGGGTAATTGGGTTGGATATGGANGTGTTCGNTNATGTTCGTAATTCAAAAATGGNGGGN]
[+] EMBL AU093204 [ CCATCAGCACAAC AAACACACACACACACACAACACACAGAGTAAAATCAGTAAAGGAGGAGAAACGAGGATGAANCTTNTGGGGAGCGAGAGGAGGCCAGAGGGGAGGAGGCTTCGGGAGGGCCATCAAGCAGCAGAGGGCGAGGCTCTACATCATCCAGCGCTGCGTCGTCATGCTCCTCCGCTGGCAAGACTGATCCCCACCAACTCGATCCTCCAAATCCATCCCTCGATCCTCCTCGGTCGGTCGGTTCGTTGCCTCGTTGGTTGGGTCGCTCCTTCGCGGAAAGTTTTGGTTCTTTTTTGGTTGTGTGCTGTGCCAGAATGGTGTC GGCCGTTTGTACATAGAGGCCAACAAAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGA TTTTAGTTCTAGTGTTCGCGAGTGTGTGCATTGTACAATCACCATGTCACTACTGTCGAATGCAAATACGATGAACCAAGTGAGAACATATGATTCCAAAAAA ]
[+] EMBL CB679304 [ CAGCACATC AAACACACACACACACACAACACACAGAGTAAAATCAGT AAGGAGGAGAAACGAGGATGAAGCTTGTGGGGAGCGAGAGGAGG CAGAGGGGAGGAGGCTTCGGGAGGGCCATCAAGCAGCAGAGGGCGAGGCTCTACATCATCCAGCGCTGCGTCGTCATGCTCCTCCGCTGGCAAGACTGATCCCCACCAACTCGATCCTCCAAATCCATCCCTCGATCCTCCTCGGTCGGTCGGTTCGTTGCCTCGTTGGTTGGGTCGCTCCTTCGCGGAAAGTTTTGGTTCTTTTTTGGTTGTGTGCTGTGCCAAAATGGTGTC GGCCGTTTGTACATAGAGGCCAACAAAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGA TTTTAGTTCTAGTGTTCGCGAGTGTGTGCATTGTACAATCACCATGTCACTACTGTCGAATGCAAATACGATGAACC ]
[+] EMBL OSS15871A [ GCACAAC AAACACACACACACACACAACACACAGNGTAAAATCAGT AAGGAGGAGAAACGAGGATGAAGCTTGTGGGGAGCGAGAGGAGG CAGAGGGGAGGAGGCTTCGGGAGGGCCATCAAGCAGCAGAGGGCGAGGCTCTACATCATCCAGCGCTGCGTCGTCATGCTCCTCCGCTGGCAAGACTGATCCCCACCAACTCGATCCTCCAAATCCATCCCTCGATCCTCCTCGGTCGGTCGGTTCGTTGCCTCGTTGGTTGGGTCGCTCCTTCGCGGAAAGTTTTGGTTCTTTTTTGGTTGTGTGCTGTGCCANAATNGTGTC GGCCGTTTGTACATAGAGG CAACAAAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGG TTTTAGTTCTAGT ]
consensusID : consensus_11488#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 288 fasta sequence
[TCCATCCCTCGATCCTCCTCGGTCGGTCGGTTCGTTGCCTCGTTGGTTGGGTCGCTCCTTCGCGGAAAGTTTTGGTTCTTTTTTGGTTGTGTGCTGTGCCAGAATGGTGTCGGCCGTTTGTACATAGAGGCCAACAAAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGATTTTAGTTCTAGTGTTCGCGAGTGTGTGCATTGTACAATCACCATGTCACTACTGTCGAATGCAAATACGATGAACCAAGTGAGAACATATGATTCCATCGCCTGAAAA]
[+] EMBL AU162078 [TCCATCCCTCGATCCTCCTCGGTCGGTCGGTTCGTTGCCTCGTTGGTTGGGTCGCTCCTTCGCGGAAAGTTTTGGTTCTTTTTTGGTTGTGTGCTGTGCCAGAATGGTGTCGGCCGTTTGTACATAGAGGCCAACAAAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGATTTTAGTTCTAGTGTTCGCGAGTGTGTGCATTGTACAATCACCATGTCACTACTGTCGAATGCAAATACGATGAACCAAGTGAGAACATATGATTCCATCGCCTGAAAA]
consensusID : consensus_11488#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 216 fasta sequence
[TGTGCTGTGCCAGAATGGTGTCGGCCGTTTGTACATAGAGGCCAACAAAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGATTTTAGTTCTAGTGTTCGCGAGTGTGTGCATTGTACAATCACCATGTCACTACTGTCGAATGCAAATACGATGAACCAAGTGAGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF331767 [TGTGCTGTGCCAGAATGGTGTCGGCCGTTTGTACATAGAGGCCAACAAAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGATTTTAGTTCTAGTGTTCGCGAGTGTGTGCATTGTACAATCACCATGTCACTACTGTCGAATGCAAATACGATGAACCAAGTGAGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11488#0 CTCAGCTCACCATTGCCCATCAGCACAACAAACACACACACACACACAACACACAGAGTA 60
consensus_11488#1 ------------------------------------------------------------
consensus_11488#2 ------------------------------------------------------------
consensus_11488#0 AAATCAGTAAGGAGGAGAAACGAGGATGAAGCTTGTGGGGAGCGAGAGGAGGCAGAGGGG 120
consensus_11488#1 ------------------------------------------------------------
consensus_11488#2 ------------------------------------------------------------
consensus_11488#0 AGGAGGCTTCGGGAGGGCCATCAAGCAGCAGAGGGCGAGGCTCTACATCATCCAGCGCTG 180
consensus_11488#1 ------------------------------------------------------------
consensus_11488#2 ------------------------------------------------------------
consensus_11488#0 CGTCGTCATGCTCCTCCGCTGGCAAGACTGATCCCCACCAACTCGATCCTCCAAATCCAT 240
consensus_11488#1 -------------------------------------------------------TCCAT 5
consensus_11488#2 ------------------------------------------------------------
consensus_11488#0 CCCTCGATCCTCCTCGGTCGGTCGGTTCGTTGCCTCGTTGGTTGGGTCGCTCCTTCGCGG 300
consensus_11488#1 CCCTCGATCCTCCTCGGTCGGTCGGTTCGTTGCCTCGTTGGTTGGGTCGCTCCTTCGCGG 65
consensus_11488#2 ------------------------------------------------------------
consensus_11488#0 AAAGTTTTGGTTCTTTTTTGGTTGTGTGCTGTGCCAGAATGGTGTCGGCCGTTTGTACAT 360
consensus_11488#1 AAAGTTTTGGTTCTTTTTTGGTTGTGTGCTGTGCCAGAATGGTGTCGGCCGTTTGTACAT 125
consensus_11488#2 ------------------------TGTGCTGTGCCAGAATGGTGTCGGCCGTTTGTACAT 36
************************************
consensus_11488#0 AGAGGCCAACAAAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGATTTTAG 420
consensus_11488#1 AGAGGCCAACAAAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGATTTTAG 185
consensus_11488#2 AGAGGCCAACAAAAAAAAATGGTACAAGTAGCAGTAGCAGTAGCAGAAGTAGGATTTTAG 96
************************************************************
consensus_11488#0 TTCTAGTGTTCGCGAGTGTGTGCATTGTACAATCACCATGTCACTACTGTCGAATGCAAA 480
consensus_11488#1 TTCTAGTGTTCGCGAGTGTGTGCATTGTACAATCACCATGTCACTACTGTCGAATGCAAA 245
consensus_11488#2 TTCTAGTGTTCGCGAGTGTGTGCATTGTACAATCACCATGTCACTACTGTCGAATGCAAA 156
************************************************************
consensus_11488#0 TACGATGAACCAAGTGAGAACATATGATTCAAAAAAAAAAAAAGGNGGCGAACGGGTGGG 540
consensus_11488#1 TACGATGAACCAAGTGAGAACATATGATTCCATCGCCTGAAAA----------------- 288
consensus_11488#2 TACGATGAACCAAGTGAGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 216
********************** * * * ****
consensus_11488#0 GTCAGTTTTNTTCCTTGGGGGGTAATTGGGTTGGATATGGANGTGTTCGNTNATGTTCGT 600
consensus_11488#1 ------------------------------------------------------------
consensus_11488#2 ------------------------------------------------------------
consensus_11488#0 AATTCAAAAATGGNGGGN 618
consensus_11488#1 ------------------
consensus_11488#2 ------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||